Array 1 298960-292869 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM002637.1 Xanthomonas campestris pv. raphani strain CFBP 5828R chromosome, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 298959 28 100.0 32 ............................ TGCGAGTACGCGCGACGTGCGAGTCAGTTCGA 298899 28 100.0 32 ............................ GCTTGGAATCCGGCTGCGCCGGCGGGCGAGGG 298839 28 100.0 32 ............................ TGTCACCGCAGAGAGGCGATGACCGGTTACCC 298779 28 100.0 32 ............................ ACCGTGAGAGAAACCAATGAAGCGGCTAGGAA 298719 28 100.0 33 ............................ ACGAAGACACCTTTAGATTCGACAATCATGCTT 298658 28 100.0 32 ............................ AGTGCGCCAACGGCCTTGGTAGCGGTGGCGGT 298598 28 100.0 32 ............................ ACCAGCGCGCGTTCGGCGTCGTCCTTCAACAG 298538 28 100.0 32 ............................ TGCAAGGGCGTCAGCCACAGCGCGGTCGCCAA 298478 28 100.0 32 ............................ AAGAAACCGAGCGCCGCATGCGACGCGACTGG 298418 28 100.0 32 ............................ ATGCGCCACCGGGTAAGGCTGGCCCTTCGGCC 298358 28 100.0 32 ............................ TCGCAGGAGGCAACACAGCGCGCGCTGAGCGC 298298 28 100.0 32 ............................ ATAACGGTGCACCCAAGCCGGACTGCAATCTG 298238 28 100.0 32 ............................ GCGCACAGGGTCCGCCTGTGACCGCAGCAGCC 298178 28 100.0 32 ............................ TTGCACATCGACAAAAAGACCACCATTACCAT 298118 28 100.0 32 ............................ AACTGATAGCCCGGAGCGAGACGCGCTGTATG 298058 28 100.0 32 ............................ TGATTGGCTGGGCGCCGGGTAAGCGCATAACA 297998 28 100.0 32 ............................ GCTGCGGATGAATTGCTTGATCGCCTCGCCAG 297938 28 100.0 32 ............................ TACAAGTATTGGCCCAAAAGCGACCGACTGGA 297878 28 100.0 32 ............................ GATAGCCGCGATGTTGACCACCGCATCCACCA 297818 28 100.0 32 ............................ AACACCAAGTCCGGCGCTGCCTGCGGGTTGCC 297758 28 100.0 32 ............................ GGTCAAAGAGGAATTGGCGCAGCTTGCAGAAC 297698 28 100.0 32 ............................ AGATATGCGGATGTGGCAGAGCATGCAGCCCT 297638 28 100.0 32 ............................ AGGCAGTGACCGTGAAGTGACCTCTGAACAGA 297578 28 100.0 32 ............................ AACCAGGGCGTGCGTCTTGATCAGCTCTTCGC 297518 28 100.0 32 ............................ ATCACATCCGAGCGGCGGTAGCTGCTGCTGAT 297458 28 100.0 32 ............................ TTCAATGCAGCGGTGTCGCAGGCGCAGACGCT 297398 28 100.0 32 ............................ ACGATGATCGACGTGCACAGCGGCGACGGCTT 297338 28 100.0 32 ............................ AGCAGCGCCAGCGCATCGGTGGTCATGCGCGT 297278 28 100.0 32 ............................ TTCGGCAAAGACGATTGCCGGGTCACCGCTCA 297218 28 100.0 32 ............................ GTTTAGGAACTCGCGCACCGCTCAACCGCCGC 297158 28 100.0 32 ............................ AATAAAAAGCCGCACGGCCCTTGCGAGCGGTG 297098 28 100.0 32 ............................ AGAATCCGGAGACGGGCGAGACGTTCGGCGAC 297038 28 100.0 32 ............................ ACCCGCTCCCAGCCGGCAGCGCCTGCTGCTGC 296978 28 100.0 32 ............................ GTACAGCGTGTTGGCGATAGCGCGCTGGTCAG 296918 28 100.0 32 ............................ GCAACATCGCATCGGTGTACCGCTGCAATCCA 296858 28 100.0 32 ............................ GTCCGGCATCATGTCCCCCGAAGCGGTGAAAG 296798 28 100.0 32 ............................ CTACAGGCGCCGCCGGCCCCGGAGATCCACAC 296738 28 100.0 33 ............................ AATCTGTCCACCAGCAGCATGTGTGACATTGGT 296677 28 100.0 32 ............................ TGTGAGGGAATTTTTGGGTACCCCACTCCCGA 296617 28 100.0 32 ............................ TAGCGTAGTGCCGAATAGCGCAATGGGAAAAC 296557 28 100.0 32 ............................ TGCACCTGTCGCGCCGTGACGGCGCTATGTTG 296497 28 100.0 32 ............................ GGCTCCACCCCCACCGGCTGGCGGGCGGCGAG 296437 28 100.0 32 ............................ GACACCGAAATCATTGACCGCCTCGGCGGCAC 296377 28 100.0 33 ............................ CTCTCGGGAACTGCTACCCAGCAGTCCATCGAA 296316 28 100.0 32 ............................ AACCATCGGCCAATGCGATCTTGCATGCTGCG 296256 28 100.0 32 ............................ TACACCACGCAGCAATGCCCGATGCCGCACCC 296196 28 100.0 32 ............................ TGCTGCGTCATGCCGGCTGCGAGGAGCTTGGT 296136 28 100.0 33 ............................ CTGATCCCACGTCGCAACGCCCGCCGGTGGCGA 296075 28 100.0 32 ............................ GCGACGGATGGTCGCTTCATGCGTGCTGGCGA 296015 28 100.0 32 ............................ TATCCAAATTACCGTCGCGAACGTATGCTGCC 295955 28 100.0 32 ............................ TGGCAGACGGTGTGCGCGGGCCTTACAAGCAG 295895 28 100.0 32 ............................ ATTGAGAATCGCCAGCTCGGATTCAATCTTCC 295835 28 100.0 32 ............................ TGGACAAGTCGCAGTTGCCCCTGGCCTGGAAC 295775 28 100.0 32 ............................ CAGTGGCAGGAAGCCAACACCGAATGCGGTGT 295715 28 100.0 32 ............................ GCATCCGATCGGCAGCGGAGCGTTCTGTCGTG 295655 28 100.0 32 ............................ TGCCCAGCGGCGTAATAGGTGATGCCACGGAA 295595 28 100.0 32 ............................ ATGCTCAGCGGTCTTCCGATGCCATGATGGTC 295535 28 100.0 32 ............................ ACGTCAAGACCTGCATCAATGGCGAACACATC 295475 28 100.0 32 ............................ ATGGCGCTGAAACGTAAGACACCCGATACCAT 295415 28 100.0 32 ............................ TGGTCGGACAGCAGAAGCGTTCCTGCGAGCAC 295355 28 100.0 32 ............................ ACCGGTCGGCGCTGTTTGGACCGCACCAACCT 295295 28 100.0 32 ............................ ACGGCGCACCGCCTTCGCCAGCTCGCGCAGGT 295235 28 100.0 32 ............................ GCCGCGCTTAGCGCGACGCGGACCGCGACCCC 295175 28 100.0 32 ............................ ACCGTCACCCGCACCACGTTGGCGGTTTCGCG 295115 28 100.0 32 ............................ ACTGAAGCCCAGCAGGCTGACGTTGGAAGACA 295055 28 100.0 32 ............................ ATCACTCGACGGTCGCCATCGGCCAACGGCAT 294995 28 100.0 32 ............................ CAGTCGTACAGCGCTGCGCCCCAGTTCGTGGC 294935 28 100.0 32 ............................ TATTGACGGCGATGCCTACGTGGCTGCACTGG 294875 28 100.0 32 ............................ TGGCGGTCATGTCCGACTGAAACCCGCAGTAT 294815 28 100.0 32 ............................ ACCCTGGACCGCGCCAACCTGGACGGCGCCAA 294755 28 100.0 32 ............................ AGGCTATTCCACGCCGCGTGCGCCGCGTGCAG 294695 28 100.0 32 ............................ GTCACTCTGCTTAAGGTTTTCTCGCAGTGCTG 294635 28 100.0 32 ............................ CGGCTGCAGGCCCTGGCCGGCGCCCAGGTTGA 294575 28 100.0 32 ............................ AAGGGCTTGGCCGATCTGGTGATGGATGTGGC 294515 28 100.0 32 ............................ TGGAGCCGGAGACGCGCGAGCGCTACGCATTC 294455 28 100.0 32 ............................ AGGTCAGAAATCGGGATGCAGGGCTATGGAAA 294395 28 100.0 32 ............................ GTTGAGCGTCAGCATGCGGTTGACGTCGTGCC 294335 28 100.0 32 ............................ TTGACGCCGCACGCCGACTGCGACGCAGGTTG 294275 28 100.0 32 ............................ ACTACCGCTCGCACGGCTTCGACTACATGGGC 294215 28 100.0 32 ............................ GTCGCCGGTGACTTCGTTGCAAGCGTGCTTCA 294155 28 100.0 32 ............................ AACCTGTCCGGCGCCAGCCTGTACCGCGCCAG 294095 28 100.0 32 ............................ TGGACGGCGCCAGCCTGTCCGGCGCCAACCTG 294035 28 100.0 32 ............................ AGCCTGGCAGCGGCGCCAGCCTGCCGGCGTTG 293975 28 100.0 32 ............................ TGGACAAGTTGGATGTACTTCCCGACGACCAG 293915 28 100.0 32 ............................ TGGTCGTCGTGCACGCCCTTGGTGGGGAAGCT 293855 28 100.0 32 ............................ ATAGCGCGCGATGCCGGGGCGATACTCGACCG 293795 28 100.0 32 ............................ TACCGACTCCCTGCAGCTGTTCAACGCCTGGC 293735 28 100.0 32 ............................ ACTTCGGTCTGCTGGATGCCATAGCGCGCGAT 293675 28 100.0 32 ............................ TGTCCCGGATCAGCAGGGTTCGCTTCGTGTGG 293615 28 100.0 32 ............................ CATGACCTGAAAGCCGGCCTTGCTCAACGTCT 293555 28 100.0 32 ............................ AGCAGGTCGCGCAAATCGCCCTGACAGTTGAA 293495 28 100.0 32 ............................ TGCTCGCGAATGGCGCCCTGGTCGAAGTAGTA 293435 28 100.0 32 ............................ TGCAGGCTGGTTACCCTGCCCCATCCGGTGCC 293375 28 92.9 32 .................AC......... CAGTTGACGCATTGGTCGCCATGCCCCAAGTC 293315 28 100.0 32 ............................ GCACTGGCCGTTGGCGAACAGCCAACCGCCCA 293255 28 100.0 32 ............................ AGAGGCAAAGTACCAACAAAGTTCTCTATTTC 293195 28 100.0 32 ............................ AGGTGGCCGAAGCCCTACATCAGCGACGGCCT 293135 28 92.9 32 .....G...T.................. GTCCGGCATCATGTCCCCTGAAGCGGTGAAGG 293075 28 100.0 34 ............................ ACCGGCACAGCAGCAGGTGCGGGTGGGGCGAACT 293013 28 89.3 32 ............A....T....T..... ACGAACTGGCGAGGATCGACCGAGGCATAATC 292953 28 92.9 28 ..........T...............G. ATCGCTCCGCACGGGTAACCACATGCAT 292897 28 75.0 0 CGCA........A.......T..T.... | G [292889] ========== ====== ====== ====== ============================ ================================== ================== 102 28 99.4 32 GTTCACTGCCGCGTAGGCAGCTCAGAAA # Left flank : GCGTTGCAGGCATTGATGGCAAGCGGGTGGCTGCAAGGCATGCACGATCACCTGACCGCATCGGACATCCTTTCGGCGCCTGCCGGCGCCCAGCACCGGCAGGTCACGCGGGTGCAGGCCAAGAGCAGCCCGTCACGCCTGCGTCGTCGGGCCATACGCCGCCATGGGATCGACGCCGACACAGCCACCCAGCGCATCCCGGACACAGCAGCCGAACATTTGCAGCTGCCGTTCGTGGTCCTGGGTAGCCGCAGCACTGGACAAGCCTCCTTCCCATTGTTCATCCGCCACGGGGCCCTGTTGTCCGAACCAAGAGCCGGCAGCTTCAACAGCTATGGCCTGAGCCAGGAAGCCACCGTCCCCTGGTTCTGACCCTTTTTCCCAAGCAGGAAAGGGCCGCTTTGAAATCAATCACTTGGCAGGCACCCTGTGCAAAGGGTGCCTGCCTTTATTTCTTGGCTTTTCTTTAGATATCAATGGATTGGATGAATTCTGATCTT # Right flank : AAGCAAAGTCCTGCCGCTCGGCGCCTCTGAAAAATTCACTGTCGTATGGACAGGAAAAATGGCGGCCATCCTCGGCCACTTGTGATCGATCTATGCATTACTGGACCACTCACTGCTGTGGAGGCTGTCCAGATAGAAGCCGCGCCTCCACCTACTGCTATCGCCAACGCCTGCCATCGACGCCTGCATCGCATCGTCGCGTGGCGGGCTTATCTGCGGATTCAGCTGCGCCGAGCGCATTCAACGCAGCCTGGCGCCGCGAACGCGGCCGATTGAAGCGTCATGGATTACAGGCGCTGCCACTCCAGCCCTTCGCCTCGCCGGTAATACACCGCCACCGCCTTGCCGTAGACCGCAGGTGCATCGACCAGTCCGAAATAGCGCCCATCCAGGCTGTTGCCGCGATGATCGCCCAGCATCAGCAGCTTGCCGGGCGGTACTGTCAGCCCGGCGATGTTCGGGCCGCCGCCATTGCCGAGATTCAATGGCGCCAGATGCGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [17-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //