Array 1 288293-289785 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYIX01000001.1 Salmonella enterica strain BCW_5843 NODE_1_length_467439_cov_4.02912, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 288293 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 288354 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 288415 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 288476 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 288537 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 288598 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 288659 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 288720 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 288781 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 288842 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 288903 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 288964 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 289025 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 289086 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 289147 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 289208 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 289270 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 289331 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 289392 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 289453 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 289514 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 289575 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 289636 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 289697 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 289758 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 305917-307045 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYIX01000001.1 Salmonella enterica strain BCW_5843 NODE_1_length_467439_cov_4.02912, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 305917 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 305978 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 306039 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 306100 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 306161 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 306222 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 306283 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 306345 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 306406 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 306467 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 306528 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 306589 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 306650 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 306711 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 306772 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 306833 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 306894 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 306955 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 307016 29 96.6 0 A............................ | A [307042] ========== ====== ====== ====== ============================= ================================= ================== 19 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //