Array 1 536057-537549 **** Predicted by CRISPRDetect 2.4 *** >NZ_OEYQ01000002.1 Salmonella enterica isolate STY7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 536057 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 536118 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 536179 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 536240 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 536301 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 536362 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 536423 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 536484 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 536545 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 536606 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 536667 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 536728 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 536789 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 536850 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 536911 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 536972 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 537034 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 537095 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 537156 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 537217 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 537278 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 537339 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 537400 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 537461 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 537522 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 553681-554607 **** Predicted by CRISPRDetect 2.4 *** >NZ_OEYQ01000002.1 Salmonella enterica isolate STY7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 553681 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 553742 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 553803 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 553864 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 553926 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 554029 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 554090 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 554151 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 554212 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 554273 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 554334 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 554395 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 554456 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 554517 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 554578 29 96.6 0 A............................ | A [554604] ========== ====== ====== ====== ============================= ========================================================================== ================== 15 29 99.5 35 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.19, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //