Array 1 295914-296490 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUTX01000003.1 Salmonella enterica strain CFSAN071944 CFSAN071944_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 295914 29 100.0 32 ............................. CCTGCGTGCGTGCAACGGGTAACTAAGGGGAA 295975 29 100.0 32 ............................. TCCATAGTTGCCGTTTCAACGGCTAACACTGA 296036 29 100.0 32 ............................. GCTACGAAGCGCCGCTGGCCGTGGCCTATACC 296097 29 100.0 32 ............................. TGCCGAAACTGGTGACAGAAACGGTGCAAAAG 296158 29 100.0 32 ............................. TAACGGTTGCCGAGGTTCGCGCCGCTGTGGCC 296219 29 100.0 32 ............................. GTTTGCAGAGATTGAGCCGTTCCCCGCTGCTG 296280 29 100.0 32 ............................. CGCAATTACACTGACAATTCGTCAGCGCAAAC 296341 29 100.0 32 ............................. AAGGTTAGCGTTGTCATTGATCTGGTCGGCAA 296402 29 96.6 32 ............T................ AGCGGCTAAACCTGCCGGTTATCGCTGAGCAG 296463 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 10 29 97.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCAATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATGATATACATTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 313724-315830 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUTX01000003.1 Salmonella enterica strain CFSAN071944 CFSAN071944_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================== ================== 313724 29 100.0 32 ............................. CTGGCCGCGAGCGCCTGGTATACGGTTTATGA 313785 29 100.0 32 ............................. TAGCCGGGTGTTATGCGAGCTCGTCAGGGAGG 313846 29 100.0 32 ............................. CCAGCGGCAACCCGATCACCATCGAAGAAGAC 313907 29 100.0 32 ............................. CGATACGCATTAACCAGCACGTCGAGTCGGTC 313968 29 100.0 32 ............................. CCAGTTTGTTGATCACGTCTGCAACCTGGCTA 314029 29 100.0 32 ............................. TCGTGATCGACGAGGCCGCATTCCACGAGGCA 314090 29 100.0 32 ............................. ATATCGCTCGCTTAAAACTCTTAGGAAAAAAA 314151 29 100.0 32 ............................. TCATCCTAATTGTCAGCGTCCCCCCCACTGGA 314212 29 100.0 32 ............................. TGAAGAATCCAAACTCCGTGACTTTGAGAAAG 314273 29 100.0 32 ............................. AAATAGGTAAGGCTATGCGTCGCGGTGATAGC 314334 29 100.0 32 ............................. GCTTTCAAGTTATAATTGGTACACTTCTTAGT 314395 29 100.0 32 ............................. TCTTAATACGCGTGAGATCCCGAAATTTTTTG 314456 29 100.0 32 ............................. GATTGACTTAAAGATGAATGTAGAAAATATTA 314517 29 100.0 32 ............................. TGGGCGAAAGCATTTAATCGCGCAGCGGGCGA 314578 29 100.0 32 ............................. ACGCTGGCAACAGCCCCACACTCATCCGCCAT 314639 29 100.0 32 ............................. CTGTATGAATTACCCCTGCTGCCGGGTTCTTC 314700 29 100.0 32 ............................. CGCTTCATCGACAGCGTGTTGTCGCGGTGCTT 314761 29 100.0 32 ............................. GTAGCCTTCAGACACTTTAGCCAGGTTCCCTA 314822 29 100.0 32 ............................. AGCGAAAAAAAAGACGACGAACTCGTCACAAC 314883 29 100.0 32 ............................. GCGGAGAATTATATATCGGAATGTTACAGGAA 314944 29 100.0 32 ............................. GTCATTTTCTTGTTAATGGCGCTTGCATTAAC 315005 29 100.0 35 ............................. CTGTGTGGTCTGTGCATAACGGTGTAACAGAGGTG 315069 29 96.6 32 T............................ CTGGGAAGATTGGGCGCTTTCAATATCTTCCA 315130 29 100.0 32 ............................. AAAAATAGTCCTGAACGATAGCCCGCGCGGTC 315191 29 100.0 32 ............................. CCGCAGAACAGCTCTGCTTCCTTTGCGGAGAC 315252 29 100.0 32 ............................. CAAACAATGAAATTTTATTTGACAAATTGGCG 315313 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 315374 29 100.0 32 ............................. TTCCGGTCCTGCCCACTATTCGACAAAATCAG 315435 29 100.0 32 ............................. GCTGATATCCGCCTGATTGGTGATCTGCGTCG 315496 29 100.0 32 ............................. CTGGCGCAGGTTCGCCTTTCGGGCCTTTGAGT 315557 29 100.0 32 ............................. AATAAACGTCTTTTGCTAGGTAGCATTCTATT 315618 29 100.0 32 ............................. AGTTCGCCAGCGGTGCCCGCGATCTGGAGCTG 315679 29 100.0 32 ............................. TCGTTTTTTTTATCGGTGTGGTTCGGTCGTAA 315740 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 315801 29 93.1 0 A...........T................ | A [315827] ========== ====== ====== ====== ============================= =================================== ================== 35 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGACTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATTTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCTAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //