Array 1 64122-64898 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCRQ01000001.1 Alicyclobacillus sendaiensis NBRC 100866, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 64122 37 97.3 39 ..................G.................. GAGATCTGGAAGATCCTGTATGACTACCATAATCTATAT 64198 37 100.0 37 ..................................... TTGGCAAGCCTGGGAGCGATACGATCCGGCAAAAGGT 64272 37 100.0 37 ..................................... ATCAGGCAAAGGAATGCCGCGCACGTCTTCCACTGTG 64346 37 100.0 36 ..................................... GAGCGGTTCGGTTCGGAGGCAGCGCTGGTGTAATAC 64419 37 100.0 35 ..................................... CAACAGCGGCCTATGGACGTAGAGGGCGGTGTCTT 64491 37 100.0 37 ..................................... AGTACACCTGTTGAAACAGCGCATGGCCGAGGATGCG 64565 37 100.0 39 ..................................... GAAGTTGGATCAGGAGCCGCAGGAGCAGTGATCGTTCCA 64641 37 100.0 39 ..................................... GAAGTTGAGGTCAATGACTTTTCGATTGATGACATTGTG 64717 37 100.0 35 ..................................... CTCGACATCGACGCGGAGGGAATCCGCGAGGCGCT 64789 37 100.0 36 ..................................... TTGGCCGACTCGAGATAGGGCGCAAGGTCCGTTCTA 64862 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 11 37 99.8 37 GCTTCAATGGGGCCGCCGACGATCACGGCGGAGTGAC # Left flank : CGATGTGAAAGACGGCGTGATCGCCTACAAAATCGCGGCGCATGCAGCCGATGTGGCGAAGGGACATCCTCGGGCACAGCACTGGGATGATGCGCTTTCGAAGGCGAGGTTTGAATTCCGCTGGCGCGACCAGTTCCATCTCGCGCTCGATCCCGTCCGCGCCGAGCAGTTCCACGACGAGACGTTGCCGGCGGAGCCTGCGAAGACAGCGCACTTCTGTTCGATGTGTGGGCCGAAATTCTGCAGCATGCGGATCACCCAAGACCTTCGCGCGTACGCCGAGGCGCGGGGGCTGGAGCTGGACGACGCGATTGCCGAAGGCATGCGGGAGAGAGCCGAGGCATTTCGAACCGGCGGGAGCGACGTGTATCGCTGAGCGCTCGCCACCCATGCAAAAGGCCGCTTCGCTGAAGAAGCGGCCTTTGCTGTTGCGATTGAGTTGCCCCGCGGCGGCCTGGATCAGGGCGGAGTGACGCTGGGCGTGGCCGCGCCCCGGCCGG # Right flank : CCCTTGCCTCCACAGCCCGCTTCTAGCGCGGGTTTGCGGGCGAAAAACGCGAACCTACTCGCAGCGTGCCAAATCCTCAAACCATTGATGGTTGCATAATACCCTGTTTTTCACCAAAAGTCCAGTGCTGGCGCGGATTTTCCTCTCTGCGCGAACCCCCGGGCATTTGCACACCGATACAGGTTCGCGGATCGCGTACTCTGCAAGGGCTCTTCTCAGCATGCTCTAAGTCTCCCAGTCCCGCCGCCGCAGCATGCCATTGCATCGAATCCACGTGGCAGCGAGGCGTCCACGGGCCACGCGGTCCGCTCGCTTCTCGTTCCAGCCTTGTCCATCTGAGTATGATCTGCCTCTGACCTGGGCATCCTATGGCTACAACGAAAACAACGAGGGAAACAAGGGGGATGAACGGTGGAGGACGACAGGTTAATCCCCATCTCGGCGCTGCAGCACTACGCGTACTGCCCGCGCCAGTGCGCGCTGATCCACGTGGAACAGAC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTCAATGGGGCCGCCGACGATCACGGCGGAGTGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.20,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [16.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.68 Confidence: LOW] # Array family : NA // Array 1 41529-42157 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCRQ01000016.1 Alicyclobacillus sendaiensis NBRC 100866, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 41529 37 100.0 37 ..................................... CGTCCACGAAGTTAGGTGCATTCGGATCGGGTACAAA 41603 37 100.0 38 ..................................... TTCTACGGCCTGCTTCAGATCGGGATCTTGTGTCTGCA 41678 37 100.0 37 ..................................... CTGCTGTGGCTGTCGGTGTTGCGATAGTTTTGGTGAT 41752 37 100.0 35 ..................................... CACCACCCATGCTCCGGACAGTGATATTGGAACCC 41824 37 100.0 38 ..................................... AGCGCGAGAATCGCCAGATGGCGAAGTCACTGGTGAAT 41899 37 100.0 37 ..................................... CGCATCCTCAAGTAGATAATCATGCTCATCGTGCAAA 41973 37 100.0 36 ..................................... TACTTGGGGATGCTTCGCAGTGGCCGACACTTGTGC 42046 37 100.0 38 ..................................... CTTTCCGTGCGCGATCGGGGAACGTGTTTTTCCCGCGC 42121 37 91.9 0 ...............................C..TT. | ========== ====== ====== ====== ===================================== ====================================== ================== 9 37 99.1 37 GTTACTCCGCCGAGATCGTCGGCGGCCCCATTGAAGG # Left flank : AGGCGAGATTGAGAATGGTTCTGCGAATGCGAGGTGGCGGTGGGACGAGGGGCGGATGGGTGGAGAGGGGCGAAGGAAAGCTGGGAATGCAGCGAGGGAGGCGCGCCGCTCGGCGCGAAGGTAAACCGAGCGGAGGAGCGCGAGCGGGGAGTTCGAGCGAGGGGACTTCTCGGGCCGTGACGACCGCCGAACAAGGCGCTCGGTGGCGCAGCGAAAGGCCGCAGTACAGGCGATGGCATGTCTGCATGGGAAGGATGCTGGTCGGTATTGGTCAGGGGCGCGGTGATAGGGGGTTCGAAAGTTCCCGCGAACCGCGAACCTCGATCGATGGCTCAGACCATGGGGGTTCGCGAAATTCGTGGAGGCCGCATCAGGACTGGATCTTTTGCCACAGGGAGGGTATGATGAAGGAGAGGAGCGCGGCTGTTTCGGACCGGCGTACAAGAGGTTCGCGATTTTGGCCTGGGATCCCGCGCCAGAAGCGGCATGTAGGGAGTAGG # Right flank : GATGGAAGGCATCTGGATGTCAAAGTGACCGCGCTCCTCGCTCGGACCAGCGACAGCTGGTCCTTTTTTCTGCTCACGCTGTCGGAACAGCCCTCTTCAGATGACCATAACCTAACGTTGACGTTAGTTTCCGATTGGCGTAGACTTGGCGGTGGTGTGCGAGGAGGTGGAAGATGGATCGCGACAAAGCGTGGACCGTGGAGGCCGTGGCAGAGCGGCTGGGCGTGACGCCGCGCACACTCCACTACTACGAGGAAAAGGGCCTCATTCCGGAAGTTCCGCGAACACCTGGCGGGCATCGCGTGTATGACGAGGACACCATTGAACGCATTGAACACATCCTTCGCCTCAAAGAAGCGCTCGGCTACTCCTTGCAAGAAATTCGGTCCATCCTCGACACGGAAGATCGGTTGAAGACGTATCGAACGCGGATTGCAGAGGGTCAAGAGCCTGAGCACAACGTGGAAATGCTCGCCGATGCCGTTCGGCTTCTGGAAAAC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACTCCGCCGAGATCGTCGGCGGCCCCATTGAAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-13.10,-13.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 365-36 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCRQ01000033.1 Alicyclobacillus sendaiensis NBRC 100866, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 364 37 94.6 35 .T....T.............................. TCTATGCAGAAGATGGTGAAGGATATGTGGGATCA 292 37 100.0 36 ..................................... ACAGACTTCACTGCTGGTATATTAGACAGACAACAA 219 37 100.0 36 ..................................... TCCTACCGGGCCTCAGCAGAGCTCAGGGCCTACATC 146 37 100.0 37 ..................................... CGGACGAGTTCGTGTTTGTCACCGTTGGCTTTCGCCC 72 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 5 37 98.9 36 GCTTCAATGGGGCCGCCGACGATCTCGGCGGAGCAAC # Left flank : TTCCTCGAGTGGAGACAAGCCCTGACGGAACCTTTGGCTTCTATCGTCGAATCCGCGCCCCGGGCGCGAGAATCGTGGCATCGGCATGTGAGGCACAAGTGGACCATGACAGCCGTGATCCTGGGACTTAAGCACACGTTCGAGGACTTCGTCTTATGGGGATTCGGCCTTCGCGTGTGCCTTTGGCGTACGCGATCAGATACCGCACCAGCGCGTAGATGGCATCGACAATGCCGGCGCCCATAAGCGTCTCAGAGGTCCACACACCACAGAATTCAAAATCTTCTGATGGCGAATGAGAGGAATCTTCTCCGAAACCACGAAAAAGACCGCTCTCAGAAACCGACCCATCGAAGTTTGTCAAGCAACGAAAGGTACTTCACAGCCTCCGGTGGATTGGGCTTCGTCAGTCTTGCTGACCATTTCACCCATTCGAACACTCCCACTTTACAGAATCTCGCATGGTGCACGGTTCAACAGAAGCCTATGTCTAGATGCTG # Right flank : CGGTTGCGTCGCTTGACGCGCTAGAAGAGTACATTG # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTCAATGGGGCCGCCGACGATCTCGGCGGAGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-13.10,-13.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 1 622-141 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCRQ01000078.1 Alicyclobacillus sendaiensis NBRC 100866, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 621 36 97.3 36 .............-....................... AATCCATTCGAAGTGGTAACCCAAGTCGAACCACCT 549 37 100.0 35 ..................................... GCATAGGGATAGGCGGAGTTAAGGTCATATCCGTA 477 37 100.0 38 ..................................... AGCTGGAAACGCCGCTACGACAAGCGGCAGGACGAAAT 402 37 100.0 36 ..................................... CTGTATCGATCCTTGCCTACGTATTATTTTGACTTC 329 37 100.0 41 ..................................... TCACGCCTGGTACCGTGCGATTGAGCGAGCCGGCGTGCCGC 251 37 100.0 37 ..................................... GTAGGTATGTAGGGATAGTTAGGGATACTTAAGTGAG 177 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 7 37 99.6 37 GCTTCAATGGGGCCGCCGACGATCTCGGCGGATCAAC # Left flank : GACATCGAGCTGCCTCTCCTGACCCACCGACAGTTTGGTCGCGATGCCTGGATGCTCGGCAGCCTTTGGACCACCTACGCCATCAGCTCGCTGGCTGGGGCGGCGTGGAGCAGCTGGATCTCCAAGAGACGCAGGACCGGCGTCGTGATGGCGATGATGGTCATTGGATGGGGCGCGGCGTTCGCGCAGCTGTTCTGGATCCACGCCTTCTCGATGCTTTACGTGGTCCTCGCATGCGCTGGCGTCCTGTTTGGCGGGTATCCACCGCTGGCGCGGACCGTGGTCCAGCGCTCCGTGCCGGTGCAGGTCATGGCACGCATCATGGGCCTACGGGGAGCACTCATTGCACTTGGCCCGCCGCTCGGTTCGTGGCTCGGCGGCCTGTTGGGCAGATGGCTCAGCCCTTCGCACGCCATTGCCTTGGTCGGTATGACCATTGCAGTATTCGGATGCTGGCTTGGCTCACGGGGTGATTTTAGGAAGATAGAAGCTTGACATCG # Right flank : CGCCACGCTCCTGACTCCGCTCCCCGCGCGGGATCTCAGCCCAAAATCGCGAACCTCTTCTCAGCGGCTCATTTCCACCACTTCCAACTGCCCTCATGATACCCTCTCTCCGCCCAAAAATCCAGTCCCCACGCGGAATTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTCAATGGGGCCGCCGACGATCTCGGCGGATCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-13.10,-13.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA //