Array 1 20554-18881 **** Predicted by CRISPRDetect 2.4 *** >NZ_NKUH01000065.1 Xanthomonas sp. LMG 12460 strain LMG12460 LMG12460_contig_65, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 20553 31 100.0 34 ............................... CGGCACCGGACCCGGCGCGGAGGCTACCACGTCG 20488 31 100.0 34 ............................... CTGCACTGCGTGGCGTCTCAGATCGACATCACCT 20423 31 100.0 36 ............................... TCGACCGTGATGCCGCTGACGAGGTCCGCGCCTGGA 20356 31 100.0 33 ............................... TCGTCCATGCCCATGTACCGCTTGAAGCGGTTG 20292 31 100.0 37 ............................... CGCAGCTACGCGGATCACCCGCGGGTGCTGGTGGACT 20224 31 100.0 34 ............................... CCGCAGAAGCCGGCGCCTCCCGATCCGCCTGGAT 20159 31 100.0 35 ............................... ACAGCCGGCCAGTTGTCGGCCATCGCGGCAATGCC 20093 31 100.0 36 ............................... CGCTTGTCCAAGCGCGAGAAGCGCAGCGCCGACATC 20026 31 100.0 34 ............................... CACGAAGGCGCGGCGGATGCGGCGGCCGTCGTCG 19961 31 100.0 35 ............................... CTATCTGCGCTGCCCTGCCCGCTCTGCGCCACTTT 19895 31 100.0 34 ............................... CCTGTTGAAGGTTGATGCGTGCATGTTCGCCCCG 19830 31 100.0 34 ............................... TGGCGCAATGATGTCGTGCTGCAATCCTTCGCGT 19765 31 100.0 34 ............................... GCCTTAGCTACCCCGTCTAAGTAGGTCAGGTGAT 19700 31 100.0 34 ............................... ACGGCCCAGGCCACGCCGGTTTCGGCCGGGGCGT 19635 31 100.0 34 ............................... CCCTTCATGATCCCCGTGCAGTCGATGCTCATCA 19570 31 100.0 35 ............................... TCCAGTTTCAGGTAGGTGATGGAAGCGGTGGCGGG 19504 31 100.0 35 ............................... ATCGCAACTGCATGAATTTCTGCGGCTTTTGCCGT 19438 31 100.0 34 ............................... GCGCTCTCCAGCACGCCGATTTGGGTGCGCGACG 19373 31 100.0 35 ............................... ATGTCGGCGGGCATCTGCGTCGCGGAGTCGAGCCC 19307 31 100.0 36 ............................... CGCAACGCCGTTGAGGGGAATTGGCCGCGCTACTGT 19240 31 100.0 34 ............................... TGCGCCGGCGTGCTGTTCGCCCTGCTCGTGATGG 19175 31 96.8 35 ..........T.................... GACTGGCCGACGTGGTGCTACATGCCGATTGCCGT 19109 31 96.8 36 .C............................. CCCGTGCGGGACAGCTATGACAAGTACCAGGTGTCG 19042 31 93.5 36 ...........G...A............... GACGATAGACGGCACCCGTTCTAAGAGCGTTCCCTC 18975 31 87.1 33 ...A..T.A.........T............ TCCTTGCCGGCAGGGACTCGCTCACGCATGCCT 18911 31 71.0 0 ...C....A..CAA.....C...G.G...C. | ========== ====== ====== ====== =============================== ===================================== ================== 26 31 97.9 35 GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Left flank : CGAAGATTGCGCCGAGCTGCACACCGCGGCACCGGCGATCCTGCACCGCCGCGCGCCGACACTGGTGGCGGCGTTCGCGCAACGCGCCTGGGCACTGCCGGAACGGATCGATCGCGTCTATTCGCCGCAACGGGCGCTGGACGCACTGGGCTGGCAGCCGCGCCATGGTTTCGCGGAAGTGCTGTACCAATACGACACGCACGTGCCCGAGGTGTTGCCGCCCAACGACGGGCGCGCCGTCAGCGACTGAGCGCCTGGCTCTGATCGGCACACCGGGTTCGGATGGCGGAGCAAGGACGTGCGCCGTCGGCGCGAACCGGAAGCGCCCGGGGTTTTACCGGCCGGTTCGCGAATCCCGATAAGCACTTGATCGAAAAAGCGAAATGCCTGGGCAGCGTGAAACCGGGCAAGGCAGCCCCGCCCGCTGCACGTCGCCGCACGCCCGTTTCGCGAAATCGGCACTTTTTCCTTAGTCCCGGCCGGCAGTTATGCTGAGGGCT # Right flank : GTGCAGGCCCTTGGTTGCGCGGAGGAGCGATTCACGCCATCACCGCACCATGGACCTCAGCGCAGTAGCACCGAAATGCCGAGGCCGCCCTGCCAGTCCGGGGTCTGCGACGACAGGCCGCGCAGCACCGACAGATCCAGTTGCACGCGGTTGGCGAACAGCCAGGTGACGCCGCTGCCAAGCGCGCGCATCTCGTCCTCGCCGCCGCCGATGCCGGCCTCGACGTAGGCGCTCAGCGTGTCGCCGGCGTAGAAGGTGTAGCTCGGCGAGACGCTCCAGCCGGAGCCGTCCTCGCTGTCGCTGACATTGCCGTACAGCGCCAGGCTACGCCCATCCGGCAGGTCCCAGCCGGCGCTCACGCCCAGGTCGTAGCGGTGGCCGGCATCGCCGTACGGCGCGCGCCCGACCGGCAGGCTGGCGCTGCCGAGCAAGGCCCAGCTGACGCGGTCGCTGGCGCTGGGCAATGCCTGCTTCAAGCCGATGCTGGCGTCGCCGCCACT # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.80,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [17-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //