Array 1 316-48 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUUI01000043.1 Methylomonas lenta strain R-45370 contig_139_(1..7857), whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 315 28 100.0 32 ............................ AAAAGATCAAGAGTTATATGACGAGCTGATTA 255 28 100.0 32 ............................ TGAACGAGAAACCGGCTTAGTGTCGACGATAT 195 28 100.0 32 ............................ ACCGGCATCGGCTACGGCGTGTATGAAAAGGT 135 28 100.0 32 ............................ ATCACATTACGACATTGCATACCTACACGAAC 75 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 5 28 100.0 32 GTCCGCTGCCGCACAGGCAGCTTAGAAA # Left flank : TGCACCAGTATTCGACCGGTGCCGGATAAAGTTTCTGGATACGCGATTTATCAGCGTCAACAACCCAAAACCAATCCCGCCCGTCTGGCAAGGCGTTATGCCAAGCGGCACGATATGGATTTTGAAACGGCGTTGCATGACCCCATAAACCTAGAAGACAATGTCATCCCCAACACCAACTATCAACAAACGTTTCGCTATTGCGATATGCCGCCAAAAGCGATTTCTACCCCGTTTATTCGCCTGAAAAGCTTAAGCAGTGGGCAAGACTTTTGTTTGTGGATCAAGAAATCGGCTGCATCCGAACCTGTCGTCGCCGATTTCAGCAGCTACGGCCTAAGTGCCTCGGCTACTGTACCCGAGTTTTGACCAAAGTTTTTCTGCTCTTTAAAAATATGATTGAAAACAGCTAGTTGCGCGCTGCGGTTTTGAGGATGGGTAAATTGGGGTAAATACCTTGAAAACCGCTGTGCAACTGGCTTAGAAGTTTTATAAAATCA # Right flank : AATATTATGAGTATGATCTGGTGAATCATTCCCGTCCGCTGCCGCACA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCGCTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 7969-8116 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUUI01000007.1 Methylomonas lenta strain R-45370 contig_106_(1..8116), whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 7969 28 100.0 32 ............................ TGGAAGCTGTTACGGATTTTAAAGTACAGCAA 8029 28 100.0 32 ............................ TCAGTTGCACACATTGGAATTTCGCTTTTAAA 8089 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 3 28 100.0 32 GTCCGCTGCCGCACAGGCAGCTTAGAAA # Left flank : TGCACCAGCATTCGACCAGTGCCGGATAAAATTTCTGATTATGCGATTTACCAGCGTCAACAACCCAAAACCAGTCCCGCCCGTCTGGCAAGGCGTTATGCCAAACGGCACAATATGGATTTTGAAACGGCGTTGCATGACACTATAAACCTAGCAGACAAGGCCACCCCCAATACCACGTATCAACAAACGTTTCGTTATTGCGATATGCCGTCAAAAGCGATTTCGACCCCGTTTATTCGCCTGAAAAGCTTAAGCAGCGGGCAAGACTTTTGTTTGTGGATCAAGAAATCGGCTGCATCCGAACCTGTCGTCGCCGATTTCAGCAGCTACGGCCTAAGTGCCTCGGCTACTGTACCCGAGTTTTGACCAAAGTTTTTCTGCTCTTTAAAAATATGATTGAAAACAGCTAGTTGCGCGCTGCGGTTTTGAGGATGGGTAAATTGGGGTAAATACCTTGAAAACCGCGATGCAACTGGCTTAGAAGTTTTATAAAATCA # Right flank : | # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCGCTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.90,-11.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 2078-2225 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUUI01000060.1 Methylomonas lenta strain R-45370 contig_154_(1..2272), whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2078 28 100.0 32 ............................ AACAAAAGATTTCAGGAAAAAATACTAGAAAT 2138 28 100.0 32 ............................ AGACAGTTAAAATCGCCATTGACTGCCACTAC 2198 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 3 28 100.0 32 GTCCGCTGCCGCACAGGCAGCTTAGAAA # Left flank : GTTTTACTCGAAAGAACGTTCAGCATCCGACTTACAAAGCATTTGCAGAACTTGGTAAGGCGATTAAGACTATATTTCTTTGCCGCTATTTGCATGACGAATCTTTACGCCGGGAAATCCATGAAGGCCTGAATGTGGTTGAACAATGGAATGGTGCAACTGATTTTGTGTTTTTTGCTCGTCGCGGTGAAATGTCGAGCAATCGCAGGGAAGACCACGAGATTAGCATGTTAGCCTTACATCTCATTCAAAACTGCATGGTTTACATCAACACGTTAATGATCCAAAAGGTGTTAGCGCAGCCACACTGGCAGGGCAAGATGACAACACGAGACTACGCCGCGTTAACTCCCTTGATTTGGGAGCATATCAACCCCTATGGGCGATTTGACCTTGATATGAACACCCGGCTTGACTTACCGTAATGGAAATGGCGGCTGGTGACACGACTGCTTGTTTTACCCCAAATAACTGATAACCCTCAAGCCCGTAGTCACCTC # Right flank : GCCAACCGTGATCACCACATCCCAATTTTGCCGTCCGCTGCCGCACA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCGCTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //