Array 1 848428-846537 **** Predicted by CRISPRDetect 2.4 *** >NZ_UFRH01000002.1 Pasteurella bettyae strain NCTC10535, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 848427 32 100.0 34 ................................ CTCGGTGTAATGATGTAGTTTTAAGCCGGAATGA 848361 32 100.0 35 ................................ ATACCCTCACCTTTATACTTTAGTTTTAAATATAT 848294 32 100.0 34 ................................ TCGCATTAATGGGAAAAGTGATTGAATTGAAAAC 848228 32 100.0 35 ................................ TTAACAAGCCAGCTATTTTCTCCGCCTTGAATTAA 848161 32 100.0 35 ................................ TCATTGCGTGGCGCACACCTGATTGCAATGTTTGC 848094 32 100.0 34 ................................ TTTCAGCGTGTTAATTAATGGGCGGTTCCGTTCC 848028 32 100.0 33 ................................ AATAATTGGTTTAAATATCCAGATATCCCCCAA 847963 32 100.0 33 ................................ CAATGTGTCGATGTTACCGTCAAGGCTTTCTTG 847898 32 96.9 35 G............................... AAGCTGAATAGCTCAAGGTTTGGCTTGAGCCTTTA 847831 32 100.0 34 ................................ AGTTTTACTATAGAAACTAACACTGGATATTGTT 847765 32 100.0 34 ................................ TTCAGTACACTATCAAAAAATTCTATCACTTTGC 847699 32 100.0 33 ................................ TTGCTCGGTCAAACTTATGGACGATTTAACGGC 847634 32 100.0 33 ................................ CTACTAAAGATATAGGTAAGCCCCCATCTTTAA 847569 32 96.9 35 T............................... GGTTAAAATCTCACTATCGACCAACCCGACTAAAA 847502 32 100.0 36 ................................ TTTAACACCTTTGATTGAGGTAAAAGATTTTACTGA 847434 32 100.0 35 ................................ ATAGATTGGCGTATCGTGATCCCATATCAATAAAC 847367 32 100.0 34 ................................ GGATCGGTTGCGACATTTTCAGTTATTACTAATT 847301 32 100.0 34 ................................ CACAAGTTACCGCTACGCTTCAACAGGTTTACCC 847235 32 100.0 35 ................................ CACTTGATCAAGGGTGCTTGTGCCGACGGTAATCA 847168 32 100.0 35 ................................ TAAGCAATAGGTTACAAGTTAGAATCTTGTATAGG 847101 32 100.0 34 ................................ CAGTATAAGGTTAAAACGCTCTCATTGACGATTT 847035 32 100.0 35 ................................ GGGACTGACGGGGTAATAAGTCGGGTCTAGTGTGA 846968 32 96.9 35 .....A.......................... CAGCCTGTGTTAGTGTTGGTCTTAATTTTTAACAC 846901 32 100.0 34 ................................ TTTGGTGATGACATATTCGCCACGGTGGACGATA 846835 32 100.0 36 ................................ CCAAAACGCGTTCAGTCATGTGGCTGATTTCAAAGT 846767 32 100.0 35 ................................ TGCCAGTATTGGCTTCGCTGCTATCGTAAACAATC 846700 32 100.0 34 ................................ CAATAATTGTTGGTCATCTTCTGATAAACGATTT 846634 32 100.0 34 ................................ AATCGAAAATGCGACCTTGGTTGCGTGTTCGTGT 846568 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 29 32 99.7 34 CTCCGCTCCCACACGGGAGCGTGGATTGAAAC # Left flank : TGTACATACTCTTAAGGAATACTCTATGATGATTTTAATTACCTATGATGTATCGCTCGAAACTGAAGGTGGACAACGTCGTCTTCGGCATATTGCCAAACATTGCCTTGATTATGGAATCCGCGTACAATATTCTGTCTTTGAATGCGAAGTAACTCCTGCTCAATGGGTTGAACTCAAAGATAAACTCCTCAACACCTACGACAGTGAAACTGATAGCTTGCGCTTTTATCAACTCGGTGCAAACTGGAAACACCGTGTCGAACATCATGGAGCTAAAGCTGCGATAGATATTTTCCGCGATGTGTTAATCATTTAGTCCATCGCTAACCCTCAGTTCTCATCAAATCTATCACCGATTAGCGAATTTATTTTTATAATAAAATTAATGAGTTAAATTTCATTATGATTTGTTGATATACTGAGCCCTATTATATCTGGCATGATTAGCGAAACCTCGCTTTTCAAACCAGATATAACGTGCCACTATCAATATAGTA # Right flank : AACGGAATGAACCACCCTGCTATAGTGTTCGGTGTTCCTCATTTTACATAGACATAAGAATTGAAACTATTACTATCACTCCATGCCTATGTAACTGATTTTTATGCTGACAATTAAGCATAATTTAAAACAACTGCTCAAAATGCAACAGATGTTAATATCAACCTCTACATCGTTAAGTAATAATTTACTGTGTTATTAAAAATAGGAATACGTTAAGTTAAACTTTCGTTAGCTTGGATGTTAAGGTAAAATATTCTAATCTTTTTATTACACTGAGAACTTTATGGCATACACTACTTTTTCCCAAAATAAAAATGACCAATTAAAAGAACCTATGTTCTTCGGTCAAAACGTTAACGTTTCACGTTACGATCAACAAAAATATGAAACTTTTGAGAAACTGATTGAAAAACAACTTTCATTCTTCTGGCGCCCTGAAGAAGTCGATGTGGCACAAGATCGCATCGACTATGCCGCATTACCAGAACATGAAAAAC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCGCTCCCACACGGGAGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.80,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : NA //