Array 1 112115-112451 **** Predicted by CRISPRDetect 2.4 *** >NC_014221.1 Truepera radiovictrix DSM 17093, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 112115 36 100.0 38 .................................... TTATGAGGCGTTCCAAAGCCCTTTTCACCTCCTGGCTG 112189 36 100.0 42 .................................... ACGGAAACAGGGCCGACCCGTCTCCCCTTCAGAATAAGTATA 112267 36 100.0 39 .................................... CGGCACCACCACCCAGTGGGTCTCGTCGGCGTACCAGAT 112342 36 100.0 38 .................................... CCTCTGACGGAGAGCCGTAGAGCCTCCCCGTCATTTTT 112416 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================== ================== 5 36 100.0 40 GTTGCAAAAGGGTCTGCCCCGTCAGGGGATTGAAAC # Left flank : ATCGGCGCAAACGACGTGGTCAACCCCGCCGCCCGTGAAAACCCCGGCAGCCCCCTCTACGGGATGCCGATTATCGACGTTGACAGAGCGCGCACGGTGTTCGTGCTCAAACGCTCCCTGGCGTCGGGCTTCTCGGGGGTCGAGAACCCACTGTTTTTCAAGGAGAACGCCCGGATGCTCTTTGGCGACGCCAAGGGGACGGTGTCGCAGCTCGTCGCGGCGTTTAAGGAGGCGTTGCGGGACGCGGCTTAAGCGTCCACCACCTCGAGCGCCTGGTATACTACGGTCGTCACTACCCGTGGCGAGAACCTTGACAACCCCCTATAGGTCGTCTCCGATCGGCTCAGTATGTCTCAGAGTTAGTCATTTGTCTTTAGCGGTTATCCACAGCCAACGTCTAGTCCTTTTGGGGTTATCCACAGGCCAAGCTGTGGATAACTTAGGGGGTGTCAAATGACCCCTCAAAAACCCCTTGCCAGACGGCCCTCCCAGAGGGTAGA # Right flank : CTAGTGGTGCACTAGCTGCGCCTCGAAGAGGTCGAGCGGCACGTTTTGAACTGGCCTGGGGGTTGGTAGAGGATTGCTCCAGTTGCCTAAAGCGCGGTGAGCCTAACTGAGGCTGTCCCGTAGGTGCAAATATGGTGCAAACGCACTCCAAAAAAAGCGCCCGCCATCTCCGGCGGGTTTTACTTTTACCGTCCCTGACAGGTTTTGTTTTGGTGGGCCCTGTTGGACTTGAACCAACGACCAATCGATTATGAGTCGACTGCTCTGACCGACTGAGCTAAGGGCCCGCGTCTAAGAGAGCTGGCCCCAGCATACCACGCTCGAGGCTGTGCGGCCCGCGGGTTCGGTGCGCTGGAGCGGCGCGTTCTCAAAAAACTCTAGCGCTCCCCGGCTAGACTGGGGAGCGTGTCTCGTCGGCAGCGCGTGCTTTCGCTCCTTCTGCTCATCGGGTGCGCCCTGTGGCTCGCCCTCGAGCTGCGCGTGGGGGCGGCGCGGGCGCT # Questionable array : NO Score: 9.06 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAAAGGGTCTGCCCCGTCAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.90,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [41.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : NA // Array 2 347049-348383 **** Predicted by CRISPRDetect 2.4 *** >NC_014221.1 Truepera radiovictrix DSM 17093, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 347049 37 100.0 35 ..................................... CTGAGGGCTCGGCTGAAGAGCATGTTGCGGGGGTA 347121 37 100.0 34 ..................................... CGGACGGACGTGCTTAGCCGCTACAGCGGCGAGC 347192 37 100.0 35 ..................................... CGAGTCCCTCCATCTCGGAAGTTGAAAGGAGACGA 347264 37 100.0 35 ..................................... TGGGAGCCGCACACGATGCTCCTCCTCTGGGCGGA 347336 37 100.0 36 ..................................... GGGCGTCGGTTCAGGGATACTGCACGTCGCCAGCAG 347409 37 100.0 36 ..................................... ATGCGGTCCATGCTCGAGCAGGCGGACTTTTCGCGG 347482 37 100.0 35 ..................................... TAGACGACCGGGTGCCAGAGCGGGTTTTCGCTCTG 347554 37 100.0 36 ..................................... ACGAACTCCGCCGGGGACATCGCCAAAATAAGGCAG 347627 37 100.0 36 ..................................... CGCCTCCGAAGACCGGACGAGCCCACGTATAGCCTC 347700 37 100.0 36 ..................................... TCGGCGTCAGCGTCGATGCTCTCGGCGAGCGCCATG 347773 37 100.0 36 ..................................... TTCGTCAAGCGGATAGGCCACGCACCGCTCAAATAG 347846 37 100.0 35 ..................................... TGGATGCTATGCAGCGACAGGAGAGAGCAGCATGA 347918 37 100.0 35 ..................................... GCGGACGGTGCCGACACGGTTATCGGGAATGCTGA 347990 37 100.0 34 ..................................... AAGGGTCAGGGAGTACAGCCAGGAGCGTCTAGGA 348061 37 100.0 35 ..................................... CTCTGTCCTAATATACCCCTCGCGCGCCCACTCGG 348133 37 100.0 33 ..................................... TCCACGCTCGCGCCGGGGGAGACGTCCCCGGCG 348203 37 100.0 35 ..................................... TTGTTAATGCCCCTGCTTCACTCTCGGTAGCACAA 348275 37 100.0 35 ..................................... ACAACCTAGCCCGAGAGCCGCGCGGTCAAGCCCGC 348347 37 97.3 0 ....................................T | ========== ====== ====== ====== ===================================== ==================================== ================== 19 37 99.9 35 GTTGCAGCCGCCCTTCGGGGCGGCTGAGGATTGAAAC # Left flank : GTCGACGGGGGCGGCGGCGCGCAAGGGGCTCACAGCGCGCCTCGAGCGCTGCCACGAGGTCACGATGTCTCGGGGCGCTTCCGGTTGAACCTGGTCGTGGATATAAGAAGCCCAAGCGCGCTCGAGGCGTCGCCTCAAGGTTGCGAGTTCTGCTTCGTCCACGCGACCTGTTACCCTCCCTCGCCCCCCGTCGCAGTGTTTACCAGCTGCGCTACTATGACGTGTTCCAGAATTATAGCCGCTTTCAGCTCTCGGTGGAGGTCGTCGGGGTGGTGTATTTGTATGCACGCTGGTCGTGAGCGCCATAAAAGCTGTTAAACTTGCGCGAACCCCAAGCGAGTGCCCAACCCCTGGGGGGTTCGCGCAAGCCGCTTTTTGCGTGAGCGGCGAGAACTTTGATAACTAAGAAGCCGTGCCAAAGGCTGCGCGAAGCGCGTTGCGGACAGGTTCGCGCAAAGCGGTGCTGGAGAAACGTCTCTGACGCGTGCTATGCTGCGACC # Right flank : TGCGGGTGTGACGGGCGATGTCCTTCTCCCGTTTGGCGATGCGGTGCCGGTCGGGCTGCGGGCGTTGCTGCTCCGCCGCTATCCTCTTGAGGTGTTCGTCAACGACCCGAATTTCGCCCTCGATACGTGCGCAAACCCTCTTGTTTTGACCCACACTGTACCTTGTCCGTTGCCCCTCATCGGTCGTGGGCCCTGAAGCGCCGGAGGTCTGTGAAGGCTGCTGCGGCACGCTAAACTAGAGGCGTGAGAGGAGCCGTCAGCGCGGACGAGCTTAGGGCGCGGTTGCGTCGGCCGCTCCTGCGGGAGCTGCAGGGTGGTTGTCGGGATCAGGCGGTCGTGGGCGGTCTGGAGAAGCTGCTCGAGACCGTCGGTCAGCCCTTTGCCGACGTGCGAGAGCTCATGGCGGGGTACGGCGCGCTCTCGCCCGAGGTGCGGGCCGAGCGGATCGCGCGGGCGCTCGAGCTGCTAGAGGCGCCCGCCCCGGAAGCGCCGAGCCCGGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAGCCGCCCTTCGGGGCGGCTGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-17.80,-16.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : NA // Array 3 471349-470705 **** Predicted by CRISPRDetect 2.4 *** >NC_014221.1 Truepera radiovictrix DSM 17093, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 471348 36 100.0 39 .................................... CAACGCCCAGCCCCCCGAGACGCCCGACGGCAAACCGGA 471273 36 100.0 44 .................................... CGGTGGTAGCGGAGGATACGGTGGGGGTTCTCGACCAGGGTCTT 471193 36 100.0 36 .................................... AATTTATTAATTGCTCGGTCCACCAGCGCTTTAATT 471121 36 100.0 39 .................................... TTGAGGCGGACCAGGGCCCCGGGGACGATTTTTCGCATG 471046 36 100.0 43 .................................... CGCTGGTCGCGTCGCGGTTGCTGCGCAGCCAGAGCCAGAGCCA 470967 36 100.0 40 .................................... CAGGAGGCAACTGATGAGCACGATGGTCGTTGATATCTCG 470891 36 100.0 40 .................................... CAGGTGAGCGTGACCTCCCCACGGGCGCGGAGGCGGTGGG 470815 36 100.0 39 .................................... CCTTCAACTGGGCGTTAGAGACACGGGGCATGAGAATGT 470740 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================ ================== 9 36 100.0 40 GTTGCAAAAGGGTCTGCCCCGTCAGGGGATTGAAAC # Left flank : GGGTGCAGTATTCGGTTTTCGAGTGCTGGCTCGAGCCGCGCGAGCTGCGGGAGCTGCGCCAAAAGCTCGAGGCGCGCCTCAACGAACGCGAGGACAGCGTGCGCATCTACCCCGTCGGTTCTCCCGTAGAGGTGTTGGGGTCAGGATCGCCAACCGAAGACGCGCGCCTATTTATGTTCTAGCTCTAGCTGCAGCCGTTTCGCGAAACGTTGCTACCGGTAGCATCTCGGAACGTGCCGAGCGAATTTTTATTAGTGTAAGGGCATCTCCAACCAAATGATACCTGCTCGTGGTATGGTTTTCCTGCCGAAGGGGGCGCGCACCTTGACAACCCACGCTAGCCGAGAACGTTTCAGCGTTTGTCAGTCGTCTTTAGCGGTTGTCCACAGCCCGCGCCTCGTCCTTTTGGGGTTATCCACAGGCCAAGCTGTGGATAACTTGGGGGGGTGTCAAATGACCCCTCAAAAACCCCTTGTAAGACAGCTCTCCCAAAGGGTAGA # Right flank : GCGTGGCCGAAGCCTTTCAAGGCTCGGGCTTAGCCCGTTTTATAACAAGCCGGTCGTGACAAATGGTGCAGCTTGTCGGGGCTCTCCCCGCGTGCGAGGGCTCGCCCGACGAAAAAGCCCCCAGCTTGTTACCGGCACCTCAACAAAATGTGCTAGACTCAAAAGAACGGGGCGAAACAAGGCCATATAGAGCAAAAGGGGGCAAGCGAAGATGGTTGCGGATCGGGCGATAGAGGTACACGCTTTCTGGGATGAAGAGGCGGGCGTATGGGTGGCAGAGAGCGACCATGTACCCGGCCTTGTGACTGAAGCCGAAACCGTGGAGCAGCTAGCTGCCAAGCTCGAGCACCTTATCCCCGAACTCTTGGAGCTGAACGCGCCTGAGCTTCTGGGCGCCCCCACGGTCAACCTGAAGGCTGAGCGCACCCTAGTACGGGCACCAGCCCGGCCCTAGTGGGCCTAGTACTCTTACACGCGCTGTAGTGGCGGACTACGCGCCA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAAAGGGTCTGCCCCGTCAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.20,-7.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [41.7-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : NA // Array 4 477080-476285 **** Predicted by CRISPRDetect 2.4 *** >NC_014221.1 Truepera radiovictrix DSM 17093, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================== ================== 477079 36 100.0 39 .................................... GGGCAGAAAGGGACATCATGTTTAAGTTTGTAAATCTCA 477004 36 100.0 37 .................................... CCTTCCGCGCGGGGATGGCGGCGCAGTACGGGGGCCT 476931 36 100.0 44 .................................... TTCTGAACGCTATTCCTGATTCTGGTCAACCCTAATGAACCTGA 476851 36 100.0 39 .................................... CGAATGAGGTCCCCGACCCCCACCGGCACGTAGTCTGTT 476776 36 100.0 46 .................................... TTGACCCGTTTGGGCAGGGCGGCGGGGCGGACGGTCTTCAAGCTGG 476694 36 100.0 37 .................................... AGCCACACCCGCATGGCGTGGCGGTCAATAGTCACCA 476621 36 100.0 42 .................................... TTGCCGGAGGCCAGGGTGGTTATCCACTCGAATGGCCTCTTG 476543 36 97.2 40 ......................T............. CCATTTACGCTGCTTCCGAGGGGCTCCGGACGCTCGTTGT 476467 36 100.0 38 .................................... GTCTGACCAGGAGTGCAGAAGGGCGTAGACGCTCTCCG 476393 36 100.0 37 .................................... AATAGGAAATTTTTCCCTATTCTAAACAAAAATTCTC 476320 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================== ================== 11 36 99.7 40 GTTGCAAAAGGGTCTGCCCCGTCAGGGGATTGAAAC # Left flank : CGCCCCCCTAGCGGTCCCCTCCGAGGTCGCCTCACGCCTGACCGAGGGGTGCGTGCCCCGCTTTTTTGAACTGCGCAGCCGCACCGTCTACGCCCACGACCCCTTTACCGGCTTTCTCGGCCGCGTCACCTTTCACCTCCGCGGCGCCAGCGCCGACGAGGCCCACTGGCTCGCCATCCTCGGCCGCTTCGCCTTCTATAGCGGCGTCGGCGCCAAGACCACCCTCGGCTTCGGCCAGGTGCGCCCGTACCGCCCCACCCCAGGTGCATAACCCCGCAGCGTATGTTATTCTTATACCGTCACGCCCCTTAGCGTGACGCGCACCTTGACAACCCGCGTTAGCCAAGAACGTTTCAGCGTTTGTCAGTCATCTTTAGCGGTTATCCACAGCCCGCGCCTCGTCCTTTTGGGGTTATCCACAGGCCAAGCTGTGGATAACTTGGGGGGTGTCAAATGACCCCTCAAAAACCCCTTGCCAGACGGCCCTCTCAGAGGGTAGA # Right flank : AGGGAGCCCACCGTCTAGCGGCCATCTTGACGCGTACCTCGATGAATTGGTCTATTTGGTCAGCCACGCCCAGCATGAAGTTGGATTTGCCTACCAGCGGATTCATGATTGGCTTTCTGGCAGTTGCAGGGCTGGTCGTCAAGCTGTGGGGCGCGGCTCATTTGCGTCGTGAACAAGGGTGAGCACGGTTCTGTCCGACAAGCGCTCGCACCTGACGGCTTCGCCTCGCTGCGCTCGGGGGCCGAAGGCTAAAACCGTGCCCCGCGAGCGCTTCGTAAGCTTCGCCTCGCTGCGCTCGGGGGCCGAAGGTTGCTGTGGAGAGGTTACGATGGACTCGAGGCAAAGACCTTGTTGACAGGGGCGCGCTTTTTCGGCGGGTTGGCGTGCTGGCTGCTGGAGCGCAGCAGAGGGCCACGCCGGAAACGGTTCTCGCGGCGTGGTTGGAAGTGCCTACCGAGAACCCCCGACACCCCCTTACGGGCACGGGCGACGAGGGCTCC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAAAGGGTCTGCCCCGTCAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.20,-7.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : NA // Array 5 1805256-1807020 **** Predicted by CRISPRDetect 2.4 *** >NC_014221.1 Truepera radiovictrix DSM 17093, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 1805256 37 100.0 34 ..................................... GTTGGGCCGCTGCGAGCCCTCAAGGGGGCGTCTG 1805327 37 100.0 35 ..................................... GGGGCGCTAACAGCCACACGGGCGAGTTCGACACG 1805399 37 100.0 35 ..................................... TTGCTGACCCTGCACCTCCGCGGGCAGGGAATTGA 1805471 37 100.0 32 ..................................... CCGAGATGTGGCCTTGGAGGCGTGGCTGAGGG 1805540 37 100.0 37 ..................................... AAGCTCCAGCGGTGCGCGCCCTCACGCGGGGGGAACG 1805614 37 100.0 34 ..................................... TGATCAAATTCGCGGGGGGTAAATTCGCGGGGGG 1805685 37 100.0 35 ..................................... TGCTGCCCAAGGAGGCAATCATGACGGACGAGATA 1805757 37 100.0 34 ..................................... GGTCGCGCGCGCTGGAGCGTCAACCGGCTGTCCA 1805828 37 100.0 34 ..................................... GAATCCAATGTCAGGGACGACATAGAGGAAATAA 1805899 37 100.0 33 ..................................... GCTTTGCAGAAGCTTGTCTATCAGCATGTCAAG 1805969 37 100.0 37 ..................................... AGAAGCCTGAGACTGGATAATCTCCCCTATCTCGTCA 1806043 37 100.0 34 ..................................... GTGGGATCGGCGGCCAAGGGGGTGCGCTCGGCGA 1806114 37 100.0 36 ..................................... TGTCGACATCGCCACCCACCCAGCCTTCGTCTACGA 1806187 37 100.0 36 ..................................... ACCAGAGGGAGGTGTGCAGGTATCACGTCACGGACA 1806260 37 100.0 35 ..................................... TGTTGCAACGGTCCCCGGTGGGCGGGGCGGGGTGG 1806332 37 100.0 35 ..................................... TTGACTCTCTCCCGCACCCCGACCTCAGCTGCATA 1806404 37 100.0 35 ..................................... ACCATCACCCAACACACCCTGACAATGACCGCAAT 1806476 37 100.0 35 ..................................... ACCGTCCGCCTCGACGTCTCCGCACCGGTGCACTA 1806548 37 100.0 35 ..................................... TTTGCGTCCTACCAAGAGCTGTCGATCGAGGGGGT 1806620 37 100.0 37 ..................................... AGCGGGCTAAAAGCCGAAAGCGCGAGTTTTATGGGGG 1806694 37 100.0 38 ..................................... TCCGTATCCACGGAAAACTGGCGCCGCAGTGCCTCCCC 1806769 37 100.0 34 ..................................... AAACGGCGCCGCGGCTTGCGGGCGCCGCCGGATC 1806840 37 97.3 36 ..........C.......................... CTGGTGCGCCAGGTCTTTCCAGACGCGCCGGCTGTT 1806913 37 97.3 34 ..........C.......................... TGCTCGAGCGCGAAGGTGTTGGCGTCGAGCACGT 1806984 37 97.3 0 ..........C.......................... | ========== ====== ====== ====== ===================================== ====================================== ================== 25 37 99.7 35 GTTGCAGCCGTCCTTCGGGGCGGCTGAGGATTGAAAC # Left flank : TTTTCTACCGCTAGGAGGCCAAAACCGCCGTGAACGTGCTCGTCACCTACGACGTCAACACCGAAACCCAAGCGGGGCGCCGCCGACTTCACAAGGTCGCAAAGACCTGCAAGAACTTCGGCCAGCGCGTGCAGTACTCCGTCTTCGAGTGCCGCGTGAACGCCGCTCAGTACGAAGACTTAGTCGCTAAGCTCAAAAGGATCATCAACCCCAAGAGTGACAGCTTGCGCGTTTACAAGCTGCGCGGGGAGCGGGAGGAGTTCCTCGAGACCTTCGGCCTCGACCGCCATGTAGACTTTGACGAGCCTCTCGTCCTCTAGCCGCGCGAACCCCAAGCGAGTGCCCAACCCCTGGGGGGTTCGCGCAAGCCGCTTTTTGCGTGAGCGGCGAGAACTTTGATAACTAAGAAGCTGTGCCAAAGGCTGCGCGAAGCGCGTTGCGGACAGGTTCGCGCAAAGCGGTGCTGGAGAAACGTCTCTGACGCGTGCTATGCTGCGACC # Right flank : CAAAGCAACAAATGGGTCGTCGTTCCCATGACAAACAGCAGACATTGTTACAATGGCCTCTCGGCGCGACGTGGAGGGGGTGCTGTCTGATGTGCGGCATCCTTTTCCAGACTAGACGCTTCTAGCGTGCAGTCGAGAGCGACGCACCCGTCGGTGCAGCTTGGCTGTTCATTTTCGTGCAAGCGGCGCATTTTGAGCAAAAGTAGTGATGTTCTAAGAGCGAGTAGATTCCAAGGAGGGGACACTTGACGCCTATTACGAAAACGGCACCGACCATTCAAACGGGGACGCGCTTGGTGGGCAAACCGCAACACGAGCACCTGCGGTGGTTTGCCGAAGGGGTTGAAAGCGTGCTACGTGCGCACGGCCACACCTTGCTCGGCGAGGACGAGGGCACGCCGCGGCTCGTCATCAACTTCACCGACGCAAAACGCCCACGCTCGTTCCGCCGCAAGTCGCAAGGGACGTTTGTCGTATCGGTCGTCGAGGTGGGAAAAGAG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAGCCGTCCTTCGGGGCGGCTGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-15.10,-9.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.64 Confidence: HIGH] # Array family : NA // Array 6 2407299-2406347 **** Predicted by CRISPRDetect 2.4 *** >NC_014221.1 Truepera radiovictrix DSM 17093, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 2407298 36 100.0 40 .................................... CATGGTTTTACAAGACGGTGCGCCCAGGGCGGTTGCGTTT 2407222 36 100.0 40 .................................... CGGCGCATGTTGGTGATGTCCTGCCAGCTACCCTCGACGA 2407146 36 100.0 41 .................................... GGGTGGTGCTTGAGGACCAGGCGCTTGAAAGCGGCGCGCAG 2407069 36 100.0 41 .................................... CTTACGCGGCTCTCCTCGACGCGGGTGAGTATGACGGAGCG 2406992 36 100.0 40 .................................... CGGCAGGTGTCGGTAGTGTCGCGAAGGTGAGGAGCGTCTG 2406916 36 100.0 41 .................................... TGGCTTTTTCTGAACGCCAGGATAGCCATCTTATGCCTCCA 2406839 36 100.0 41 .................................... TAACTGGGTGTGGCGTGAGGTTTACGAACATGAATTTCCCT 2406762 36 100.0 41 .................................... ACAAACGAGGTTGCGCCCCCCTCAGATGTCCCCTCCGATGG 2406685 36 100.0 41 .................................... CGTTTCGTAGCGCCCGGCCTGAGCTATGACCACAGGTTCGT 2406608 36 97.2 39 ...G................................ AAGAGACGCATAAAAAGGGGGAACCGAAAGACGAGGGAG 2406533 36 97.2 41 ...G................................ GAGCCACCGGGTCCTACCGGTGGCGGTGCTGTGAACGTGAA 2406456 36 97.2 38 ...G................................ AATCACAGTTGAGCTGCCTACAGAAGACCTTTGCCCTA 2406382 36 97.2 0 ...G................................ | ========== ====== ====== ====== ==================================== ========================================= ================== 13 36 99.1 40 GTTACAAAAGGATCTGCCCCGTCAGGGGATTGAAAC # Left flank : GCTCGATCTGGTGTGCTGCGAGGTCATCGGCAGTTGTAGAAGTGTTCATGAGCTCTTCTCCGGGCTTTGCGATCCACGTCGGCTAATCAGGACGCTCCGCTGGTGTGGTAGTCGGGACGTCAAGGGCTACGCCGTACTGGTTACCCAGCTGCTGCGCTCTACCTTTCGCCAGCGTCACTGAGCGCACTTGAATGACTCCAAAGTAACATAGAGGCGCAAACGCCAAGTCTTAAATAGCGAGCAACCCGCCAGCGCCCCATAAGCTGCATAACCCCGCAGCATATGTTATTCTTATACCGTCACGCCCCCCACCGTGACGCGCACCTTGACAATCTGTGTTAACGCAAGAACGTTTCAGCGTTTGTCAGTCGCCCTTAGCGGTTATCCACAGCCCGCACCTCGTCCTTTTGGAGTTATCCACAGGCCAAGCTGTGGATAACTTGAGGGATGTCAAATGACCCTCAAAAACCCCTTGCCAGACGGGCCTCCCAGAGGGTAGA # Right flank : CCGTCAATGGCTTCTAGTGCGGCCATCGGGAGGCGGGTAAGCTCCACTCCTTAGCAGAGTGGATCGTTGGCCGCAACCAGTAGGTGCAAAGAAGCAGTACGTGTAACCAAAAAAAGCACCCGCCACCTTGGGCGGGTTTTACTTTTGCCGTCTCCGACGGGCTTTTTCTTGGAGCCAATGGTCGGATTTGAACCGACGACCTATCGATTACGAATCGATTGCTCTACCACTGAGCTACATTGGCACGCGCTAGAGGTATCACCCTAGTCGAGCGATGATACCCGGATGCCTAGCACTTGTGGTGGCCAGAGGCGGGATCGAACCGCCGACACTACGATTTTCAGTCGTATGCTCTACCAACTGAGCTATCTGGCCAAGGCGTCGGCATCGTTGGCGTGCAAACTCTCGCCGATGCCGACGGGCTTTTTGGCGGAGCCGACGGGATTTGAACCCGCGACCTTCTGCGTGACAGGCAGATATGCTAACCCCTACACTACGGC # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAAAAGGATCTGCCCCGTCAGGGGATTGAAAC # Alternate repeat : GTTGCAAAAGGATCTGCCCCGTCAGGGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.20,-7.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [40.0-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : NA // Array 7 2489905-2491460 **** Predicted by CRISPRDetect 2.4 *** >NC_014221.1 Truepera radiovictrix DSM 17093, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 2489905 29 100.0 32 ............................. ATGCAGCGACTAAAGCACCGGGCCGAGGCTCT 2489966 29 100.0 32 ............................. CGTTCGGGGTATCGCTACCCCAAGTTCCCGTG 2490027 29 100.0 32 ............................. TCGCGGACGCGCGTGATTACCGTCAGCGTCTG 2490088 29 100.0 32 ............................. GCGGCGGAGACGGTGCTGCGGACGGTTGCGCG 2490149 29 100.0 31 ............................. TTGCCGCCGCCGCGCTATCTGAGCCCGTACC 2490209 29 100.0 32 ............................. GACGAGCAGGGGCGCGTCCGCTACCTCGTCGA 2490270 29 100.0 32 ............................. GGGGAGCTAGACGCGGCATGAAAAAGGGCGGC 2490331 29 100.0 32 ............................. CTCCAGGGGCTCGGGGAAGTTCAGCCAAACAT 2490392 29 100.0 32 ............................. CGCCTTGAACGAGCGGGTATCGGCTCTATCTC 2490453 29 100.0 32 ............................. GTACAGGGTGAGCACCCTCCCCTCCCCTTCCT 2490514 29 100.0 32 ............................. TAGGCACCTTCCTCGGCGTTGTAGAAGAGGGC 2490575 29 100.0 32 ............................. GACAACGTGGGCAAGGTGTTGGCTTTTGCCCA 2490636 29 100.0 32 ............................. AAGTACATCAACCGCGTCAAGGCACTCGGCCT 2490697 29 96.6 33 ............................A GTCTCTCTCGCCCCGCCCCCCCGGCATCGTCAG 2490759 29 100.0 32 ............................. TTGACGGCTTCAGGCGCGACGATGTTCAGAGC 2490820 29 100.0 32 ............................. GGTATGTCGCTGTAGCGCTTGGAGCAGGTCAG 2490881 29 100.0 32 ............................. AGATTGGTATGTGCTGACACGTGGCGACACCC 2490942 29 100.0 32 ............................. AAGCCGCGCAGCTCACCATCGATATCGCCAAG 2491003 29 100.0 34 ............................. TGGGGTGAGGTCGATCTACTCACCGGCTCGCACC 2491066 29 100.0 32 ............................. GACCGGGGCTTGTCCCTGAGAGCAAACGTGGC 2491127 29 100.0 32 ............................. GGTAGCAACAATCGCCTGCATCAGATCACGTC 2491188 29 100.0 32 ............................. GCGCTGGGCCAGAGCGTCGACCCCAACGACGC 2491249 29 100.0 32 ............................. CGCGGGGGAGGTCTACGGCGAAACTGAAACCT 2491310 29 100.0 32 ............................. CGCGGGGGAGGTCTACGGCGAAACTGAAACCT 2491371 29 100.0 32 ............................. GTGCTCCCCGGAGAGAGGAACACCCCAACCGG 2491432 29 79.3 0 ..............A.C.....C...ATA | ========== ====== ====== ====== ============================= ================================== ================== 26 29 99.1 32 CTTTTCCCCACACGCGTGGGGATGAACCG # Left flank : CCCCGGCCAAGGAGCTCTACGCCAACCCCGTGCACCCCTACACCGAAGCGCTCCTCTCGGCGGTGCCCATCCCCGACCCGACGGTGCGGCGCGAGCGCATCATCTTGCAGGGCGACATCCCTAGCCCCATCAACCCGCCCTCGGGCTGCGTCTTCCGGACGCGCTGCCCGATCGCAGCCAAAGAGTGCGCGGAGGTCGTGCCGCCCTTGGAGGAGGTCTCCCCCGGCCACTTCAAAGCGTGCATCCGGCGCCCTGGGCCGGTCTAAAGCTCTTTCAACACCTCTGCAAGCGCCCCGAGTGGGCGCTTCGACACTTCCTCTCAGCACCCGGTGCCCCCCTACGGCTTTTTGGAATGGCTGGATGTCGGTAGCCGCGAGGTTTTCAAAACGCATAGCAAAGCCGCCTGACGCACTCGGCAACGAGCCTCGAGGCGAGAACCATGACAACCTAGCTGACACTTCCGAGGGGGGCAGCCCGTAGATTTGCCGTGCTGGGCTAGT # Right flank : ATCTTCAGCGAGTCTCTAACCGGGCTCACACCCCACACAGGTGAACCTTAAGCCCCAACGCGGCGAACATCGCCGCTTTGACCTGCAACACGTGCTCAGCTTGTTCGGACGGAACGTAGGCCACCTGGATGTGGTTGGCTTTGTGCCGCGCCATCATCTGGTCGCGCGTGACGCCGCGCAAGACCGCGTGCATGATCGGCCACTGCGGCGTCGTCGCCTCCCACCGCCGCCGCGTCTCCTCCTCGGGGAGCGCGACCACCGTCGCCCGCCCGAGGTCAACCTCTAGAGCGCCCCCCTGCACGAACACGCGGCTCCAGATGATCTCACCTGGCTTACTGACCCCCTTGAGCGTTCCGCCCCCCAAAGGAAAGTACATGGGCGGCTGCCGCTCGCTCCGCGCCCCCGCGTAGCCGTCTACGAAGTGCGAGGCGGGGGCCGCGCCGGAGATCTCAAACACCCAAACGAACGGCTCCTCCCCAGCGATCGGGTAGGGCTCGCCC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCACACGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 8 2507590-2504070 **** Predicted by CRISPRDetect 2.4 *** >NC_014221.1 Truepera radiovictrix DSM 17093, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2507589 29 100.0 33 ............................. ATGCTCACCGGCACCGACTCAGAGGTCTCGGGC 2507527 29 100.0 32 ............................. CTTGTCGGATAAAACCGGCCAGGGATTACGAC 2507466 29 100.0 32 ............................. CCCGCTCGTCTCCTTTCAACTTCCGAGATGGA 2507405 29 100.0 33 ............................. CCGTCGCACGCCCCCCCGAGGAGGTCGAGCATC 2507343 29 100.0 32 ............................. GCGCTTGTCAACGGCGACGGCATGCGCATCCC 2507282 29 100.0 32 ............................. AGCTCCAGTGCTCGCGGGTTGGGCCAGCACTG 2507221 29 100.0 32 ............................. CTGCAAGAGCTGTCACAGGATGAGCCGCAAGC 2507160 29 100.0 32 ............................. CGTGGCGACAGCTTTCATCATCATCCATCCTC 2507099 29 100.0 32 ............................. TCGTGCAGCGGTGTTCTTGTAAAGTCGATGAA 2507038 29 100.0 32 ............................. TCGGTACCCGGTACGGGAGGGATGTGAACGGT 2506977 29 100.0 32 ............................. CGACCACGCACAGCGACCCCCAACAGGACGGG 2506916 29 100.0 32 ............................. GGACATGAGAACCTCCGGAGCAGTTTTTTGCC 2506855 29 100.0 33 ............................. TAGGGGCTCAAGAGCCCCTACCCACCGGCGGGC 2506793 29 96.6 32 ............................C TCTTGAAAGACAAATTCGGCGCCCACTACAAC 2506732 29 100.0 32 ............................. TAGTAGTAGGCTAGAGACCCGATCAGAACGCG 2506671 29 100.0 32 ............................. TTGACCACCTCGCCGTCGAGGTCGTTGACGGT 2506610 29 100.0 32 ............................. CGTTCCACCACCTGATGACGGCTGGGAACGGG 2506549 29 100.0 32 ............................. GCGCGGCGGCGCTGCTGGTGTTCCCGCCCGCC 2506488 29 100.0 32 ............................. GAGTCGGGCAGCTCGGCCATGATTGCTCGGGT 2506427 29 100.0 33 ............................. CGCCCAGCGTGCGCTCTCACGTGCTCAATCTGC 2506365 29 100.0 32 ............................. TTGCCGCCGCCGCGCTATCTGAGCCCGTACCG 2506304 29 100.0 32 ............................. CTTTCCGGCCTGAAAAGGAGTGGTGGGGCGCG 2506243 29 100.0 32 ............................. GTCGTTTCCTCCCTTCGGGCAGGCGTTCAGCG 2506182 29 100.0 32 ............................. ATTCGCCGGTCGATGAGCGCGTCACGCCACGG 2506121 29 100.0 32 ............................. AGGCGGCCCGGGCGGTGAGCGACGAGCAGGCC 2506060 29 100.0 32 ............................. GCTCAGGCGCTCCCCTACGTGGACCCGCGCGA 2505999 29 100.0 33 ............................. TACTTAGCCTTCCCGCCGCGCGGGTGGGCTAAG 2505937 29 100.0 33 ............................. CAGGGTCAAGGCGATAAGGCCAAGTGGGTTGTG 2505875 29 100.0 33 ............................. TACTTAGCCTTCCCGCCGCGCGGGTGGGCTAAG 2505813 29 100.0 33 ............................. CAGGGTCAAGGCGATAAGGCCAAGTGGGTTGTG 2505751 29 100.0 32 ............................. GTCCATGAGGACATGCAGATGCACCACCCGCG 2505690 29 96.6 32 ............................T ACGACGCCACCCACAGGCGTCCGGTTGACCTC 2505629 29 100.0 33 ............................. AAAATCGGGCTTCCAACCCGGACGTACCTAACC 2505567 29 100.0 33 ............................. CGGAGTTCGGGGAACCGTTCCGGTTTACGTTGC 2505505 29 100.0 32 ............................. CGCTCCAGGGCCAGCTCGAGACCTGGAGCCAA 2505444 29 100.0 33 ............................. ATGCGCTCGCCTAGGGTGTGGTCACTGCCACAC 2505382 29 100.0 32 ............................. CGAGGAGCGACACCAGGATAGACAAGGTTAAC 2505321 29 100.0 32 ............................. TCCAGGGGGTGGAGGCGTTGGAGCGGCTCGCC 2505260 29 100.0 32 ............................. GTGGTGAGGTTGTGCAGCTCTTCCTAGACGAC 2505199 29 100.0 32 ............................. GGCGTCAGCAACTTGCTCGGTATCGGGGGCTA 2505138 29 100.0 32 ............................. CAAACAGCGTGATTTTCAACAGGGCTAAAGCA 2505077 29 100.0 33 ............................. ACCGGCGTGCTCACCGGCGTGCAGCGCGTCATC 2505015 29 96.6 33 ............................A GCGGCGCGGGTCGGTGTGGTGCATAAGGTATGC 2504953 29 100.0 32 ............................. TTGGGCGGATGGATAAGCGCACCGGTCTGGCT 2504892 29 100.0 32 ............................. CCTTAACCTTCCGAGCGAGTCAGTAGGGGCAT 2504831 29 100.0 32 ............................. AACGAAGCGCTCCACAGGTCACAGGCGTCAAA 2504770 29 100.0 32 ............................. AGGCGGGTGAGCACGCCATGATCACCTGGCTC 2504709 29 100.0 32 ............................. TGGGTGCCGACCAGATAGGCGTTGGTAAACTC 2504648 29 100.0 32 ............................. GAGCTGGCCGCCATACACATCCTAGCCTCTCA 2504587 29 100.0 32 ............................. ATGGCTTTATGGTGACTAGCGCTCTGCACGGC 2504526 29 100.0 31 ............................. CAAGCTCGGCCGTCACTACGAGGCCATGCTC 2504466 29 96.6 33 ............................A GAGCGCCTGGTTCGCCCGCTGGAGTTGATCCGC 2504404 29 100.0 32 ............................. GACCTTGACGACCTCGTCAAAGGGAGCGAATT 2504343 29 100.0 32 ............................. GACACTGATAGGCCGTGCAGCGCATGTGCTAG 2504282 29 100.0 33 ............................. AAAGAGCCCCAGTTGCGAAATGCCGCCTTCGGA 2504220 29 100.0 32 ............................. GCAATCCAGGCGTGCTCCAGCGATTCGTCGAG 2504159 29 100.0 32 ............................. GTTCATCCCCTTTTGTCAAGATTGAGCCAGTC 2504098 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 58 29 99.8 32 CTATTCCCCACACACGTGGGGATGAACCG # Left flank : CCGACCCCTACGCCGACGACCCTTCAAAACCCGGCGAGCTGTGGGACCCCGCGGGAAATGTCGCCGGAGGTGTCATCTATGGTGGTGATGGTGCTGGAGAAGGTGCCCAAGAGCCTGAGGGGTGAGCTGACGCGCTGGATGCTCGAGGTCTCAACCGGCGTCTTCGTCGGCTCGATGAGCGCGATGGTGCGCGACTTGCTGTGGGACAAGTGCGTTGAGAAGAGCCGCGCCGGCCGTTGCTGTCAGCTTTACCGCACCAACAACGAGCAGGGCTACGCCATCCGCATGCACGGCGACAGCAACCGAAGCATTCGTGACTTTGACGGGCTTATGCTCGTCACCGTCAAGAACGCCAAGTGGGAGCAGATGTTTGTCGAGCCAGCAAGCTGATCGCTGTGCTACTGTGGCAGCGTGGTGCGCCACATGCCGAGAACCTTGACAACGAGACCTCTTGGATACTTCCGAGCCCTTTTCGCGCGTTTTTAGCGTCTGGGTCTAGT # Right flank : GAGCTCTCTCCCAACTCGTTTGCGGGGGTGCCCGAGCACACCCGCGAGGCGAGGCGCGCGCAGGGGCTGCAGGATGCCTAGGCTCGCGCTGCGCGCCTCGGCAGTGTTTGCTAAGGCAAGCTACCGCAAGATCAAGCGCGTGCGCGTGGACCGCGTGGTGCAGAGCTATTGGGTTAGGGTGAACGGCGTGAACGAACTCCCCGATGACGCCCCGGTGGGTGCAGCGGTGCGCTTCCGGGAGGCCAGCGGGCGTGAGTGCGATCTCCTCAAGGTGGCTGAGGTGCCTGAATGGCTGCAGCGCCTGCGCCGCTGCCCCTACCGCAGCGTCTGGTACGAGATAGACAGCTACCATGACGATCTGCAGAAGCACGCCGTGCTGCGCGATCCGCGCGCCATCTTGCGCACCACCCTCGAGGACCTTGACCCGCACGTCACGGTGCTGCAGGAAAACGATCAAGCGCGCGCCGTGCGCTTTTTTCGCACCACAGCCTCCTTGGGCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTATTCCCCACACACGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTTTCCCCACACACGTGGGGTTGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 9 2587551-2586446 **** Predicted by CRISPRDetect 2.4 *** >NC_014221.1 Truepera radiovictrix DSM 17093, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 2587550 36 100.0 40 .................................... ACATCTCACGTTTTACGGAGACGGTCAACAAACTCGCCAT 2587474 36 100.0 41 .................................... TTTAAAATTAACTATCATTTCTCCCCTCCAAATGCTTGTGA 2587397 36 100.0 43 .................................... ACACGCGTACCGGCGGCGTCGAGGTTGCGGCGCTCGAGGTGCG 2587318 36 100.0 42 .................................... AGGAGCGTCTCGTAGGCAGTCCTATCTTTCCTAGGGTCTGTG 2587240 36 100.0 39 .................................... TGAAGCGTCGCCGGTCGTCTCTGATCACGTTCGGGTTGA 2587165 36 100.0 41 .................................... TTAACGCAGTCCTCGTACTGCATCTCCGCTCCTTTCTAGTA 2587088 36 100.0 40 .................................... ACGTGTGACGTACGCCCAACCCACTTGACCTGAGTCCCAG 2587012 36 100.0 40 .................................... CTCTCGTCCACCGAGTAGAACTCGTTGTCAGTAACGTCAA 2586936 36 100.0 36 .................................... TCGACACCCCGTAACTCAGCCGGGATGTTTAAGAGT 2586864 36 100.0 40 .................................... AAGTATGCGGCCCCATGTACGACGAGGTAGATGTCCCCCG 2586788 36 100.0 39 .................................... TCGATACCGGCGCGCTCGACATGCGCGTGCCAGGACTCT 2586713 36 100.0 41 .................................... CCGCCTGAGTCTGGGGGACGCTCCCCTCGGCGTCAAAACCT 2586636 36 100.0 41 .................................... CGGTGCCGCCGAACTCAAAAGTGCCCATGTCGTAGCCGGTG 2586559 36 100.0 42 .................................... AAAACCTCGTCAACCGCAAGCCATGTTACGTTTCGGATGCGG 2586481 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =========================================== ================== 15 36 100.0 40 GTTGCAAAAGGATCTGCCCCGTCAGGGGATTGAAAC # Left flank : GAGCTCGCCAAAGCGCGCCTCAACGGCGAGGGGCGCGTCAATTTGCGCCCCTCCGGCACCGAGCCTTTGGTGCGGGTCATGGTCGAGGGGCGCGACCCCGTGGTGATCGAACAGGTCGCCCGCGACCTCGCCTCGGTGGTCGAACGGGCGGCCTTTTAACCCCCCCGCGCCCACCGCGCGCCGCGTTGCCCACCCGGGTGACGCGGCGCTGCGGCTTTCGCGAGCACCCCAGCACCGGCCCACCCCGCCACCCCACCTCCCCAGCTGCATAACCCCGCAGCGTATGTTATCCTTATACCGTCACGCCCCCACCGTGACGCGCACCTTGACAACCCGCGCCGACCGAGAACGTTTCAGCGTTTGTCAGTCATCTTTAGCAGTTATCCACAGCCCGCGCCTCGTCCTTTTGGGGTTATCCACAGGCCAAGCTGTGGATAACTTGAAGGGTGCAAATTGACCCCTCGAAAACCCCTTGCCAGACGGCCCTTCCAGAGGGTAGA # Right flank : CGGACGAGGGGGGTTCGCCGCTAGGGTTTCGGGTTCTGGAGCGCTCTAAAGCTTCAGACGGGTGCGTTAGAGTAGCGCATGATCGACCTTACCCGCGCCCTCTATCGGGGGCACCCCAACTGGCCCGGTGACACGCCCTTTACGCTCGAGCCCACCTCCAAGATCGCCGAGGGCGCCGCTGTCAACGTCATGGCGCTCTCGACCTCGACGCACGTGGGTACGCACCTCGACGCGCCGTACCACTACGACGAGGACGGGGTGCGTCTGGGGGAGGTGGCGCTCGAGCGGCTAAGCGGCCCCGCGCAGGTGATCTACGCCCTGGCGGGGCTCGAGGCGGGGCTTTTGGAGCCCTTTCCCAGGCTCCCCGAGCGGGTGCTCTTCTTTACCGGTCAGCCCGAGGTGTGGGAGGCGTTTCCGGAGCGCTTTCACACCTTTTCACCCGAGGTCATCCACCTGCTGGCGGACCGCGGGGTGCGGCTCATCGGTACGGACGCGCCGAG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAAAGGATCTGCCCCGTCAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.20,-7.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [36.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : NA //