Array 1 361-27 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHWYZ010000023.1 Salmonella enterica strain FUA1903 NODE_23_length_51488_cov_25.767289, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 360 29 100.0 32 ............................. GTTGCACGCATTCCAGTGTGGTTTAAAAAACA 299 29 100.0 32 ............................. AACAACCCGCTAGTATTACAACGACTAAAAGT 238 29 100.0 32 ............................. CGGGCGTACACCAGAACGGCTATTCAGGCACG 177 29 100.0 32 ............................. GCGCAGTATCAGGGAACGGCCGTTATTACGGT 116 29 100.0 32 ............................. GAGCGTTTAAAAATGCTCGATACGCTCCAGCA 55 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCTATTATGTTGGTGGAATGTAGTGCTGGTAAAAAGTAGTTTATAAACAATTATATACGTTTAGT # Right flank : GATTCTTGACTGGCTCGATACGCTCGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [20.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 110183-108140 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHWYZ010000009.1 Salmonella enterica strain FUA1903 NODE_9_length_127128_cov_25.077058, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 110182 29 100.0 32 ............................. CCCTCTTTCGCCGCTACCGCAGCTAACAAGAT 110121 29 100.0 32 ............................. ATTTTCATCGCCAGACCAGGATCGGTGGGGTT 110060 29 100.0 32 ............................. AAAAATTCGGCGCCAGCATCGCTGCGGATACT 109999 29 100.0 32 ............................. GCTGGCGGTGTACTCATCGCTTTGCACGGTTC 109938 29 100.0 32 ............................. GAACGCACGTCGCACAATACGACGGTTAAAAA 109877 29 100.0 32 ............................. CGCGCCACGGGTAAGACCTGGGAAGAGACGAT 109816 29 100.0 32 ............................. CTCAAGTAAACGTTAGCACCACGAATATAACC 109755 29 100.0 32 ............................. GGCATTGCGTGGTATCGGGTTTGCTAATATTT 109694 29 100.0 32 ............................. GCGCCCGTCGGGGGAAGCAAGGCGGACGGGAC 109633 29 100.0 32 ............................. TAGTCCATAGCCTCAGCCCGGCTTGTCATCCT 109572 29 100.0 32 ............................. ATTACGAGACATTGTGGAAATCCATCTACGGC 109511 29 100.0 32 ............................. AGGCGTGCATCAATTGCTATAAAGCCGTAGTC 109450 29 100.0 32 ............................. ACTGGTTGAGAAGATCCGCCGCAGAATCAGCG 109389 29 100.0 32 ............................. ATCACATCACGCAGATATTATCTCATTACAGC 109328 29 100.0 32 ............................. CGCCTACGCCTGGGAGCTAATCCCCGACAGCA 109267 29 100.0 32 ............................. CCCGTTCCACGGCGAGAAAACCCCGTCCTGCG 109206 29 100.0 32 ............................. CCGTTGACGGCGAGCGCAGACCTCGGAAATAA 109145 29 96.6 32 ............................T TGCCATAGAAGAATCTGACCCTGATAACTGGC 109084 29 100.0 32 ............................. GCGTCCTCGCCAGCGTCAGCCGGGTAATACAA 109023 29 100.0 32 ............................. GCCTGCGTGAAAAACAGGTTCATCAGGATGCC 108962 29 100.0 32 ............................. CTCCTTGAGCAGGGGAAACCCTGCCTTTTCCA 108901 29 100.0 32 ............................. GGCTGAGAAGATCGGCGGGCAAACTGCCTATG 108840 29 100.0 32 ............................. TTTATTCGCCGAAAGAGGGCGACATAGTTATT 108779 29 100.0 32 ............................. AGCCAGGCGTTATCTTCTGGCGTTCTTAGCGG 108718 29 100.0 32 ............................. GTGACAACGGTCCCGGCGCTGGAAAAGGTGAA 108657 29 100.0 32 ............................. CCAGATAGAGGCTTTAACATGAAATCAATTAC 108596 29 100.0 32 ............................. GGGGAGGGTGAATTTAACGAGCTGTATAAAGC 108535 29 100.0 32 ............................. CAAAAATGATTACTATAATCCCATGTTGAACA 108474 29 100.0 32 ............................. CTTCATCTCGCAGTACGTAAACGCCTGCATCA 108413 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 108352 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 108291 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 108230 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 108169 29 96.6 0 A............................ | A [108142] ========== ====== ====== ====== ============================= ================================ ================== 34 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCTTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGTGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 127090-126451 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHWYZ010000009.1 Salmonella enterica strain FUA1903 NODE_9_length_127128_cov_25.077058, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 127089 29 100.0 32 ............................. ATTCTTGACTGGCTCGATACGCTCGCATCCAT 127028 29 96.6 32 ................A............ TCACAGTTGAGTTTTGCCGAATTTTTCAACAC 126967 29 100.0 32 ............................. GCCGGACTCAACGGCGAGAACGTCGGGGACTT 126906 29 100.0 32 ............................. CAGACTGTGGATCTCAATCGGCCCGGGCAACT 126845 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 126784 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 126723 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 126662 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 126601 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 126539 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 126478 28 89.7 0 ............T...........G-... | ========== ====== ====== ====== ============================= ================================= ================== 11 29 98.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TAAACCGATTCTTGACTGGCTCGATACGCTCGCATCCA # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //