Array 1 354964-356791 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAALXT010000002.1 Rubinisphaera sp. JC658 2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 354964 35 86.1 37 A........T....G.-.............C..... AATGTTGGCCACTTACTGACCACGGCATGAGCGAAGT T [354975] 355037 36 100.0 37 .................................... TCGCCGCTACCGCGTCGCCTATGTAATCGCGTGCGTT 355110 36 100.0 35 .................................... TCAATCGGGACTACAGAAAAATCCAAATCAACAAT 355181 36 100.0 37 .................................... TAGTTGCCCTCCCCTCTCGCAACTGCACGCGCCCCAC 355254 36 100.0 34 .................................... ATCCCACTTCCAGCTCCCCCCTGGTTGATTTCCT 355324 36 100.0 36 .................................... AGGGTGGTCATGGACTGTCGTTTCGGGGACTATCGA 355396 36 100.0 34 .................................... TTGGTTCTAGGGGTATCGCTGTTCGTGCTGGAGT 355466 36 100.0 35 .................................... GTCGCCGGTAGTTCCGCAGCTTCCTGGCTCCAACC 355537 36 100.0 35 .................................... GCGGTCGAGGAATGGTTCCAGAACCGGGTGGGCCG 355608 36 100.0 36 .................................... TCGAGACTCGAATTGCCTGAATAACGCTGTCGATCT 355680 36 100.0 35 .................................... TGCCGGTCTCAAGAACACCGACAAGGCGGTGGAGG 355751 36 100.0 37 .................................... ACCCTAGCCGAACGAACTTTTCAGGCTGGCGGGGTGC 355824 36 100.0 35 .................................... CAAAAACTCTACTGGATGGGGAAACAGCCCCTCGT 355895 36 100.0 38 .................................... CGGCATCTTTGCGAACAATGCTATCGCAGTTGATAATG 355969 36 100.0 35 .................................... CGCAATCCGACCGGAGTATTGCGGAACACCGTCAG 356040 36 100.0 36 .................................... CAGTGCCAGTGCCGTTCCACGGTTGCCGTCTGGCTC 356112 36 100.0 34 .................................... ACAAATAAACTGCCACCCAGAAAGCACGGCGAAA 356182 36 100.0 36 .................................... TGGACGTTTGAAGAGGCGACCTACGCAACCCAAGAA 356254 36 100.0 36 .................................... ACGATTGGCAGGAGGCGACGGCATGGCTTTAAGCGA 356326 36 100.0 34 .................................... CTCGGGCTCGCGTCAGAAACCGCGTCAGGATTTC 356396 36 100.0 37 .................................... TCAAGTCAACGTCAGCGTCGAACGCGGTGTTGTTTTG 356469 36 100.0 35 .................................... TGGCGAGATGGACCAGATTCGCGAACCACGGGAAT 356540 36 100.0 37 .................................... TCAACTGCGATATCAAAGTCATTTCCCGGCGGTCAAG 356613 36 100.0 35 .................................... TGCCCGTTCGGGTGCTTGCAATACTTCGGGATCCT 356684 36 100.0 36 .................................... GGCCGCAATCGCTTTTTCCGCATCGTGCTGGTCCCA 356756 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ====================================== ================== 26 36 99.5 36 GTGCTCAACGCCTGTTGGCGTTATCGGAATTGAAAC # Left flank : AATGGCAGGAAATGCTCGTCGAAGACGGGCACGCCACTCCCGCAGATTTGGCCGCCAGCCGGATTGATTTCCCTGCTTGGTTGAAGACGCTCGATCCCCGCGATCAACAAATTGCCCTTAAGTTATCTAACGGGGAAAGCACGCAAAAGGTGGCCAAGCTATTTCGCATCTCCGCGGGAAGAGTCAGCCAACTCCGCCGAGAACTGCGAGACGCCTGGCGGGCCTTCCATGGCGAACTCGATTGTGAAGCCGCGTTCGCCACGGTCTAACTTGCAAGCCGCCGAACGGCAACTGCGGACTAACGTGAGAAGAACCAAGAGTCTCGATCTTTCTACTTACCAATCGCCTAGCACGAGTTAAGACTGTCCGCGTTATTGCTTCGCACCGCTTTCTATCATCGGAAAAATCGGAAAACGGCCTACTTCGGCAGTCCCTGGTCGGTTCTCGATCAGGGGCTGGTATCTCTCTGGAAACAGTTCGAGTCACACGAGAGACTTCAA # Right flank : CGGCATCGGTCGTAAACTGTTAAGCGGTAACAGGTTAATGGGGCGTCTTTCACGCATCATGGGGCTTACACTACGGATTGACATATTTCAGCTCACGTGGTCGCTTAACATGCGTTCGTTTTCCTCCTAACTTCTGCCTGGAAAGGCAGATCCATCATCCAGCAGGCCTTTCATGAACCTCAATGACCCAATGTTGGCCGTAACAGCCGCAGTCCACTGGGTTTATGATCAAGATGATACACGTAGTTCGTCGGCCACCCGACGGTGCATGAGTCTGCAGCTTGCAGGTCCAGTCTCAGACGATTTTGAACGATTGGGGCCGATCGGTCCAGTCACTCTGGTCGCCCGTGGAGTGGAGCGGAACTTTGCCGGCACACGTTGGGCAGAGGGGAATGACGAGGAGATCGTCTTCGTCGGCGAGGATTTGACCCAGTTCCCAATGCAGTCGCTCCAGCGTATTCGCATCCAGCCGAATACGAAACACGCTGTACTGAATCCGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCAACGCCTGTTGGCGTTATCGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [8,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-9.00,-8.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.78 Confidence: HIGH] # Array family : NA // Array 2 565274-561971 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAALXT010000002.1 Rubinisphaera sp. JC658 2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 565273 32 100.0 33 ................................ ACGTTCGAGCTGTCCGGACTGGCGTACACCGGA 565208 32 100.0 33 ................................ ATCCCACAAGGTCGGCCGAATTTGCTGTTCACG 565143 32 100.0 33 ................................ ACGATGGTGTTGATGGATTTGCTCCATCGTCTT 565078 32 100.0 36 ................................ GTGGATGCGACTGATCAATTGGAAGTCGCCACGGAT 565010 32 100.0 33 ................................ GTGCGATCCACAGTTTGACGTGTGGGATTGGGC 564945 32 100.0 35 ................................ ACTTGCAGCTTCGATCGCGTCAGTGATTGCGATGG 564878 32 100.0 36 ................................ GGTGTAATCGAATGAGCTTGCGTGATTGTTGGCGAG 564810 32 100.0 35 ................................ CTGGAATGGAGTAGACGCTGTGAACTGGCGCAAAT 564743 32 100.0 36 ................................ AGAGTCTTCGATTGTGCGTCCGTCATGCCGAAGAAT 564675 32 100.0 36 ................................ AGAAACTTGGTTCACCGCTGACGAGGCTGTTGAGTG 564607 32 100.0 34 ................................ ACCGTCGCCGATCGCTGCACACTGACAGCAGGGC 564541 32 100.0 36 ................................ GCGTCTCTCCGACGGCGGTACGTCGTGACTGGCGAG 564473 32 100.0 36 ................................ ATCATAGGCTGTTACTTCTGACCAACCGGCGTGACT 564405 32 100.0 36 ................................ TTCGTGGTTTGTCGCTTGGCCGTGTCACCCGTGAGA 564337 32 100.0 35 ................................ GTCAGCAACTTGCGAATGTTATCGAGCGACCCAAT 564270 32 100.0 35 ................................ TTGCTGCAATGGATCGTCAGGGTCTATCGTTGCCA 564203 32 100.0 32 ................................ ATCGTCCGTGCCTGCAATTCTCACGCTGCCCT 564139 32 100.0 36 ................................ CACGAGCAGAATCGAGTCGGTTGCCGAACGATCTTG 564071 32 100.0 35 ................................ CGAATCTCCCGATTTGGCCCGATAACACTGCTCCC 564004 32 100.0 36 ................................ ACGCCAAACGAGTAGCCCCTCTTGATACCAGCCGCC 563936 32 100.0 34 ................................ AGGTCGTCACAAGCTGATCAGTACAGCCGACGTG 563870 32 100.0 38 ................................ CATGCGTCAATTTCGTATTTGTAGAAGTCCTGCATCGC 563800 32 100.0 35 ................................ ATCCGCTGTGTGAGCGTGCATGCAATCATCCGGCG 563733 32 100.0 35 ................................ TCGACAACTGGAGGTTCGTCCGCGAAAACATCTTC 563666 32 100.0 34 ................................ AGACAAAGAGGCCGACACCGCTGACGATGAGGAA 563600 32 100.0 35 ................................ ACTTCTTTGAGAACCATCGAACGCAGCTTGTCGGC 563533 32 100.0 34 ................................ GGTTGTGGAACTGTTGATGCGAGGGTAAGCTAAA 563467 32 100.0 33 ................................ CACTTATCAACAACCGTAAACTCATCGGACGAT 563402 32 100.0 35 ................................ TGTCGGCGAATGCGGGACTACTCCGCGACGGTCGC 563335 32 100.0 36 ................................ ACGTCGTCATGTGCCGACTTTCCCATCTCTCAACCC 563267 32 100.0 35 ................................ CGATGAAGCCGGATAATGTCACCCGGAAAATCCTC 563200 32 100.0 34 ................................ CTTCGTGAAAGCTCTCTCAAAATCAGACCAGTCG 563134 32 100.0 34 ................................ CTGCCCAATTGGTTAGCCAACGCGAGACGCACAA 563068 32 100.0 35 ................................ TTGGCGAGTCTCACGTGATTGGCGAGACTGGCGGG 563001 32 100.0 34 ................................ CACGGCGTGTCGGGAACATCTCCGGCACTGAATG 562935 32 100.0 36 ................................ TGATCGACGGGGAACGTGTTGCTGATGGCACGACGT 562867 32 100.0 36 ................................ TGATCGACGGGGAACGTGTTGCTGATGGCACGACGT 562799 32 100.0 35 ................................ TGGAATGTGTTGGGGTGTGTTGAAAATGGGTTTTA 562732 32 100.0 33 ................................ CGGTGCTGTCGATGTCGGCGTCAGCTTGCTCTG 562667 32 100.0 34 ................................ CGTTGGTAGTCCGTCACTCAACTGGTGAATGGGC 562601 32 100.0 33 ................................ GGGAACGGTGCGACGCCTCGACTAGCGGTGAAG 562536 32 100.0 33 ................................ CACCAATCCATATTCTTGAGTTTGTCGAACATC 562471 32 100.0 36 ................................ GTGACCACAAATGCACCGTTAATCGTGTCGATGTGT 562403 32 100.0 32 ................................ ACGTCGTCGTGGGCTGATTTCCCCATCTCAAA 562339 32 100.0 34 ................................ CATACCCAGACGCGGGGCTATCACCAAACGCTCG 562273 32 100.0 38 ................................ TGGAATGACACCGTCCGAAGCTCGCAAACTAGCGAAAG 562203 32 100.0 35 ................................ TACAACACGCTGTGGCAGATGGGCGTGTTGTCTCC 562136 32 100.0 35 ................................ ACGTTTTTACCGTTGATCGTCAGCGTAAACGTGTC 562069 32 100.0 35 ................................ ATGCTGGTGGACAACGTCAGAGTTGAGGGCACACC 562002 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ====================================== ================== 50 32 100.0 35 ATCGCGTCCCCCGCGGACGCGCGGATTGAAAC # Left flank : TTTTTGATGTACGTTCTCGTCACCTACGATGTGGCCACTGGTGATACCGAAGGCCGTCGCCGCCTGCGTCGCGTTGCCAAGACTTGCTTGGACTATGGTCAACGCGTACAAAACAGCGTGTTCGAACTGTCAGTCGATCCCGCCCAATGGACCGAATGCAAGAACCGCCTGCTCAAAGAAGCGGATGTCGACGAGGACAGCCTCCGATTCTACTACCTCGGCCAAAACTGGCGGAAGCGCGTCGAACATCACGGTGCCAAACCAAGTTGGGATGTCGACGACCCCTTGATCGCGTAGTCCACCCCACCGCTGATCACCTCAAGAGCGGACCCTAAGCGTGCACGAAAATCCTGGGAGGTTCGCGATTGCCTCAAACCTTGATTCCAGCAGAACTTTCGACGACGATGCATCCTAACATTTGCACACAGATTCGTTGCTGGCCGGACATTCGCGATTTTGTAAACGCAACTTTCGCCCACATCGAAACTTCCGCAGATGCG # Right flank : TACCTGCCGCTGTCTATGTTGAAATTGGCAGCGACACCCCAGTGCGAATGCTTGATCGACAGGCCAAAGGCGGCAGTCGCTTGGCGAGATTCTGGACGTACATCGGCGACGATTCCAATCCGTACTCGGTCTACGACTTCACTGAAAGCCGCCGCCGCGACGGACCGGCCAGTTTTCTGGCGGACTATCAGGGCACGATGCACGCCGATGCCTACGGCGGCTACGATGGGATCGTCACCGGTTCAAACGGAGCGATCGTCCGCGTCGCTTGCGGAGCGCACATTCGCCGCAAGTTCGAGCAAGCCAGATCGCAATCGCCGCGTGCCAGCGCGCAGATGCTGGAGTGGTTTGGGCAACTCTATGACATCGAAGATCGCGTTCGGGAAACTTCGATCGCCGAACGTCAGGCTGTGCGTCAGCGTGAGTCTCAGCCAATCTTAGAGTCGATGAAATCCGCACTCGATGAGTGGGCTTTGCGTGAGCTGCCCAAGTCAAACCTA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGCGTCCCCCGCGGACGCGCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGTCCCTCGCGGACGCGTGGGTTGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [46.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 698788-698578 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAALXT010000003.1 Rubinisphaera sp. JC658 3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 698787 28 100.0 33 ............................ GTGATCCTTTTGAAACTTTCGGAAGGTGTGCTC 698726 27 96.4 33 .....................-...... GCTGACGCTTTCTCGGAGCTGCTGGCCGATTTC 698666 28 100.0 33 ............................ GTTCGCGACGAAGGCGGCCTGACGGCTGACAAA 698605 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 4 28 99.1 33 GAAGTCCCCATGCACGTGGGGGTGAACC # Left flank : CAGACGACACGTTGATCTGGCATTCCATGCCAGGCTCAATGCGTTTAAGCATGTCTGGAGAATGATGCTTATCACTCTCGTTCTTCAGAAAATTGTGGAGGACTTCTGTAACAGTAGCCATGCTACTCTCCATACGAGTTGCGCGAGCGGAATCTGGTCGCTCGCTGGGGAAAAGAGCGATCTCGGAGGTCGAGATTCGCGAAATAGATTCGAGCTGCCGGCCGTCAAATTAGAATTCAGGGACAGCCGCTCAAGAAATGGGTTCCGCCGCCGTAATCAGAGTTGACGGTCGGCGATTGCGTTGCCTGCCCGGTTTTGACGCAGAGAGCGAGTTCGGGCGGTCGAAAACTGTAAAGGAATGACAGTTACGCGACAGAACAGAAAGAATCTGTCACTCTGGTATTCTGACGACTCAAAAAGACAGTCGCAGAATCACTTCCCTACATACTACTAGAGTGCATATTTAAGTGAAATATAGGAAAAAAAATGCCAGCTTTGAC # Right flank : TCACGAAAGCTACCTCTTCACGTTTTCGTGGCGATATCCGCACGTGTGTCACGGTATTGAAGAGGCAACGGTTGTAATTGGAAGTCGACGTTCTCCTACCGGTTTTTAGCTCGCGGCAATCTTCCCGAAATAGCCATATTCGAGGTTGACCCTCAGCCACACCTGAGCAACACAACGGCAATATTGCTACCAATTTGCTACCAAATGAGCAACATCACGAAAAAAGGACTCACGGCGATTTGCCGTAAGTCCTTTCATACCATAGTGCCCAAGAGAGGACTCGAACCTCCACGGGCGTTAAGCCCACTAGGTCCTGAACCTAGCGCGTCTGCCAATTCCGCCACTTGGGCTGTGGTTGAATGTTCGACACGAAGTCTAATCAGTTCGAATCTGGTTTTCCAGGTCTGCGAATGCCCAACTGGGGATTTTTTGATCGGTTGCACATGAACGCAGTCGTCTTATCCCTGCTCTGTGGTCGACATTACTGGGTTCGGAACGAC # Questionable array : NO Score: 2.81 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAAGTCCCCATGCACGTGGGGGTGAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.40,-9.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,1.01 Confidence: MEDIUM] # Array family : NA //