Array 1 21769-22728 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYGO01000003.1 Streptococcus oralis subsp. oralis strain OP51 TZ89_contig000003, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 21769 36 100.0 30 .................................... ACGACATTCAAATAGTTGCTCATTTCTATA 21835 36 100.0 30 .................................... GTGTGTTTACGTCCGATTAGTTTACTTTCT 21901 36 100.0 30 .................................... AAGGTTTATGAATTTATAAAGAATAATCCA 21967 36 100.0 30 .................................... ACTAAAAGGCTTGCATTGCCACTTTGTTAT 22033 36 100.0 30 .................................... CAGAATCAATCTTCTTCAAGGCTTCACGCT 22099 36 100.0 30 .................................... AGATGATCTTTGATTCTGGTGAGGACTTTG 22165 36 100.0 30 .................................... ATTGATGATTTACAATTAGCAATCGATGGT 22231 36 100.0 30 .................................... TTCAAGTCAAGCAAGTGACAGGTGATAGGA 22297 36 100.0 30 .................................... GGACGAGGAGGAGGACAAAGAGAGAGCAAA 22363 36 100.0 30 .................................... ATAAGTTATTTCTTCAACTCGAAAAAGGCG 22429 36 100.0 30 .................................... AACGGTCATCAAATCGGAATCAGTCGGGCG 22495 36 100.0 30 .................................... TTTTGTTGACGTATGTCAACACAAAACACA 22561 36 100.0 30 .................................... TTTACCTCACTTTTTTGCTAAAATGGGTAT 22627 36 100.0 30 .................................... AAATGGACGTTCAAACCAACCCACACCTCG 22693 36 97.2 0 ...................................A | ========== ====== ====== ====== ==================================== ============================== ================== 15 36 99.8 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : ATCAGCTTAATGACAAGCCAGAAGTCAAATCCATGATTGAAAAACTGGTAGCTACGATTACAGAATTGTTAGCATTTGAGTGCTTAGAAAATGAACTAGACCTAGAGTACGACGAAATCACCATTCTAGAGTTGATCGATGCTCTAGGAGTCAAAGTTGAAACTCTGAGTGATACACCTTTCGAAAAGATGCTAGAAATTGTCCAAGTTTTTAAATATCTTTCCAAAAAGAAACTCCTTGTCTTCATCAATGCGACCGCCTATCTATCAAAGGATGAGTTAGTAAATCTGATAGAGTATATCCAACTCAATCAACTAAAGGTTTTATTTATCGAACCTCGAAAAGTCTATGATTTTCCTCAATATGTGCTGGATCAAGACTATTTCTTGAACCCTGAAAATATGGTATAATAAGGGTAACAATTGGAACCTGACGAGCTGAAGTCTGGCTGGGACGAATGGCGCGATTACGAAATTTCGTGAGAAAAATTTTTCTACGAG # Right flank : AAGCTACTCATTCTTTGAGTAGCTTTTTAGCTATTCCCTTACACATAGGTCATTCCCTTATAGCAAAGGAAAACGGCTAGTGCGATAAAAAGTACGGTTGCCCCGATTCGCTGGCTGGTACTATACATCTTTCTCTCCCATTTAACTGGGAAAACAACTGCTAGAGAAGCACCGCCTACTGCACCTCCGATATGCCCAGCTAGGCTGATTCCTGGAATCAGAACACTTCCAATGATATTGATCACGAAAAGTGTCAGATAGGATTGCCCCAACTGCTGGATATAGGGGTTGCGAGTTGCGTAACGCAAGACGATAATCGCAGCAAATAGCCCGTATAGGGAAGTGGATGCCCCAGCAGCGACAACTTTCGGTGTGAAAGCAAAAACAAAGAGATTGCCCATCATTCCAGATAATAGATAGAGAAAGAAGAACTGCTTAGAACCGAAAATCTCCTCCACCTGTCGTCCAAGAAAGTAGAGCGAAATCATATTGACAATGAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 1027390-1027159 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYGO01000002.1 Streptococcus oralis subsp. oralis strain OP51 TZ89_contig000002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 1027389 36 94.4 29 ..............C.G................... CAGCGTGCCGAGAAAGAGAAATTTAACCA 1027324 36 100.0 29 .................................... TGATGATAGACTTAGCTGAAATCAAGAAA 1027259 36 100.0 29 .................................... CTACTCTTGACAACTTCGACACACCGACT 1027194 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================= ================== 4 36 98.6 29 GGTTTTATCGGTCATAATTTTGGAGACTACAAAAAC # Left flank : CACCTTAACGAACACATCAAACAACATAAAAAAGACCACGCTACTTACCGTGGATTGATGAAGAAAATCGGTCGCCGTCGTAACTTGCTTGCATACTTGCGTAAAAACGACGTTAACCGTTACCGTGAGTTGATCAACTCTCTTGGACTTCGTCGTTAATCTGCTTTATTTTCTACTTACATTGCGTTGTCACCTTACCTCGATATACTCAAGTATAATCTTCGGTTACGGTTCCTAGCACTGTAAGGTAAAATAAACCAGATCATCTCCCTTCGGGGAGATTTTTTGTTTCACTAAAATTTTTATACAATCTTCGCCTCGTCGCCTAGTCTATAAACGTTTTATCCAGCAAGAATTATGATGCTAAGAGCTCCAAAAATCCGTATGAAAATAGGGAAAGGAAACAGTGTTCGATGAACACAAGGAGTTTCATCTTTTTCACTAGGATTTTAGCCCGAGCTCAAATCAGCTCTCTGATATTCAGAGAGCTTTTTTATTGA # Right flank : CTCAAATGGTATCAGCTAATGACACCATGAAGGTGCGCAGTTACTCGGCTTTTCAAGCCGAGTAACTGTCTGCAAGCCCCCTCGGAGAGCCCACACTTTACGAAGTAAAGTATAGTATGTTATACTTTACATGGAAGTAGTCACCGAATTTCAGTTAGAAATTACTTTGTAACTACGTTTTGAGGAGGAGTAAAATGCTTTCCTACGTTCGACATTACCCACTAGCGATAGCTAAATTAATGTGTCTGTGCTCTCCTAAAATCTGCTGATTTATTACTAACTAATACAGGAGGTTTTTATGGGACAGACAATCATATCTGCTATTGGTGTTTATATTTCCACCAGTATCGATTATTTAATTATTTTAATTATTTTATTTGCACAGCTATCACAGAATAAACAGAAATGGCATATTTATGCGGGGCAATATCTAGGAACAGGCTTACTTGTAGGGGCGAGTTTAGTTGCTGCTTATGTCGTTAATTTCGTGCCTGAAGAAT # Questionable array : NO Score: 2.79 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTTTATCGGTCATAATTTTGGAGACTACAAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.10,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA //