Array 1 25208-23802 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGVT01000104.1 Clostridium botulinum strain 12LNR13-CD map unlocalized plasmid p1BKT015925 C-botulinum_12LNR13-CD_contig_104, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 25207 30 100.0 36 .............................. ATTTGGTAATGCAGGTATACAAGTAGTACAACAACC 25141 30 100.0 35 .............................. TGTGTTATTCAAAGCACACCCAAATAGCGAATTAT 25076 30 100.0 38 .............................. TTTAAATTGTTAAAATATTTTTTAAGTTCATTTTATGA 25008 30 100.0 37 .............................. TTAAGTATATTCCATTTTGATGAAAAACAAGCAATAC 24941 30 100.0 36 .............................. CAAGAAGAAATAACTTTTGAAGATAAAGAAGATTTA 24875 30 100.0 36 .............................. CAATGAAGAAATGAAAGCATCCACCAATGAGTATAC 24809 30 100.0 36 .............................. TTGAGTGAAAGATGGAATGTGTTTAAAATAAATGAG 24743 30 100.0 36 .............................. GCAAGGGATTATTATAAGAAAAATAAATGTGATATT 24677 30 100.0 35 .............................. GATATTGAAAGTGGAAGAGTAATTAAAGTTTGGAC 24612 30 100.0 35 .............................. ATTAGTTTACCACACTTTGGACACATTCTCATTAG 24547 30 100.0 36 .............................. CCGATAGTGTATTCTTTACCTTCAAATTCTACTTTA 24481 30 100.0 34 .............................. ATATAATCTTTTTTATGGAGGTGATACACTTGAT 24417 30 100.0 36 .............................. TGTTTAGCTAGGTAGTTTTGATAAACTTTAGTATTC 24351 30 100.0 36 .............................. TGAAATTGAGAATAAGCAAAAATCAATTCTTGTAAC 24285 30 100.0 35 .............................. TCTGTACTCTCTTCTATAGTCATTTTTAATAGTGT 24220 30 100.0 37 .............................. CATTTATATGGTTCTTGCTTGTCCGATTGACTTTATA 24153 30 100.0 34 .............................. TCGTAATTGTTAATTATTATTTCAATTTTCTTAT 24089 30 100.0 37 .............................. TATAAGTATAGTGATTTTAAAAATATTGATGATCTAG 24022 30 100.0 36 .............................. AAAGTAGTTATTTTGAAACTTATAAATACATTAATC 23956 30 90.0 30 .......A.......T..........T... TTGCATATGTTAAAATAGAAATAAATGTAG CAAA [23929] 23892 29 83.3 31 ......CT....T...-...A......... ATATTTAGTTTTAATTCGCAAGGATTAGTAT T [23879] 23831 30 83.3 0 ..............TT..A....C.....C | ========== ====== ====== ====== ============================== ====================================== ================== 22 30 98.0 35 ATTAATAGATAACAAGATTTGTTTTTAAAT # Left flank : AAAGAGCATATAGCTAATGTTCGATTTATAGAAGATATTGATATTGAAGATATTCATGATGATATAGCACAAATAAATAGTCTATTTCCTTACAGTATCATTAAAGATATTGAGGCTAACAAACCAGAGTATTGTGAAGATAGGATATCTTACTTTTTAAAAGAAACTATGCCAATTGGATATGATGATAAAGGATTGTATGATTATGATACATTAGTACATACAAACCATGAGATATATGAATTAAACAATACGAACAATATATATAAAATTAATAATAATATTCTATATTTCTTATAAATTTAGATATATAATAATAGAATTTTCCCAACTAAAATAAATATATATTATTAATTAAAGGCGTATAATACAATACTTTGATAGAGTTTTTGAATTAATTATTTAAAAAATTCAATTTGGTTGGGAAAATATAAGATGAACCGTTGATATATAATGGTTATAGAGAAAATACAAACGATAAAAATGGCTTTAATCCTATG # Right flank : GAAGTTTTAGATTAAGAAAGGAGGATTTTAAAGATGTTTGATTTAAAAATAGATAATATATATGCACATATAAACAAAGAAGCAAAAGAGACTTTATACCAACATTCTATGCTAACCCAATATTATTACAATAAAATAGATAAAACGCATAATTATACCGAAATATTAACAAAAATGATAAATGAAATACTAATAAAAGAAGATAAACAGTCTAAGGAAACCTCAAAATTTATATCGGATCTAATTATAAGAATGCTATATTATCATGATATAGGTAAGATTGGACTGGGATTTCAACAAAATCGAATGGATAACAAGTTAGATGAAAAATATATAGATTACACTTACCATAGTGAATTATCTGCATTGTTGTTTATAGATATAGAATATAATAATATTAAGGAATATACATTCAGTAATAATAGAAAACAAAATAATCAAACAAAAACTTTAATAAAAGATGTTTTATTAAGACTAAGCTTTTTAATAAAATGCCATCA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAATAGATAACAAGATTTGTTTTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:86.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.70,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [17-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 11180-12459 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGVT01000016.1 Clostridium botulinum strain 12LNR13-CD map unlocalized plasmid p1BKT015925 C-botulinum_12LNR13-CD_contig_16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 11180 30 100.0 35 .............................. CGCCTGAATATGTATTAATTGCAGGTGAAAGAAGA 11245 30 100.0 35 .............................. AGCTAAAAAGAATGGTGAATACCTTCCTGAAATTA 11310 30 100.0 36 .............................. GAATTAATAAAATTAATACAAGACAATACAATGGAA 11376 30 100.0 37 .............................. AAATTTGCCATATGCGGTCCCCAAAGTACCCATTTAC 11443 30 100.0 36 .............................. AAACCTACATGATGATATATGGAAAGTAGAGCTTAT 11509 30 100.0 36 .............................. AAGTAAGCTTTTCCAGTAACTCCCCTTACTTTTAAT 11575 30 100.0 34 .............................. TTAGTGCCATAGTTTGTACTCCAAATATCTAAAC 11639 30 100.0 37 .............................. ATAAAAATTTAAGATAAATTTAAGGGAAGACACTAAT 11706 30 100.0 36 .............................. TGAAGCAAGAAGAAAGAAGCGAATTTATAAAAGAGT 11772 30 100.0 36 .............................. TTTGCTTGTCTTTGTTTTTCTCTAACATACTCCTGT 11838 30 100.0 35 .............................. TCTATTAAAGATTTTAAAGCAAGATTTTCGCTTAT 11903 30 100.0 36 .............................. AGGTAAAGAACAAGACGATGAGGGATATTTTAGAGA 11969 30 100.0 36 .............................. TTTGTAACTGTAAAATCATTTAACTTTTTAATATCT 12035 30 100.0 36 .............................. TGTGATAGAGTAGCATTTAAATATAAGGTTCTAGGT 12101 30 100.0 35 .............................. ACATCTAATATAGTAATAGTCTTTTCTTTATCGTT 12166 30 100.0 37 .............................. AGAATTACGAAGACAGTATGAGAATGCTAGAGAACTT 12233 30 96.7 36 ..................G........... TTTGACAAGCCTGTTTTTTTATCCATTTTTGACATT 12299 30 96.7 36 ............T................. GAAATCGGTTGTCCTTTTGTATAATCTCTTAATCCA 12365 30 100.0 35 .............................. TTTTGTTTTGTTCAGTATCTTTTTTTGGAGTTCCT 12430 30 90.0 0 ...............T.T...........C | ========== ====== ====== ====== ============================== ===================================== ================== 20 30 99.2 36 ATTAATAAATAACATAAGATGTTTTTAAAT # Left flank : TATTATATTTTTTTTAAAAGTTGTATTAACAAAACTATATTTGTTATAAATAGGAAAATACATAAGGAAAATGGCAAGGTAACTGCCAAGCTTTAGCTTGTGCAGAGTATTTAGATATAAAATAGCTAAGAAGTATAAAGAGTCTAGTAAAGAAAATAAAATAAAAGTAGGACAAACAGTGTGTTTTTGTAGAGAATAAGGCTTTAAAATATGCATTTTATCAACTTATAAAATGTTAAGTGAAATTTATAACATGAACAATTCAAATAAAATAAAGGATAATGTTCTATATATGATATATTAATATAAACAATAGATAGAATTTCCCCAACCAATTTTGTATAACAACATTAGTAAAACATTGATTATATAAGGGTTTAAATAAGATTTAAGTAGAGTAAAGTTATTTGTTAGAATCGGTTGGGAAAATTCTAGTTGAAATATTGGTATATAAGGGTTATCATATAAATATGAACAATAAGAATGGCATAAATACTATG # Right flank : CCGCAAAGTTAAAGATTAATATATGTAAAGAACTACTTTATAGTAAGGTAGTTCTTTTTTTATTGCGGAGAAATAGGTTGGTTGTTAAATAAAGTCAAGCAAATCTTGAATAGTAATAGTACTATCTAATTCATAAAACGCCCTATATATACTTTCTATATCATCTACATTTATTCTCTTAATTGTTTCATAATAATAATTTTGAACTGTGGCAGGGCGAATTCCTGTAACATCACATAGCCATTTTTGATTCTTTTTATATTTACCCAATAAATCAGATACTTTGATTTTCAATTTCAACAATATCATCCTCCTTATATGTATATTATAAACTATGAAAGTTGTTTATTCAAACAGAAATGAAATAATACTACTTATATAGTTGACATACTACTATAAGAGTAGTATTATATATTCATAAGGTAAATGAAACCAACAAATTCAAAAATAAATAGGAGGTTTTAATTATGGAAATCAAAACAATTTATCTAATAATTCAG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAATAAATAACATAAGATGTTTTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:90.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 9960-12809 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGVT01000088.1 Clostridium botulinum strain 12LNR13-CD C-botulinum_12LNR13-CD_contig_88, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 9960 30 100.0 34 .............................. GCGTTTTTGATAGGATCATCAACTATCAATATAT 10024 30 100.0 34 .............................. TTGGGTCTTAACATAAAGTTATTTACTGCTTTAC 10088 30 100.0 36 .............................. ATAAAAGTAACGAGGAAAGTGATTGTACAAATAACT 10154 30 100.0 35 .............................. ATATTTTAAAGATAAAAAAATTAAAATAGTAATAT 10219 30 100.0 35 .............................. AGCGTAGATACAACTTTAATTTACGCAGAATTAGA 10284 30 100.0 36 .............................. ATTTTTAGTTCTGCACAAACGAGTGGAATTATAATT 10350 30 100.0 36 .............................. TAGTGTCTAACTACTCTATTTATAGATATATTGTAC 10416 30 100.0 37 .............................. TAATTAAATTATTTAACAAATTGTCTTTTGTATTACT 10483 30 100.0 37 .............................. TTACAACAAATGTACCATCTTCAAAATCCATTTCAAC 10550 30 100.0 36 .............................. TCAAAAACAGTACTCAATCCGGATTTTTCTATAATT 10616 30 100.0 37 .............................. TTTAATCACTCCTTTCTAAACTGGTCGAATTCGACCA 10683 30 100.0 35 .............................. AGAAAAATGGACAAGTCTTTGGCAAAGTTGTTTAA 10748 30 100.0 37 .............................. TGATATATTAGCATAAGTCGTCCCGCGAATTATAACT 10815 30 100.0 34 .............................. TTGCCCTCTATGAGATAATTATTGTCTTTAACTG 10879 30 100.0 35 .............................. AATAGTACACTAAAGGCGTTACTATCTGTTGCATT 10944 30 100.0 37 .............................. TGTCATAATCGCAAAATAACACAATAACCACATCCCC 11011 30 100.0 35 .............................. TAACCAGCAGTTTCCCAATATGGCGGATCACAGAA 11076 30 100.0 34 .............................. CTATCCTCTGGTATCTTATCTATATTTAAATTAT 11140 30 100.0 35 .............................. AACTTCAAGGGGCAAATTTTTGTAAAGTGAGGTTG 11205 30 100.0 36 .............................. TTGCGTGCTTATGGTTAATAAAAGTTATTTTACAGA 11271 30 100.0 37 .............................. GAACCTGTACCATATAGTATTTTTAAATTTCTAGTTA 11338 30 100.0 35 .............................. AAGTTTTCTATAAAAGTATGTTCAGCACTTGAATT 11403 30 100.0 36 .............................. AAGGTAACTACAAAAGACCCCGTAGTCTGGTATATT 11469 30 100.0 35 .............................. TTCCATTTTGTTCTAGCATCTGCAATCGCTACATA 11534 30 100.0 35 .............................. TACAAATGCAATACAGAATAGTTATAAATATTTTT 11599 30 100.0 37 .............................. AAAGATAATTTAAAGGGGTTTAACGTAATTACTTTAA 11666 30 100.0 36 .............................. GAAGAAAACTCACAGTTTTTAATAAAATCTATAATT 11732 30 100.0 37 .............................. ACGTCTTCTAATAGTCCTTCAAATTCTATTGGCATAA 11799 30 100.0 36 .............................. ATCTTTTTGTTTTTCTTCCGATCTTTGTACTTACTG 11865 30 100.0 35 .............................. TATTCTAACTTCACATCCTTTTAAAGGTCGCCATT 11930 30 100.0 36 .............................. TGGGAAAAGTTACGCACGAAACTTCTTTAATGTCTA 11996 30 100.0 35 .............................. TTTCCAGTGAGCAATAGAAAACAGTACCTTTTCTG 12061 30 100.0 36 .............................. CTTGATTTATTGAAACCATATTGGGAAATGGCGAAC 12127 30 100.0 34 .............................. AGAAAAATAACTTCTAAACTTAATTTCAATATAT 12191 30 100.0 36 .............................. TCAATTAAAATAAGGGCATTTCGAACATCTACTATG 12257 30 96.7 34 ...............T.............. AATTTTATATACATTTTTAAAATTTTACTAAAAA 12321 30 100.0 36 .............................. ATTAAAAGTTAATATATTTTTTAATTTAATTTTATT 12387 30 100.0 36 .............................. ATTCTAAGTATCCATAAAGCTTGTTGAGCCACATAC 12453 30 100.0 35 .............................. AATGAAATAGGCAATTCATAATCTACAGTGTTTAT 12518 30 100.0 35 .............................. ACGTTTGAATGTGCTAAAATATAATCTTCAACTGC 12583 30 100.0 36 .............................. CATGAAACAATAGCTGAAAATGAAGAGAGGGAACAC 12649 30 100.0 35 .............................. AAAATAAGACATGCACTTCTTTTGCCATCTTTTGT 12714 30 100.0 36 .............................. CACCTTCTTTCTCTTTTGGTATCCATATTTATTCTT 12780 30 96.7 0 ...............T.............. | ========== ====== ====== ====== ============================== ===================================== ================== 44 30 99.8 36 GTTGAACATTAACATGAGATGTATTTAAAT # Left flank : AAGCCATTTAGGCTTAAGGAGAAGATATAATGAGTAAAAAATTTAATTATAATTATGCATTTTTATTTTATGATGTGAAAGAAAAAAGGGTAAATAAAGTGTTTAAGGTTTGTAAAAAGTATTTAGCTCATTATCAAAAATCTGTTTTCAGAGGTGAGATAACACCTTCTAATATAATAAAATTAAGAGAAGATTTAAAAAAAGTAATAGATGAAAGTGAAGATTTTATATGCATAATTAAATTATTAAATAATAAAGTATTTGGAGAAGAAGTGCTAGGAGTAGATATTGAAACAGCAGAAGATTTAATTTTATAAAATTATTTTACCAACTGCTTCGAAAAAATAAAACGGTCAAAAGTGTTGATTTTACTGGTTTTCTATGTAACTTAAACTGAAAAAAATAAGTTGTTAAAATTGGTTGGTAAAAAATTAATGAAAGTGTTTATTTTCAATAGGTTTAGGGGTATAATAGAAACAAGGAATGGCTATTTTACTATC # Right flank : TGCTCTTGCTTTAATTTTTCCTCAGAAATATCTTTATTAAAGAAAGTCAACCATCTTTGAAGTCTATCTTCTTTTAAATTCTTTTCTTCTAGTTTGTTAAATTTAGGAACCTCTATAAAATGAATTTCAACTAAGTCCGTTAACATATAGTCTTTGTATTCATCTTCCCAAAGGTGAAACTCAGTGTGAAATTTATCTAAGTTTATATATTCAAAATCTAGTATGTTTATAGTTATTACCTTTTTAAAATTTCTATTATGCTTTTTTTATTATTAGAACTAATATCTTTAAAATGACTAGTACACTAATTAAAATAAATAAAAATTTTTAAAATGAAAATATAAAATCATCGTTTACCAATAATCAAGCTATATTTTGACAAGTACCTGTTACCCTAGTGAGAAGGTTTATCTAAGAACCTGTTGCTAAAATAAATTATCCATTGTTTTTAGATATGTGATGAGAACTTATATATCCTCCATTTTCACTTTTAGATAAAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //