Array 1 2559122-2560607 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072046.1 Akkermansia muciniphila strain Akk0500b chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 2559122 36 100.0 30 .................................... CTGGTACTTGCTCATTGCCTCATGGTATTC 2559188 36 100.0 30 .................................... TAAACGATGCGGTTATATCGTTGAAGATTA 2559254 36 100.0 30 .................................... CAAAAGACGCATAGGAATACGGCAAGTAAA 2559320 36 100.0 30 .................................... CAAAAGACGCATAGGAATACGGCAAGTAAA 2559386 36 100.0 29 .................................... GCGTTAGCCACCGGCCATCCGTCGGCGCA 2559451 36 100.0 30 .................................... ACTGGACAACCGCTGATGTTTGGATAGGCA 2559517 36 100.0 30 .................................... TGAAATTGTCGTCAATGTCATCCCCTACGT 2559583 36 100.0 30 .................................... GCGTTAATTTACGGTAAGCGTACTAATTGG 2559649 36 100.0 30 .................................... TCGTGCCGTGCCGATAGCTGGAATAAATAG 2559715 36 100.0 30 .................................... TCTGGGTATTGCCCTGTTCGTTATAGACCA 2559781 36 100.0 30 .................................... CGTCGGAAATGGTCTCCGCAAACAGGACGA 2559847 36 100.0 30 .................................... GCAGGGACTGGCCGCGTGTCGATTGCACCG 2559913 36 100.0 30 .................................... CGGCGGAAAAGCTCGCAATCATCCGCAAGG 2559979 36 100.0 30 .................................... GTGCCAAGCGGACGGGAGGACTATGCCGAG 2560045 36 100.0 30 .................................... CAATCATGGAAGAAGAGCGCATGGGCTATA 2560111 36 100.0 30 .................................... AAATATTCATCACCTTCTATCAGTCCCATG 2560177 36 100.0 30 .................................... GTATAGAGGTCTACAAGCTTATCAGTAGAT 2560243 36 100.0 29 .................................... AATTAAGAAAGACCGCCTCGCAATCGTCC 2560308 36 100.0 30 .................................... AGGGCTTCAACTGCTTCAAGGTAATTCACA 2560374 36 100.0 30 .................................... ACGATTCACAGGCCCCTGAATCATGGGACT 2560440 36 100.0 30 .................................... AAGGGGCGAAACGGTTTGCCTACGTAGAAG 2560506 36 100.0 30 .................................... TGCGGGCAGTCCTGCGCCGTAGATGACGGA 2560572 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 23 36 100.0 30 GTTTTGCCTTGAATCCAAAATAAGGCACAGTACAAT # Left flank : CTGACGTGGAAGCATATCAATCTGAAATCCGGCCTGGTTTCACTGGCGCCCACCCATACCAAAACGGGAGGGAGCCGCCATGTTTCCATCCTTCCCGTGCTGGGTTCCATCCTCAGCCGGATGTCTTCCGCCGGTTCCCCCGCCCGTTCCGTCTGCCCGCCCAACTGGGAAAAGAAATGGAGGGAAGTAAGGCGCCGGTCCGGCATCCTGAAAAAAAGCGGATGGGTTCAGGACGTGCTGAGACATACCTACGCCTCCTACCACCTGGCCCATTTCTGCAATCAAAACCTTCTCCAGAAGGAGATGGGACACTCCTCCCCCTCCCTGCTGCTGGCCCGCTATCTTAATATGGAGGGCATCACCTCCGCAACCGGCGCCATGTTCTGGACGCACAGCTTTGTTTCTCCCGTTCCGTTAAAGAAAGACTGACAAAAATCCGTCTGGAATTGCGCGGCCAAAGGCGGAGCAATCCCCTGCTCCATCAGACCGGAGGCGCATTT # Right flank : TAGATACTGTGCCTTATTTTTATGTTCAGCGACTTATAAAAAAATACGGCATCCGATATTTTTACCAGAGGAGCATCTGCTGAGGCAGGGAAACCTCCTGTCGGGGACAAGACCTGCCATGAAAAACGAACATCTTATCCCACTGGATATTCGTAACGAAAAGACAGCGGACAGAACCATCAGGCGGTATCATTTTCTGGATTCTGCGGGAGTGGGTAGCCATTCTTTCCTGAGTAACGCACGCGCGGGCATAGACGCTATACTGAATCATCGTATAGCCGTCTTCTAAAAGAGCCTTACGGAAATATTGATAGTTTTTTTTATCTTCCGGCGTGGTTGTGGGAAGATCAAAGAACACAACTAGCCAGCCCATTTTATAGTTGTCATAAGCCATGGTTCATACGGTCCGGATTGTCCGGCAAGAACTGCTTTGCGGAAACTGCGGCAAACGGCCTCTACCGCCGCTTTCAACGGCAGCTGTTTATCCCGGTACATGACAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGCCTTGAATCCAAAATAAGGCACAGTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.50,-4.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 2 2635604-2635039 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072046.1 Akkermansia muciniphila strain Akk0500b chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 2635603 31 87.9 34 .........T-..C.-................. ATGTTGTCCACGATGTAGGTAAAGCCCTTGTACG 2635538 31 87.9 35 .........T-..C.-................. TTTGAAAATTGACGCGCCCTTGCTGTTTTTTTACA 2635472 33 100.0 33 ................................. ATGTAAAGGTCGACATGTCATGACACAGAAAAA 2635406 33 100.0 34 ................................. TTCCTACGGAGAATACGGAAGGGACAATGCCGAT 2635339 33 100.0 34 ................................. CGGTTGTCCGGGGTGCCGAAGGAGATACCACCTA 2635272 33 100.0 34 ................................. ACTTTGGATTTTCAAGGCATGAATCAGGTTCCCG 2635205 33 100.0 34 ................................. CGGTTGTCCGGGGTGCCGAAGGAGATACCACCTA 2635138 33 100.0 32 ................................. CAGGACGCGCGGGGAATTTTCCCCACGTTGGC 2635073 33 100.0 0 ................................. | GC [2635050] ========== ====== ====== ====== ================================= =================================== ================== 9 33 97.3 34 GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Left flank : GCCGTAAAAATTCCGTTGATGGCCTGTCTAGCCTCCGTTGTCTCCGCGGCGTTGGTATGGCTGTTGAGCCTGAACAGGTGGACGCGTAAAAGCATCATGTAAACCGCAGATATTTTTCGCAGGTCGCTTCGGGGACACGGCAGTACCGGGATGTCTCTTCTTTTGTGGAAAAGAGAATGAAACGGTTTCCGGGGAGAGGCCTGCAAAATTCTGGACGGGAAAGAGGGAACAGGCTAGGATGTCCCAGCATCGTGTACAGGCCTAGGTTGCCGGAGATGCGGGCTTTTTAACGCATGAAAAGCTCCTTTCCCGGTCTCCCTTCCGCCGACCCCAAGCTCACAGAAAATTCCCGGGACACCGGCGATTTTCGTAATCCGTTGGGGTTCTAATCTTGACAACTATCATCTCTTTTTCACGGCCTGGAATCTTTGTACCTCCCATGGGAGGTTGGCGCAAAACACCCGTTGCACTGTTGATAATCAAACCATAGACGTTCAGGA # Right flank : GGAAGCCTCAGTACATCACACATCGCCGCCTGTAGTCGCACTCCTTGCAGAGTGCATGAAGAGGACGACGAGGCGGTGGGCTGGGGCGGCCTGTTGTCCTCTTGCAAGGGGATGGCAACAATGTTGCAGACATAGCACAGGAGAGGTGGTCAAGGGCGTTTTTCCACAATGCTTGATAATTTTTCTACAAAGTGTTGCTACGTTTCAACTCCTTAAAGAACCCAATTTTCAAAAAATTCCAGGATTTTTGAGGCTGGAAGGCTTGTCAGTTAATTCCTCTATTTATTTTTCAGAAAGGGGGTGCTGATGCAGGTTGAGCTCCGCAGGAGGAATGGCCTGGAGCAGAGCCAGGATGGGGTCCTGCGGTGCGGCGCCTATTTCCCGCTGGCGTTTGAATTCCTCCTCTTCCTGCTGAAGGGCCGCCAGTTTGGTGTCTTCCACCAGCGCCTTGAATTTGTCTGCCTGAGAGTATTCTCCGTCCTCGTCCCGGAAAACGCGGG # Questionable array : NO Score: 9.12 # Score Detail : 1:0, 2:3, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.90,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.15 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //