Array 1 8982-11050 **** Predicted by CRISPRDetect 2.4 *** >NZ_POYL01000034.1 Campylobacter concisus strain AAUH-49UCf 1109735, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 8982 30 100.0 38 .............................. ATAGCTTTTTTGATGAAATTGTTGCAAAAGCGACTAAA 9050 30 100.0 35 .............................. TAACAATTCAAGCCTTGATATGTAAAGCCAAATTT 9115 30 100.0 35 .............................. AAAGATATAACAACAATTTTAGAGAAGCACAAAGC 9180 30 100.0 34 .............................. TGGGTTGTGTAGGTATTACTCTTTTGGCTGCCTA 9244 30 100.0 35 .............................. CTAAAGAAAATTTGGATAAGTGCGCTTCTGCTATG 9309 30 100.0 34 .............................. TTTATTTTAACGTTTATGGGGTGGTAGGATATGC 9373 30 100.0 36 .............................. TCTTGTAAGAATATATGGCAGTTTGAGAAAGAAAGA 9439 30 100.0 35 .............................. TCTCAAAAAAAGCATCAATTCTCTCTTTTGCTTTA 9504 30 100.0 38 .............................. GTGCCTTTATCGGCTGTTTCTAAACCTTTTTGCCAAAG 9572 30 100.0 34 .............................. CATTTTACAAGAAAAACATCATCAGCATTATATG 9636 30 100.0 34 .............................. AAACAACCGAAAGTATTTGAATTTCAACTTTATA 9700 30 100.0 35 .............................. ACTAAAGATAATGGAGTGCTTGAGAAAACTAACTC 9765 30 100.0 35 .............................. CACTATGGAATTTACTTATTTCATTGACGTAATTT 9830 30 100.0 37 .............................. ACGAGGGCTTTAAAGAGCGTGAATATCCAGAAGTACA 9897 30 100.0 38 .............................. AACGAGTGGATCACTTCAGCGCAAAACCCAAGCGTTGC 9965 30 100.0 34 .............................. AAATTCCTATCGAACAAGTATCATTTACGCTAGG 10029 30 100.0 36 .............................. AATGCTGAAAGAAGCGCACGTGCCAAAGTAGAAGTA 10095 30 100.0 34 .............................. CTATAATTATCATTAGTCCGATATAGAGAATTTC 10159 30 100.0 35 .............................. AGCTCTCCAGCCAAACAAGTTGGGAAAAAAGTTTT 10224 30 100.0 37 .............................. TATGGCTTTTGCATCACTTTTAAATACTCCATCGTCA 10291 30 100.0 36 .............................. TTATTTGAAGAGTTGCCACTCTCTCCGCTAGAGTTG 10357 30 100.0 38 .............................. AGTATCTTTTTTCAGTAGAGCAAGACAGCGAAATAAAC 10425 30 100.0 37 .............................. AGCTCTTTCTTTGAAACAATGGGAGTTAGAGATGAAC 10492 30 100.0 39 .............................. GAAATTGTTAAATCATCTACACCTGAATATTCTAAAATT 10561 30 100.0 37 .............................. CATTTATACTGACTTAGCTAAGAAACGTGGAGATGCT 10628 30 100.0 40 .............................. AAATTTCGGCGCTCTGCGATCGTGCCTTGACGGATGGAGC 10698 30 100.0 34 .............................. ACAAGCTAAGCAGGCAAAAAAGTTTTATAAGAAA 10762 30 100.0 35 .............................. ATAGCAGACACGGAAGAATTAGGAATTTGATTAAA 10827 30 100.0 34 .............................. CATCACAAAAAGCATTCCAAGCACCAAGAGATTT 10891 30 100.0 36 .............................. TATCGTTTTGCACCACTATATTTATCACTTTTGGAT 10957 30 100.0 34 .............................. GACGAGGACGCTAAATTTAAGCTGCCTCCGCTAA 11021 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 32 30 100.0 36 ATTAGAATTTACTCCGTTGGAGTTTGAAAC # Left flank : AGCTAGATCCTCGCATCGGCTTTTTGCACGAGCCAAACTACCGCGCACTAAGCCTACATCTCGATCTTGCGGAGATTTTTAAGCCGATCTTGGGCGACACGCTGATTTTTAACATGCTAAATAAAAAAGAGATCACCGCAAAGGACTTCCAAACGGACGCTGGCAGGATAAAATTTAGCAACGACGCCGTGCAAAAGATCGAGCTAAAGATGATCTCGCGCCTTTGCGAGACGCTCACGGTGGGTGGCAGGGAGCTAACGTGGAGGCAGGTGATCCGCCGTGAGGCAAATAAACTCAAGAAGTGCATCTGCGAGGACGCGCCTTATGAAGGATTTAGGTGGGAGTGAAATCGCATTTTGATAAAGCGTTTTTTAAGATTTTAAAAAACTTGAATTTTAGGGCTTAGCGTATTTGCACATGGCTAAATTTTAGTCAAATTTAAGGCGAAAAAATATAGACTTCTTGCACTAGAACGCCTATAAAATAGGCTTTTTGGTGCT # Right flank : CAACACATAAGTGACGATTTAATTTTCATAGAAGAGATTTAAATAATAGATCAAATAAACAACAATTGCTATCTTACAAAGATGTATCAAACTGATGATAATATTGTTTTATGCAGATACTTCGAAAAACCAAAACCCCAGCCAATACAGCAAAAAAAGAAACTAGAAATAATAATGAAATAGACTAAGCATAAACCAGCTTAATATCAAGAGCATTAACAACCTTAAATATACTTTCAAATCTAGGCTTTGAATTCTCTTTAAACATCTTATAAAAGCTTTCTCTATTTAAATTTGCTTTCTTTGCAACGTTTTCAATACCTTTTGACTTTGCTATATAAAATAATGCTCTTTTAAATTCTTCAATATCGCCATCGGCTAAGACTTGATTTAAATACTCTTTTCTTAATTCATCAGTTGTTAAATAGTCTTCTAAATTAAATTTTGTAAATTCTTCTTTCATCTATAATCCTTTAATATCTCTTTTGCTTTTTTAATAT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAGAATTTACTCCGTTGGAGTTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.60,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [63.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 2 12247-11885 **** Predicted by CRISPRDetect 2.4 *** >NZ_POYL01000034.1 Campylobacter concisus strain AAUH-49UCf 1109735, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 12246 30 100.0 37 .............................. TATGACGATCAAAATTTATCACAAAATATAAGCTTTG 12179 30 100.0 37 .............................. TGGCTACCAAGATTGGTTATGGTGCAGAGGCAGTGAG 12112 30 100.0 37 .............................. CACGCCGTCTTTTTTATGTGGCTCAAAGCATCTTATA 12045 30 100.0 35 .............................. GGGTTTGCTTTAGAAATGTTGTAGGGGGCTATTGG 11980 30 93.3 36 .C..T......................... CAAGATCTGATAAGTGCGATAGAACAGAGGCTAAAT 11914 30 93.3 0 ........TC.................... | ========== ====== ====== ====== ============================== ===================================== ================== 6 30 97.8 37 GTTTCAAACTCCAACGGAGTAAATTCTAAT # Left flank : GCAAAAGACGAGATGAAAGATAAAATCTCTGATAAAAAAGATAAATTAAAAAAGAAAGCTTCTAAAACTAAAGAAGAGCTAGCTTCTAGCAAAGAAGATGAAACTAGTATGGGTGAAAAAGCAAAAGATGGAAAAGACAAAGTTGTTGACAAAGTAAAAGAAAAGAAAGAAAAAGCTGCTTCAAAAGCTAAATCTAAAAAAGAAAAACTTAAAGAAAAACTAGAGAAATAAAACATTTTAAAGCCTACTTGTCTTTACAAGTGGGTTTTATAAATTCATATATTTTTTTGTTTTAATTATAATTGACAAAAATTATCACAACCTTCTTCAATTTCATTGATCCGATAATTTGCTTTATTTTATCTTTTTTCAAGGCGTTTTTCTAAATTGTGTCAAAATAGCTGCCATCTGACTTTGCCAACTAAAAATTTATATAGAACTGCCCCGAAAAAACGACTATCAAAAGAGTGATTGCGGTTGTCGTCAACCATGTTTGGTGG # Right flank : GAACCGCCGATCTTCGGGTTATGAGTGTTATGCGCTATTTTTTATAAGTAGCCATTAAGCTACATTTGTTAAAATTTGCCCTATGAAAGTATTAAAAAGTTCAACATTTGATAAGTGGTTGCATAAGTTAAATAATCCTATTGTCAAGGTTTCTATATTAAGAAGATTAGAGCAGATAGAAGCAAAAGATCATTTAGGGGATTATAAATTTATCGATACAGACTTATGCGAACTTAGATTTTTTAATCGTGGTGGGTTAAGGATATTTTTTACTTTTGATGGCGATGAAATAATTATATTGTTAAATGCTGGCGATAAAGATAGCCAAAGCGATGATATTAAAAAAGCAAAAGAGATATTAAAGGATTATAGATGAAAGAAGAATTTACAAAATTTAATTTAGAAGACTATTTAACAACTGATGAATTAAGAAAAGAGTATTTAAATCAAGTCTTAGCCGATGGCGATATTGAAGAATTTAAAAGAGCATTATTTTATAT # Questionable array : NO Score: 3.15 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAAACTCCAACGGAGTAAATTCTAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.60,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 6803-7138 **** Predicted by CRISPRDetect 2.4 *** >NZ_POYL01000040.1 Campylobacter concisus strain AAUH-49UCf 1109741, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================================== ================== 6803 29 100.0 46 ............................. GTTATTGTGTTTTTTAGTTTTATGATGCCTGCTTTTGTATTTAAAC 6878 29 96.6 48 ........................A.... CAGCTTACGGCATATTGCTTTTCACCGATGACTATTCTGTATTTAAAC 6955 29 100.0 43 ............................. TTTTCGTAGTTAGTCAAAACTTCTATGTCTGCATAATTTAAAC 7027 29 100.0 52 ............................. CCACTTTTTCCGTATGTGTATCCGATCACTTCAAAAAGCGCGGAATTTAAAC 7108 29 86.2 0 ............C..C.........CG.. | A,A [7131,7133] ========== ====== ====== ====== ============================= ==================================================== ================== 5 29 96.6 48 AAATTTGACCCGATCAAGGGGATTGAAAC # Left flank : TGCATACCCAAAGGCTCCTCGCACCTGCGAGCCAATAAAAAATGGCGGCTTTTGTGACGGCTCAAATTTCACTCTAAGCTCGGCATACCTCATCTAAACTCCTTATCTTCACATAGTCTAAAACCACGCCCACCATGCTCTTTTTTAGAGCATTTTTTCTATTTATTTTAAGTTTGGGGATAAATTTATTAAGCTCTAGTAGTTTTATCAGCATGCCAAGACTATCTCTTGTCGCCCTTATATCGCTAGAAAAGGTCAAGATCATATTAGTTTCGTTATTCACTTCAACGCTCGATTTTAAAATTGTCTTATTATATATGATTTAAAGGTAAATGTTTATGATTTTTAAATTTTTGTTTAAAAATTATTATTTTTTGTATATTTTGTGCGTACCTTCACCACTTTTGATTTTTAGCTTAAATTTCCATCTTTTTGGCTAAAATTTCAAAAATTTGTGATTTTAAAGATATTTAAAATAAGTTCTTTTACTTATCATTGTT # Right flank : CCCATACCACATTTGAAAAGGTAAATTCAAAATGTTTACTAAAAACCTAGAACACATATTTACAAAAGGTGCTTTAAGCTCTGCATTTGACGAAATTTCTGCAAATTCTTTGGGTTTAGACGAGATCTCATATGCTGATTTTAAAAAGAAATTTGACGAAAACGCAGACCATCTCATACGCTCATTATTAAATGGCACTTACACGCCAGAACCGCTAAGAAAGATCAACATCCCAAAAGAAAATCGCAATGGCGTAAGACCCATAGGCATATCCTCTATAAAAGACAAACTAGTTCAAAAAGTCCTATACTCAGAGCTCAGTCCATACTTCGACGAGACATTTTTATCAAATTCCTACGCCTACCGCCCACACAAATCCACCTACAAAGCCATAAATAGAGCCAGTAGCTTCATAAATGAAAATTACTGCTGGATACTAAAGGCCGATGTAAAAGACTTTTTCGAGTCGGTAAACCACTCCAAGCTACTACAAATTTTGC # Questionable array : NO Score: 8.76 # Score Detail : 1:0, 2:3, 3:3, 4:0.83, 5:0, 6:0.25, 7:-0.12, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AAATTTGACCCGATCAAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.62%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.10,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [85.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA // Array 2 10123-11660 **** Predicted by CRISPRDetect 2.4 *** >NZ_POYL01000040.1 Campylobacter concisus strain AAUH-49UCf 1109741, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================= ================== 10123 37 100.0 37 ..................................... CTTCAAGAGCCTCCTCTGCTGTTTGGCAACGAACTAA 10197 37 100.0 38 ..................................... GCTCACACTAGCTAGTGCTTGTGGCACCTTGATGTAAG 10272 37 100.0 35 ..................................... CTTTGACTACTACATTGTAGTAGCCCCTATTTGAA 10344 37 100.0 41 ..................................... CTCTGATAGCTTCTTTACTTCTCTCAAACACTCCTCAGCAT 10422 37 100.0 35 ..................................... AGCATTAGAGAAATTGTTTTGTTTCTCGCCTTTAA 10494 37 100.0 36 ..................................... AGTCTTGAACTGCTCTCAAAGCACCTTCTGCTGTGG 10567 37 100.0 39 ..................................... TTCAATGTTTTGGAGACTTTGTCTCCATTCATCTCGAGT 10643 37 100.0 35 ..................................... GAGGTGTCTTGATGTAGGCATGAATGTCCTCTGTT 10715 37 100.0 36 ..................................... ATCATAAGCCTCCTCGGCTGAGGCACACTTTATCAT 10788 37 100.0 39 ..................................... ACTTGGTAAGTATGTGAGTTGTTTGGCGATCTTTTCGCC 10864 37 100.0 42 ..................................... TCTCAGAGCTTCCACTGCTTCTTCAGCAGTTTTTGCTCTAAT 10943 37 100.0 39 ..................................... TTTAGCCATTTGATAGCCCTTCGCAACTACATTATAATA 11019 37 100.0 40 ..................................... CCTTTGTTGTTTCTCTCCCTTAATAACGCAGTTGTACCAA 11096 37 100.0 39 ..................................... AGTATCTTCAACATTGATCTCTAGAAGCTCAGCAACTTC 11172 37 97.3 34 ......................T.............. TTAAACAGATTTACACACCACACACTTTTAAGCA 11243 37 100.0 37 ..................................... CTTGTGGTATATAATTGAGAGATCTTTCGATCTTCTC 11317 37 100.0 45 ..................................... CCGTTCATCTCTAAGATGCTGACTTTCATTTGATTCTCCTTTAAG 11399 37 100.0 38 ..................................... TGTTTCCTCTGCGTTAGAGAAACGTTGCTGTTTCTCAC 11474 37 100.0 37 ..................................... AAGCTCGATGGTACTTTCACGTAGTATGTTTTTTCAG 11548 37 100.0 36 ..................................... GCCTTGTTATCCAAAGCGTTTATTTGGGTTTCTATC 11621 37 97.3 0 ....................................T | C,AA [11651,11653] ========== ====== ====== ====== ===================================== ============================================= ================== 21 37 99.7 38 ATTTAAACAAATTTGACCCGATCAAGGGGATTGAAAC # Left flank : GCTTTGAGCTATGCGATAAAAAAGGTATCTTTGAGATGCAAGAGCTCTTTGTCTAGCTTATGTCATTCTTAAATTTCTATTGGATTTTCGATTTGCGAACTTTTTTAGCTGAAATTTGACCCTTTTTGGCTAAAATCTCGCGAAATAGGTTCGCAAATCTAGTTTTTTCAAAATATCTCTCATATATTTGCGAACTTTTAGTTATGCTTAAGTTTAGGATAGCCTATTTTAGGACCTTGCGAAACTTATATACCGCTTAAAGTTCGCAAACCTATAAAATTTGAAATTTTTAAAAGAGATTTGCGAACTTTTTTAAGATGACAAATGCCTAAATTTAGGGGTTCTTTCACTTATCATTGTTAATTTTATGGAGTTAGTATTTTTTCATACCCATACATTTGCGAACTTTTTTGAGCTTTTCGCGAATTTTGGGTATCTTTAAAGCCGGTTTCTTAAATAATTTTGCTAATTTTTCCTTTGCAAAAATAGTCTTTTGGGCT # Right flank : TTTGGTAAAGTGTAGGTAGTGGCTTATATTGTTATTTGTAAAAATAAATGAGTGGTGCTTATATGCGTTTATTGGATAAATTTAGATAAGAATAGATTGGCTTAGATTTATGAAAAACTACAATAAAGATAGGTTTTTGTGATTTGCGTAGATAAATAAAAGCTACGAAAACGAGCCATGAATTTTGCTTCATGGCTGCATAGGCCAACTATTTAGAAGTTGGCTTCATGCGAAATGTGCCCTTAGTGGTTTGGACTTTGGTGTAGCCACCAAAGCTTTGGCCAACTTTTTGGTGAGCACGAGCAGATGAGTAAGATCTGCTTGATGATGAAGAAGACTTTGAGTAAGAACGTGAATAGCATTTTGCCATTTTAACCCCTTTGTGTTGAATTATTTTGTTTTGTTGAGAGAATTATAAAGTGACGTATGGACATATTGTGTATAATTCATAAAAAACTTTAGAGAATATAAAGGATAAAGTAATGGACGCTCAGACCAGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAACAAATTTGACCCGATCAAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.10,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA //