Array 1 18025-18383 **** Predicted by CRISPRDetect 2.4 *** >NZ_OFAA01000048.1 Clostridioides difficile strain R 9385 isolate R 9385, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 18025 29 100.0 38 ............................. TACTTTTTATAAATATTTTATCCTTTTCCATCTCAAGC 18092 29 100.0 37 ............................. ATTATTGACCCTCCTGTGGAACCTCCTGTAGAGCCAA 18158 29 100.0 36 ............................. AAACAAAGCTTAGATAGCCTCAGAACTCTAAGAAGA 18223 29 100.0 37 ............................. TTAAATTCTTCATCATATAATCCTCTTCAATTAGTTT 18289 29 100.0 37 ............................. AGTATAATGTTGAAAAGTTAGAGAGTACAATCAAGAA 18355 29 69.0 0 A.....C.........AAT....AG..TA | ========== ====== ====== ====== ============================= ====================================== ================== 6 29 94.8 37 GTTTTATATTAACTAAGTGGTATGTAAAT # Left flank : ATCTAGGGTTTTATTTGACGTGCTCTTTTTTAGATAGTAAACTTTAAAATATAGATATTAATTATATGAATATAATAAAAAAAGTACTAATGAGTTACACTAGTACTTTATAACTACTTTTNNNNNNNNNNGTTTTAACTGTATAAAACAGTGGGTATAGTTCAGGCAGGAGTGACTTTAGTTTTGAACTAAAAATCAAGTTCAAAAAGAATAAACATTAGTATTTGAACTTCACTCTACATCTAAATAGATTGTAGTTCTTCTTGTTTTTATTATACCACAAATTGGTACAGATATTCAAAAATAATATATTTATGATATAATAAAAATGTAAATAGTTTTGCAGTGAGCGATATTTGTTACAAAGTAGGGCTTAACGCTTGAAATATAAGGTGTTGAGGGTATATGATAAACTTTATCATTTGCACTACTCATGGTTCACTGCAAATTTAAGAGAGTTGCACATGTGTAAGTATTGAAAATGCCCAGTTTATTTTGGG # Right flank : AAAACATGTATTTATACTTAAATTCTGTACCTATATAAAAAAGTGAACTCTGTCAACAAAGCACTTTTTTATATAGATAAATTATCATTTTGTTTTAAGATAGAAGATACTAATGCTAAATGTTTATCATTAGTATCTGTATGTACATAAAAGTTTAATTTTTTATATAAATTTGCTCTTTAGAAAAATGAGCAGTATCAATAAATATATTGTCTAAATTTTTTCTAGGAACTAGTTGACTAGCTATAAGATTAGCTTCAACTCTTTGATTGTTAGACTATGAAATTAAATTTAAAGGTTCATTCTTGGTCGTATAAATAGCTTTATCATTCGTATGTACTATAACAATTTTTGCCATCTGCTTTTGATAGATAAAGAGCTTTATCAGCTTTAGAAAATAAATCTTTATATAATTTAGTTGAATCATCAGTGAAGGCAATACCAATACTTAATGTTATTTTATGATTGTCCTTTACTTTTATTTTACTTGCATCATTTAA # Questionable array : NO Score: 6.00 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 61668-61116 **** Predicted by CRISPRDetect 2.4 *** >NZ_OFAA01000066.1 Clostridioides difficile strain R 9385 isolate R 9385, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 61667 29 100.0 36 ............................. TTTTTATAGGTATAGAATTAAGACATTTTTGTCTAA 61602 29 100.0 36 ............................. CTAAACTATTCAGAAATTAATGCTCAATTTGTAGGG 61537 29 100.0 36 ............................. GAAGTAAAATTATGTTGTGAAAGTATAGCAAATCAA 61472 29 100.0 37 ............................. TATAGAACGTTACTATTTCAGTCTCTTTGCTTTGCAA 61406 29 100.0 36 ............................. ACGACATATAAATTTTCTGTTTGACCTGGTACATAA 61341 29 100.0 36 ............................. ATTAGCCACTTTAGCATACTTGTAAGCGAGTTTAGA 61276 29 100.0 37 ............................. TTAATTTGTTCAAAATAAACATTAGATTTTTCTAAAT 61210 29 100.0 37 ............................. ATTTTCAAATTCTTCGTAATCATTTACGTAGTAAATT 61144 29 89.7 0 .......................GC.G.. | ========== ====== ====== ====== ============================= ===================================== ================== 9 29 98.9 36 GTTTAAATTACACTAAGTTAGTTATAAAT # Left flank : TAAATTAAACTATATTAGTTATAAAATGCCATGCTTATATTATGTGTTTGAATTAAACTAAATTAGTTGAGATATTAAGAATTAAAATGTTAATATAAGTAAGTTATATTAAAATATATAAAAATCATATGATAATATTTATATATTTTAGATAATGAAAAAACTAATTAAGGACATAGACATGTTTTTAATAGTTTGTATTTTGAGTATAAAAAGATATTGATTGTTTAATTGATATCTTTTTATGTTGATGTATTATATCAAAATGTATGTAATAATTCTATTTAGATATGTTTTTAAATTTATTATGTTTTAAAAATAATATTTAGTAGTTTTGGTTTTGCAGTGAGCGAAAAAATTGCATAAGTGGCTGTAAATTAGTGATGGCAAAGATTACAACTGTATTTTTGATTATACCAAAAAACACTACTTAGCGCTCACTGCAAATTATTCATTTTAATAATACTATAAGTATTGGAATTACTGTAGTTTTATTTGGG # Right flank : ATACCAGAAAGTATATATAAAATTATGTGTAAACTATATTGTTATGAGTACAAATAATATTTACCTATTCATTAAAAAACTTAACTAAGAATTTGATTTATATTATTGAAGTATCAATAATTTTGGAAAGTAGAAAATTATACCCCAATAATACCCCAACTACAAAAATAAACAATAAAAAATAACCAAAAAAATTGCTTCAACAGCATGACCAAATAGCTATATATCTACATTTACAAAAACCAACAAAACAATCAAATAACCACTTATAGACTCCCCTCATCTCCAACATTGAAATCCACGAATACCTATATCCAATTGGATATAGGTATTTTTATACATTTTTAATTTAAATATTATTGATAAATACATTTAAAAAGTTTTAACCTAAAGTGAAGAATCTAAATAAAAATACAATATTAGGAGAGGTTATCATTACAATAACAGCTTGTGATGATGAAAAAGAAATACAAATCGTAATAAAAAATCAAGTTGATAAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAATTACACTAAGTTAGTTATAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [81.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 97204-95331 **** Predicted by CRISPRDetect 2.4 *** >NZ_OFAA01000020.1 Clostridioides difficile strain R 9385 isolate R 9385, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 97203 29 100.0 38 ............................. TATTCAATGTCAATGTAATACAATTTTGTTATTGTATC 97136 29 100.0 37 ............................. TTTTCTGCAAGTTCCTTATCCATTTCGCCTAGAGCAT 97070 29 100.0 37 ............................. AAGGTTTTTGATTCTTTTTTTACTTTTAGTATTCCTA 97004 29 100.0 38 ............................. TGAATTAATTATCGCACGATTTGGGAGAGATTTCAAGG 96937 29 100.0 38 ............................. ATCTTTAGGAAAGCATTATGGAGAGAGGTAAAAAACAA 96870 29 100.0 36 ............................. ACTGAATTAAAATATTTATTAGCAGGAGCAAGTTTT 96805 29 100.0 37 ............................. CACCTGCATATTGATATATATATTTATATAAGTATGC 96739 29 100.0 37 ............................. ATCATTTTATCACCTCTTTATATTTATTATAATATCA 96673 29 100.0 37 ............................. TGTAGTTAATCTTAAAGATACTATATACATTAATAAT 96607 29 100.0 37 ............................. TTTATTGCAGACATAAAATCGTTTATAGTTCCATGTT 96541 29 100.0 37 ............................. ATTTTATAGGGTTCTTATTTTTTCTAACAATTTTATA 96475 29 100.0 38 ............................. TATAAAACTTCTTGCATCTCTGCATTAAAAAAAGACTT 96408 29 100.0 37 ............................. TTTAGGAGCAACTGGTTCAACATCAAATCCAATAAAC 96342 29 100.0 36 ............................. CATAAAAGGGCTAATATAAAGAAAAATAAATTTTTA 96277 29 100.0 36 ............................. CGAAAATGGACTGTTTTATCTTTAGGAGTAGGTGAA 96212 29 100.0 36 ............................. AAGTAGATAAAATAAGTTTAATAGGAATAAGCCAAG 96147 29 100.0 37 ............................. ACTTTTTCACGACATTTTTTTATAAAAGGAGGTATTA 96081 29 100.0 35 ............................. ATTGCAAGTTTATTGTCATTAAATACTTGTTTCGC 96017 29 100.0 37 ............................. AAAAAGGGTTGCACAAAAAATGGGTTGCAAGAGTTGG 95951 29 100.0 37 ............................. TTAATAGGCAAATCATAAGGAGGATTATTCTCTCCAA 95885 29 100.0 37 ............................. GAAGATATTTCTGTAAAAATCAATAAAAGATTAAAAG 95819 29 100.0 38 ............................. AGATATTGTTTAAATTCTCTGACTAGGAAAATTGATGG 95752 29 100.0 38 ............................. GAGGAATATCTTTAACAGTAATCAAATTTTTAACCCTA 95685 29 100.0 39 ............................. AAGACTGTCTTAAATAAAAAGAAAACAGAGCCACAACAG 95617 29 100.0 34 ............................. GTTCATCACTAGCAAAATCAGCTACTACTCTACC 95554 29 100.0 37 ............................. AGGATAAAGAAAAGACTCACACAAGACACAGTGTCAG 95488 29 86.2 36 .........C............GA...G. AGAATATTAGCAATATCAACGAGTATTTAGAAACTT 95423 29 79.3 35 ............TA...CA....A....A TTGTAGAATAAACAATAGCATATACTAAAACATCC 95359 29 75.9 0 ACC.............A.CA...C..... | ========== ====== ====== ====== ============================= ======================================= ================== 29 29 98.0 37 GTTTTATATTAACTAAGTGGTATGTAAAT # Left flank : CATTTTATAAATGATGAAAGGTACAAAGTTTTAAAGGTGTGGTGGTAAGTATGTTTGTTATTGTTACTTATGATATTGTTGAAGCAAGGTCGTTAAATAGAATTAGAAGGATACTTAGAAAATATTTGACTTGGACGCAAAATTCTGTTTTTGAAGGCAATATTACTGATGGAAAGTTACATAAATGTATTTCTGAAATAGAAAATATTATTGATAATAGCGAGGATTCAATCTATGTTTATGAGATAAAAAATCCTAATTCAATTAAAAAGAAATGTTATGGGATTGATAAGTATTCTGATGAAATGTTTATATAGGTTTGCAGTGAGCGATATTTATGCTAAAATAGGTGTTAACAGTTGGAATATAAGGGATTGAAGGTGTATGATAACTGTTATCAATTGCACTACTGCTCGCTCACTGCAAATTTTGATGTTTTTATTGAATTATAATTGCTTGATTGAAGTATTTTCAATGTATTCAATTATACCTATTTTGGG # Right flank : AAAATACACTTACCTATAAACATTATAAAATCAATACAAAAATGAGGTGAAACAAAATTTATGATAAAGAAATTAAACAATAAAGACATAAATAAAATCATGGAAATATGGGAAAAAAGTACAATCAAAGCACATGACTTTATAAGTAAAGAATACTGGCAAAATAACTACAATACTGTTAAAAACGAATATATACCTATATCAGATACATTTGTATATGATGATGGAGATGAAATAAAAGGATTTATAAGCATAATAGATAAAAGCTTTATAGGAGCTTTATTTATAAAACCCAAATACTAAAATCTAGGTATCGGAGGTAAACTTTTAGATTATGCAACTAAAAAATATAAAAGTCTAAGTTTAGCAGTATATAAAGATAATAAAAAAGCAGTTGTGTTTTATAATAAAAAAGGTTTTAATATAGTAAAAGAACAAGTAAATGAAGATTCAGGATTTAAAGAATACCTAATGGAATATAGTAAATAATATGATTACAT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [17-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 5337-6024 **** Predicted by CRISPRDetect 2.4 *** >NZ_OFAA01000010.1 Clostridioides difficile strain R 9385 isolate R 9385, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 5337 29 100.0 37 ............................. TTGCAAAAGTAATCCATGTTCATTTTATTCTCATTTT 5403 29 100.0 36 ............................. TCACGACCACGCTCCTATCTTATTATTATAACATGA 5468 29 100.0 36 ............................. TCGCAATTAGGAACAGTTAAAACAACATGGTAAAGA 5533 29 100.0 36 ............................. AGTAGCATTACATGCAGTCTCTTAACCTTATGTAAC 5598 29 100.0 37 ............................. ATAGGAGAGCCTTCAGAACAATTCAAAGATGTAGATA 5664 29 100.0 37 ............................. CAATTATATTTAGAAGAAACTTCAGTAATAGTCATTG 5730 29 100.0 37 ............................. TCTTAATACAATCGAATAGATATAATAAGAAGCAACA 5796 29 100.0 38 ............................. TTGTTTGAATATGAATATAAACATAGAAAACTCAATAA 5863 29 100.0 38 ............................. TCTCAACAACTTCTCTAGTTTTATTATAAATACGAAAG 5930 29 100.0 37 ............................. CCTATCATTGACAAATACATTGTTCGTTGTTCTTCTG 5996 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 11 29 100.0 37 GTTTTATATTAACTATATGGAATGTAAAT # Left flank : GGAGTTCATGTATCAAAAAATTATCCTCCCGACGTTAAGAAGGGAGGTGAATATACATGGATAATTTTTTACAAGGCATACTAGCAAGTCTATCTGCTAGCTTAATAGTTTATATAGCTAGCAAACTATTTAGAAAGCGTAAAAAACCACTCAAAGCGGCAACTAAGAGTGGTTGGGAATTTGATTTAAAAATCAGATTCCATAAAACTAAGTAATTTCTAAATTATGAACTCCACTCTACAGCAAAATAGATTGTAGTTCTTCTTGCTTTTATTATATCACAAATTGGTACAGATATTCAAAAATAATATTTTTATGATATAATAAAGTCATAGAAATTTTGCAGTGTTCGATTTTTTGAAGAAATTAAGGCTTAACAGTTGAAATATAAGGCATTGAGGACTTGTGATAAGTGTTATCAATTGCACTACCCATGGTTCACTGCAAATTTGAGAGATTTGTATATGTGTAGGCATTGGAAATACTCAATTTATTTTGGG # Right flank : TTGTATCCAAAAAATTACAATAATCATACGAACTGCTAATATAAGCAGTCAATATATGTGTACATTTATCCATTTTATCTCTAAACATATAAATTATTATCCCCCTAAAAAACTTTCATAAAAACAAAAAGAACAATATCTCTTTGGCAACTGGCTGACATAACTCATAAGATATTTATATAAGTCTTAGTCCCTATAGCTTTGCGTCACTAGATTTCTCTAGTTTTGCCGATTTAGTTTTATTCTATAACTAAATAATACAATAGAATTAGTTATTATTCAACAAGATTGTTTGAAAATTGAATAAATTTATAGGTATGAACGTAATTTCACACTTAAAAAACAGACTAAATACGTAGAATATATAGAAAAATTTACCTGTAGTTTTTGTGATAAAAAGCTCCTATTATTAATTTAAGCTAGATAAGTTTGAGGAAGTGACATAAATTGAAAGAAGGAATATATTATGTTGAATAAAAAATTACCAGATGCAGAATTAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 21593-20912 **** Predicted by CRISPRDetect 2.4 *** >NZ_OFAA01000092.1 Clostridioides difficile strain R 9385 isolate R 9385, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 21592 29 82.8 36 AGA............A............T ACATATATTAATGTCTTTTCCAGCCGATTTTATACC 21527 29 96.6 37 ...............A............. CTTATTAAATGATGTGCAGTTTGGCTTACATTTCCAA 21461 29 89.7 36 A..............A....C........ TTGAAAGATAAAGGAATAAAAGCTACTACTATAAAG 21396 29 96.6 36 A............................ GTTTCTTAAGATAATATTATCAAATCCATCTTTAGT 21331 29 100.0 36 ............................. AGCTCTTTTGAGATAAACAGTAAAGCAATAGTAAAT 21266 29 100.0 38 ............................. AAAGTGTAAGGCATTTTTTCAAACTGAGCATTTGTTTC 21199 29 93.1 34 ...........................GT TTAAATGATGCAGCAAAAGGTGCAAAAGACACAG 21136 29 89.7 36 A..............A............T TAAATCATCAAGCCCAAGTTTTTTCTTTGCATCTTC 21071 29 93.1 37 A...........................T ACAGCTCCCAAGACATACAACGAATCTGTAACATCAG 21005 29 100.0 37 ............................. ATATCTACATCAAGATAATCGGCGATGCTTTGTATTA 20939 28 86.2 0 A...................-..T....A | ========== ====== ====== ====== ============================= ====================================== ================== 11 29 93.4 36 GTTTTATATTAACTATGTGGTATGTAAAG # Left flank : CTTTTGTGGCAGTTTGTGAGATTATTAAGAAATTAGATATTAAAGAAGAAGAAAAACTCATAGTATTAGCAAATAAGGATAATTGGAATGGAACTACAACAAAGTATTCACAAAGTGTAATAGATAAAATAAGAAATTGGATAGAGGAGAATAATAGACCTGTTAAAATTGCAGGTGAGAAAAAGAATTTCCATGTTGTATATAAAATTGAGTAAATTCTATTGTATTAAATAATATATTTTAGTTTAGTTTTGAGGGGGATTAATACAATGTATGAGAATTTACTTGATATGGATAGGATAGAACTTATTAAAGAACTTGGAAGTATCTTTGAAAAGATGAAAAATGAAAATCCAGAAAGATTTTATAGATTTGTAAATTTAGTGAAAGAAGAAGGTAGGAAAAAGAAAAGAAAGAGAATAAATAATATAGATAAAGCACTTGGATATTATGTTATTTCAAGTGCTTTATATGTTAAAAAATGGTATAATGGAAATAGA # Right flank : TCAAAATACTAAAAACACTTACTTGAATAGTAGGTGTTTTTTTATTGAAAGGATGTGATTATAATGTAAAAATTTTACTGATATAGTATAATAATCTTATAAAATTATTGTACTAGGGGGATTTGTTATGTTTTGTTCAAACTGTGGTTATGAGATAACTGGTGCAGGAAAATTTTGTTCAAACTGTGGAACACCTGTATTAGTAAATACAGTTAACAATGATGATTTCTTTATAAATATTCATGGAAAAGAATTAAATCTGACTAATATTTATAAAGAAACTAAAGGAGATAAAATTTTAGCGATTGATGTTGTAATGAGGCTACTAGAGCTAGACATAAAAGAGTGTAAAAATATTATATATCCAGCTTTTAAAGAATTAAAAGAGTTAAGTGAAAAAATAAATATTGAAGAAGAAAAAGACGAATTAAGGGAAGATAACTATAAAAAATTTAATGAATTTGAGAATGATAATGTAGCACGTTGCCCCAAATGTGGTT # Questionable array : NO Score: 5.38 # Score Detail : 1:0, 2:3, 3:0, 4:0.67, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.45, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGGTATGTAAAG # Alternate repeat : TTTTATATTAACTAAGTGGTATGTAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:81.48%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [3-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.5 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 23643-23145 **** Predicted by CRISPRDetect 2.4 *** >NZ_OFAA01000092.1 Clostridioides difficile strain R 9385 isolate R 9385, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================ ================== 23642 29 100.0 38 ............................. TTAAAAATACCTATTTCGTTTCAAAGGTATAATGGAGA 23575 29 100.0 38 ............................. CTTTGGGAATCTATGCAAAACATAAAGAATAAATTTCC 23508 29 100.0 44 ............................. AACACAATAACACAATAATGCAAGAACTTATAAAAGAGTTAAAA 23435 29 100.0 36 ............................. TTTGTTTATCTTTAATTATATTATAGTCTTAAAAGA 23370 29 100.0 37 ............................. TGACAAACAGATTTTGATTCAATGGCTAAAAAGACAG 23304 29 100.0 37 ............................. AATTTAGTATCTGGATATGATGAAGAAGGCAATCCAA 23238 29 100.0 37 ............................. ATAAATGTATTTCATACAGGAATATTTTTCTGCAACA 23172 28 72.4 0 ......T......A..G.A..-.AA...C | ========== ====== ====== ====== ============================= ============================================ ================== 8 29 96.5 38 GTTTTAGATTAACTATATGGAATGTAAAT # Left flank : ATTATATGTTATAATGATTGTAGCAAGGATAATAATCGAAAGTGCGAAGGGTGATTATTTTCATATTAAACGCCAAATTCCAAATAAGGAAGGAGGTGAAATTATATGATAGGTTTTTTATTAAGCATACTAGCTGGTGTTATATCAGCTTATATTTATGACAAAATAAAAAATCACCCAGACGCCAATAAGGGTGATTTAAAAAAATAATATTTTCACTTAACAACTGAAAATAATCACTCTTTGTAGGAGTAAATTATTTCATTGCTTTTATTATACCACAAATTGGTACAGATATTCAAAAATAATATTTTTATGATATAATAAAAATGTAGAGATTTTGCAGTGAGCAATATTTGCGATAAATTGAAGTTTAACAATTGCAATACAAGGCATTGAGGGTGTGTGATAAATGTTATCAATTGCATTACTCACGGTTCACTGCAAATTTGAGAGAGGTGTGTATGTGTAGATATTGGAAATACTAAGTTTATTTTGGG # Right flank : TAAATAAACATAGAAAGCACTTACAAATATGTAGGTGCTTTTGTTTTGCTCAAATTGGTCGGTTGAGTAAAATAATTAGAAAAAATTGGGATAAGTTATTGACTTTTGAGTTCCAAAACTATATAATTTAATTATGGAACTCAAAAGTGAGGTGATAACATGAGTCCTAAAAAAATAGGAAGACCTGTTGTAGGAAGCCCTAAAACTAATGATATTAAGGTTAGAGTAGATGATGAAACTAATGAAAAATTAGATGAATACTGTAAAAAAAATAACCTTACAAAAGCAGAGGCTATAAGACAGGGAATCCATTTACTTTTAGAGAAATAACAAAATAGAGCATTCTCCCCGACCAAAGATTGAATGCTCTATTTCCAACAAAGAAGTTAGCACTTCTATATGAAATATTTTATCATATAGAGAAACTTCTTTCAAATTAAATTTAGGAGGAGTATGTATGATGAATGATTTACAAATATTTAAAAATGAAGATTTTGGAG # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 116245-117198 **** Predicted by CRISPRDetect 2.4 *** >NZ_OFAA01000084.1 Clostridioides difficile strain R 9385 isolate R 9385, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 116245 29 100.0 38 ............................. TTAGATGTCAACATAGTTGTAGCAGCGAAAATTTTAGA 116312 29 100.0 38 ............................. TTAGATTGAGATTCTCCAGCCCAAACCTTTCCATGAGC 116379 29 100.0 36 ............................. ATAATGATATGAAACTGAGTTCTGAGGGGTGTTTGA 116444 29 100.0 38 ............................. TATTAAGAGATTATATAAAAGACACTTAATAGCTCAAG 116511 29 100.0 37 ............................. ATAAGAGTAGTTTAAAAAAGTAATTAATTTTTAATCT 116577 29 100.0 38 ............................. TATACTCGTCAACAGTATTACATAAAATAACTTTTAGT 116644 29 100.0 38 ............................. CTGTTTGTCCAGATGTTTTACCATCTCTAAATACATAT 116711 29 100.0 34 ............................. GCGATTTGATTAAAGTTCCTGGGGAAGATGTTTT 116774 29 100.0 36 ............................. TTTTAAGTATGTTATAATACATTCGCTTTAGTTTGT 116839 29 100.0 37 ............................. TATTTGATTTAAGGCTAGACTACAATAAATTAATTGA 116905 29 100.0 37 ............................. ATAGCTACTATCTAAATCCTTTTTAAACAATGATTTT 116971 29 100.0 39 ............................. TTAAGATACTTTTTTTAACTCCATCAACCTCGACTTCTC 117039 29 100.0 37 ............................. AGTCAAAACTCAACACTTCAACATTAGGATTATTATA 117105 29 100.0 36 ............................. AACAAAAAAGATACATCTGTAACTAATTTTTATACT 117170 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ======================================= ================== 15 29 99.8 37 GTTTTATATTAACTAAGTGGTATGTAAAG # Left flank : CTATTAACTTATGAAATATCTGTAAATGAGTAGATATTTCATAAGTTAATATTTATTGTTTATATAAAATATTTGGTAAAAATAAGTAAGTTTTATATGTTATAATAATTGTAGCAAGAATAATAATCTAAAGTGGCAAGCATGTCAGCTGGTGTTATATCAGTTTATATTTATGATAAAATAAAAATCTCCCAAACGCCAATAAGGATGATTTAAAAAAATAATATTTTCACTTAAAAATAATCACTCTTTATAGGAGTAAATTATTTTCTTGATTTTATTGTACTACAAATTGGTACAGATATTTAAAAATAATATATTCATAATATTATAAATAGTTTTGCAGTGAGCGATATTTTTGATAAAATAGGGCTTAACAGTTGAAACATAAGGCATTGAGGGTATATGATAAATATTATCATTTGCACTATTCGTGGTTCACTGCAAATTTGAGAGAATTGTATAGATGTAAGTGTTGGAAATACTCAATTTATTTTGGG # Right flank : GACAGATATAATGTCAAAATAAGGTTAGGACTTTTAAAAGCATAGCCATATCAGTAAAAATTTAATTATCATTTAAAAAATAAATTTTTATTTAAAGAATACACATAAATATTTCCAGACTCAACTCTCTTAAACTATTTTCATATCTTTTAGTAGATACCTTTGTTGTTTTTTAACCTTTAGCAACTTGTTCTTGAGTGAACCTCTTATTTTTTCTAAGTTATTTCAAGCTTTTCAAAAAATTCTCTATTTATATTCATCACACATATAATACAATCAATTCAGTTTTAATTGCCAATATTTAGTTTTTCTGTATCTGATAAACCAAGAATATAATCAGTATATAAACCAAAAATTTTAGCAAATATTATTAACCCATCGTCTCTTGTTGGTCTTTCACCAGACTCTATTCTATTCATAACACTTGTATTTATATTTGTTTTTTCAAGCAATTCTTTTTGAGAACTATTCATATTTTCCCTAGTATATTTAATTCTTTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 31496-33098 **** Predicted by CRISPRDetect 2.4 *** >NZ_OFAA01000073.1 Clostridioides difficile strain R 9385 isolate R 9385, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 31496 29 100.0 36 ............................. TTAGATGTCAACATAGTTGTAGCAGCGAAAATTTTA 31561 29 100.0 36 ............................. TTTTATATTTTTTCTTTTCTTATTATCTTGTTTATT 31626 29 100.0 37 ............................. TTTGGAATGACTGTACCGACTTTTCCCTCGAATGTCA 31692 29 100.0 37 ............................. ACATCAAGACTATCTATATTATTAAGAGTAACTTTAA 31758 29 100.0 38 ............................. ATCGCAGAAGGATTGCTTCCTGTTTTAAATGATTTAGC 31825 29 100.0 37 ............................. CTTTTAATATAGTTGCTTTTTCTATGTTTTTATTAAC 31891 29 100.0 37 ............................. AACTTCATTTCTCTTTGAATACCTTGTGGGTCAGTAT 31957 29 100.0 36 ............................. ATTTTGTTGGAGTTGCTGTTATATCTATTCTTCCTT 32022 29 100.0 38 ............................. CAAAAGAAGAGTTAAAAGGGGTAGGAATAGAAATAAAA 32089 29 100.0 37 ............................. AGTGTTATCTGCTAAAGTTTTTAAAAATGCACCTCTT 32155 29 100.0 36 ............................. TCAAAGCAGCCAACCACTAAAGCAACAACAAATTTT 32220 29 100.0 36 ............................. TTGAAACGAAATAGGTATTTTAAAAGGTTTTAATGT 32285 29 100.0 38 ............................. AGGGCATCAGTTTTAACTGAAGTAAGTGCAGTAGTCAT 32352 29 100.0 36 ............................. CTTTTTATTTTCAAAATCATAGCCTCTGTATTCAAT 32417 29 100.0 37 ............................. TACTCCATTCCAAATGAGTATGTATGAAGAAATAACT 32483 29 100.0 37 ............................. AAACCAAAAGGGTATTCAGTGTTAGTAAAATCTAATA 32549 29 100.0 37 ............................. TTTGGATTCTCTTAATTGGAATAAATTTTGCTTATAA 32615 29 100.0 36 ............................. GGAACATAAACATCTAATCCAGAATTTGGAATAACT 32680 29 100.0 37 ............................. TGTACCAGTTGCCATTTTACTTCACCTCTCTTTCTAA 32746 29 100.0 36 ............................. CGATTCAAGCGACTTTAATTATGAAGTTGATATGAA 32811 29 100.0 33 ............................. CTTTTATTGTTCCCCATATTCGCAAGTTTCCAA 32873 29 100.0 37 ............................. TTGTTATAGTAGCGACTTATTACAAAGTATTTTTCTG 32939 29 100.0 37 ............................. CTTATACTTAGTTAGAACTATATATCGACACAAATAT 33005 29 86.2 36 .C.............CA......A..... TGCAATTTTTATTCGTTGTCCAATCGCTTGAAATTT 33070 29 96.6 0 ...............C............. | ========== ====== ====== ====== ============================= ====================================== ================== 25 29 99.3 37 GTTTTATATTAACTATGTGGTATGTAAAT # Left flank : CTATTATTATATATAACTGACACTTAAGTGACATTTAAGAAAAATATAATGCTTACTTACATAAAATGGAATGTTATTTAAAGAGAACTTTGATTATATTTTCAAAAGCTTTTTTATCCATATCGTTTAAAACAAGAAAATATCTATTCATAGTTATTTTTATATTAGTATGTCCTAATCTTTCAGAGATGATTTTTATATTAGTTCCAGCTAGAAGAAGAATTATTAGAATAGATAATATAGTAAGTATTTACAAATATGTAGGTGTTCTTAAATTGATAAATTATTCCATTTTAATTTTATAGTTTGAATTTTATGATATAATAAAAATATATAAATTTTGCAGTGAGCGATATTTTTGATAAAGTAGGGTTTAACAGTTGCAATGTAAGGGATTGAGGGTGTATGATAAATGTTATCAATTGCACTACTCATGGTTCACTGCAAATTTGAGAGAGTTGTATGTGTGTAAGTACTGAAAATACTTAGTTTATTTTGGG # Right flank : TTTGCAACAAGTATAGGTAAAATACCCCAATAATTTATACAGCATTTTCTACTTTAAAATATAATTATTTTTTATCATTTGTAGTAAATAATTACCAGATAACATTGACTTTAGTTTTAATGATTAAAATATAAAAGTAGAATAATTATAAAAAGTATTGAAAAGTTTATAAATATATATAATAAAACTTAATGACAAGATATTAGATATAAAAAATAATTATCTTATAAATAGATTGAAATTTATGAATATTCATACTATAATTTAAATATAAAGAGATGCCCTTTAAAAATAAAAATTAAAAAATATTTAATGCTACTACAATAGGAACTAGAACTGCACTTAATAAATATACAGAAATTAGATTTGGCTCAATATAAAATACAAATATAGAATTTAGGTGTTTTTTATGAAAAAAATTTTATATGCTTTATATAGTTTCATTGTTATTATAGCTAATTTTAGATTAAAAGAAAAAAATTATAACTTTATTTTATTAG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 25058-24369 **** Predicted by CRISPRDetect 2.4 *** >NZ_OFAA01000078.1 Clostridioides difficile strain R 9385 isolate R 9385, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 25057 29 100.0 37 ............................. TATATTTGTTTCAAATACATTACATTTAGTTTTTATC 24991 29 100.0 38 ............................. TTTAATGTAGATATTTCGTCTCTATAACCTCGTCTCTT 24924 29 100.0 37 ............................. CCTGTTGACCCTCCAATAACTCCAGATGTTCCTGCTG 24858 29 100.0 37 ............................. TAACAGTAGAGTATAAACGTTGTTTGCTAGTTTTTAT 24792 29 100.0 37 ............................. AGGATAGAAACTCCGTGAAAGCGGAAGCTTTTTGCGC 24726 29 100.0 38 ............................. CTAAAACTAACATAAACATCACCCTGGTAGCGGTCATA 24659 29 100.0 38 ............................. ATTTCCAAAGACCTGACAGGAAAAGGGTCTATCAGAGC 24592 29 100.0 37 ............................. AAGACAAATAAAACATAATTTCTAACACTCTTTTCTT 24526 29 100.0 33 ............................. CCTACTTTATTTTGTCTTTTTTTATTACTATTT 24464 29 100.0 38 ............................. CCATCTTTTGTTGTTTTACATAAATTTATATTACTTAC 24397 29 86.2 0 ........C........CA........G. | ========== ====== ====== ====== ============================= ====================================== ================== 11 29 98.7 37 GTTTTATATTAACTATATGGAATGTAAAT # Left flank : GATAACCATAATAAAAATAGATATCTATTTTTAGATTAAAAATAATATATCATAAATAAAATAATAAGAGGTAGATACAGTTTTAAGGGAATACAAAAGTTTTTAATTAAACTATGCTTGTTCAGATAGATATTTATTTAAGAAAAAAGACTATTAAAAGCAATATATAAAAATGATATATTAGATTGATTAAACAAGTATAAATATTATGTAAAAAACTTTAAGTTATAGAATTTAAATCTAATGTAGATAGATTACGTTTTTTTGCTTTTATTATGGTATAAATTGGTATCAATATTCAAAAGTAATATATTTATGATATAATAAAATTATAGGAATTTTGCAGTGAGCGATATTTGTGAAAAAATTTGGCGTAACAGTTGAAATATAAGGTGTTGAGAGTGCATGATAAGCGTTATCAATTGCACTATTGCTCGTTCACTGCAAATTTAGGAGAGTTGTATACGTGTAAGTGTTGAAAATACTAAGTTTATTTTGGG # Right flank : TTTTATAATTTTCTTTTAATGTGTTATCTTATGATTATCTAGTTATATTAGCATACAAAAATATAATAAAATTACACTATATTATAAAAACCAAAAGGTAGTATAGAAATCCTATTACCTTTTTATTATTAATTTTATCAGTGTTTTATTATAAATAGCTTACATAATTACACATTTTTTCTGATTAAATAATATGATGCTATTGTTATAATAGATACTAATGCTAATGATGTTATTGCAGTATCTAATCTTCTTATTAATAAACTCATTTCTATATATTCAAGTTCTATTAAATATTGATAAAATATTTCTAGTTTAACAGCTTTTTCTCTATCTATATTTCCATACTTTAACTCTAATTTATCTAAAGATTTTTTATTACAATAATTAACTTTATGTTTAATTAAATATCTTATTGTAGTACCTATTACAATTTTCACTCTAACAAGTATAAATATAATATTCCATCCAAAAGTTAAGAGGGTATATCTTTTTTTATG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //