Array 1 1167622-1167138 **** Predicted by CRISPRDetect 2.4 *** >NZ_QKWX01000002.1 Streptomyces sp. AC1-42T contig2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 1167621 37 100.0 42 ..................................... CCGCATTGCGAGCGGCGATCTGCTTGCGCTTGGCGGTGGTGC 1167542 37 100.0 36 ..................................... CCGACCGGGGGAACTGAGCCACGTACCGCGTGCTGG 1167469 37 100.0 35 ..................................... GTGGCTCGACCCTAAGGTCGTGCCAGGGTTGTACT 1167397 37 100.0 36 ..................................... GGCCGAGGCCCCTAGGTTCTTCGCTTGCTGTACATG 1167324 37 100.0 38 ..................................... GTTCTCAGCGAGAAGCGCCCTCACCTCCGACTCCTTGT 1167249 37 100.0 38 ..................................... GCGGCCCTCTCGAAGTCGCCGAGCAGGGATTCCATCGC 1167174 37 89.2 0 .............A.................G..TT. | ========== ====== ====== ====== ===================================== ========================================== ================== 7 37 98.5 38 GTTCCGCAGGACCGAAAGGCCCGTAGGGCATAGAAAC # Left flank : GCTGGAACACGTACGCCGACGTAGCCCTCCCGGACGACCTGATCACCGAACTCCGCGAAGCCGTCCTCTTGTCCGCCCATGAGGTGAAGAGCGTCCCCGTCGAAATCGGCCATGGCCACCGCATCGGCTTCCTGGGCCACGCCACGTTCACTCTGCCCCGGGCGGCCGCCCCCGCCGTACGGACGACGTTCACAGCCCTCTCCCACTTCGCCGAACTCGCAGGCAGCGGCGCCCAGACCACCCATGGCCTGGGCTGGACGAACGTCACGACGACGGACCACCGCGAGCCGCCGGCGATCGGACGACCGCCCCGGCGGTAACGTGACCGCACCTCACACCAACAGCGCCCCGAGCCCGATTCCCGCGCGAGCCGAACGTGCGGGTCGCAGCCCTGCGGCGAGATCTTGTGACCCATATCACAGATCGGGCCACCCGCTGGCGGCAAGTCCTGCGCAACGGGCAGAATCCCAGCAGGTCACAGGCCCCGGCTGAGGCAAAGG # Right flank : CTCGTTCACTCGAAGGGAATTTCATGGCTGAGCTTCTTCACCGCGCCGCTTCGGAGTCCGCGTTGCTTGCAGCCTGGGGCGAGGTCCAGGAGAACGATCTGGCGGACGGAAAGGTGAGCAAACAGGTCGCCGACTACGCGAAGGGCGTGCTCGGTCGACTGGCGGCGCTCAGCCGCGCGCTTCGGGCCGGTACGTGGAATCCGTCGCCCGTCTACGCCATGGAGATCGACAAGAGATCTGGCGGAAAGCGCCTCCTGGCTGTTCCTGCCGTCGAGGACCGCGTCGTCGAGCGCGCACTCATGGAGGTCGTCGACGACCACATCGACGCCGTGCTGCTCCCCTGGAGCTACGCCTACCGCAAGGGCCTCTCGGTGTCCGACGCCTTGGACGACCTCGCAGCCGCGCGCGACGACGGTGCGCGCTGGGTCGTCCGGGCCGACATCAAGGATTGCTTCGAGCGGGTGCCTCGCTGGCCGGCGCTGACGCGGCTGCGTGAGCTC # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCGCAGGACCGAAAGGCCCGTAGGGCATAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 140442-140005 **** Predicted by CRISPRDetect 2.4 *** >NZ_QKWX01000003.1 Streptomyces sp. AC1-42T contig3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================== ================== 140441 29 100.0 32 ............................. GACGTGGCCCCGGCCGGGCCCATCTTCATGGA 140380 29 93.1 32 ..........................TT. GCCACTGTAACGGATCAGACCCGCTCAGCCCA 140319 29 100.0 32 ............................. TCGGCAGCGTCCTCGCCGTCGAAGAGCGCATC 140258 29 100.0 32 ............................. GCCGAGGCCGCCCGCGAGCTTGCCGAGCTCAA 140197 29 100.0 32 ............................. GAGTTCGGGAGGTACAGCTCGGGGAAGAGCTG 140136 29 96.6 72 .............A............... TCCACCGACGGCTACCGCTGGACGATGCTCGGCTGCTCCCCGCTGCCGGCGCGGCGCCCGCAAGCCCGCTCG 140035 29 93.1 0 .............T........C...... | AT [140024] ========== ====== ====== ====== ============================= ======================================================================== ================== 7 29 97.5 39 CTGCTCCCCGCGCCCGCGGGGATGGTCCC # Left flank : TCCGGGGATCGACTTCTACTGGACCCGCGACGAGACCTGGAACCCGCTCTTCGCCCTGGAAGTGAGCCAGGCCGGCACGTACGAGGTCACCTGTGAGTCCAAGGGGCCGTCACAATACGCAGTCGGGGAATCCGGTGGATTCGTTGAGTTCATGCGCGGCTCGGTTCTGGCGATCGTGCTCCCGATGTGCGGGTTCGGCATCGGCCTGACCATCGTGATCGTCGTCGCCGTCCGCCGCAGCGACCACCGCAAGCGCCTCCGCGCCGAACGCTACGGCCCCGGCCCCGGCGATGCGCGCCACACCGCAGCCTGAACGAGCGGAGGCCCACGGGGTGGGCGCCGAGTTGGCACCGAAACGCTTCCCGCGCGACGATGCAACGACGGAGCCGTGACTCGGCCTACCTGAAATACCCACTGTGAGGACTTTGACCGCTATGCCGGTTCCAGCGAAAGTGGTCAAAAACCGGGTCCCCACGATACAAACAAGCAGGTCACGCACT # Right flank : AGCGCCCCAACAGGGCTACCCAGCAAGCCGCTCCCCGCGCTTCCAGCCCCCGGTAACAGGCCCGTCCACCCCGCCCCAACTCCCGTTGGCCGCCGTCCGTCGTACCGCCCCGCTACCGTGGTGCCGTATGAGCGATACGCACACGCATGCACCCGTCGACATCACCGCCGACCTGATTCGCGATCTTCTCCGTGACCAGCATCCCGATCTCGCCGGGCTTCCGCTGAGCCTCGGTGCGCGGGGGTGGGACAACCAGTTGTGGCGGTTGGGGGACGAGCTGGCCGTGCGGTTGCCGTGGGCGACGGCGGGGGCGGATGAGTTGCTGCTCAAGGAGCATGCGTGGGTGCCCCGTCTCGCCCCGGACCTTCCGCTGCCGGTTCCCGTGCCGCAGCGCCTGGGCGTGCCGTCCGAGCGGTTTCCGCGGAGCTGGCTGGTCACCACCTGGGTGCCGGGCGAACCCGGTGACCGGGTTCCGGTGACGCGGGGCGAGGAGGCGGCCG # Questionable array : NO Score: 5.66 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:-0.47, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 150388-150176 **** Predicted by CRISPRDetect 2.4 *** >NZ_QKWX01000003.1 Streptomyces sp. AC1-42T contig3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 150387 29 100.0 32 ............................. ATGCCGGTGTGGACCAACAGGGCCCAGTCCTC 150326 29 100.0 32 ............................. TCGTCCAGGAGAAGGGCAAAGGCCTGTACTTC 150265 29 100.0 32 ............................. TCCGGCTGGAGGGTCAACGACCTCGCGCCGGT 150204 29 96.6 0 .........................C... | ========== ====== ====== ====== ============================= ================================ ================== 4 29 99.2 32 GTGCTCCCCGCACACGCGGGGATGGTCCC # Left flank : CGTACTCCCGGTCGAACAGGGACGCGTCGTCGGGGAGGACGCCGACACGGTGGAGGTAGTCGGCGACCCGGCCGCGCTGGTGAAGGTGACCTCGGCGATGCCGTTCCGGGTGTAGTAGTGGACGTCGGACGCGCCGACGGGTATCGGCGCGTCTCCGGCAGGGATGACCTGGGGAAGCCGCGTCTGACTGCCGTCGCACGCACGGGAGTCCCCGAAGGGGTGGAACAACCGGTCCTGGAACAACCAGCCGAAGCCCCCACCGCCGAGCCCCTTGCGGTGCGCCAAACATGAACTTCTCCTTCGAACATGATCGGACAGGCCACCGCAGCCTAGGCTGACGGAGAGACGTTGGTTCAACGGCCGCGTCACGATGGAGGACCCGAACGGTGAGCGGGTTGGCCTGGTATGCATAGGAGCAAGATGATGGGCCTGATATGCCGGAGTCCGTGAAAGTGGTCAGTTTCCACGCAACACTGAGATAAAAGCGCAGGTCACGAAGA # Right flank : GTGTCCCGGAGGCCTTTGGCGTGAGCGGGGTCACACGTCTCGGGGCGTCGGCTGCTTGCAGACAGAGAGGAATACCTGCCATGCCGGCCCGGAGAACTCCAGAGGGTGCCGGGAGAGGTCCTTGGAGTCTCGGACGTGCACGGTGGACGCAGCTGCTCGGGCCTCCACACAAGCGTCCTCGAAGTCGCTGCTGTAGGTGCTCTTGCGCCATCCGCTGGGCGACAGTGCCATGGGGGGCCTCCCGGGTATGGGGAATGTGGCAGACCGCTCACTGCCACGTGGAAGTGTAGGACCCATGGCCTGAGCCCAAGGGAGAAATGATGCCAGGCAAGGCTCGGCAGACAGTCGCCGAGATGGACGCCACGAGCAGGCCCGCGCTCTGCTCAACGCGCTGATCTCCGCGTACAGCGCCCGAATAGGGGCAGCGCCGACCCGGGAGGCCGCCCAGGAGCTGCGGGCGGAGCGCGCCCCTTCCGGCCGAGCGGGACAGCCTGTCCGCC # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCACACGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 826132-832789 **** Predicted by CRISPRDetect 2.4 *** >NZ_QKWX01000001.1 Streptomyces sp. AC1-42T contig1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 826132 28 100.0 33 ............................ GCGGCGCAGCAGATCCGCGAGCAGCAGGATCGG 826193 28 100.0 33 ............................ CCAGGAGGTCGCGAGCTGGACGACGAACCCCTC 826254 28 100.0 33 ............................ CTCCACGACACGGTCCTCCGCCGTCGAGGCACG 826315 28 100.0 33 ............................ CACGTAGCCCCGAGCAGGATCGCGGGTGACGGT 826376 28 100.0 33 ............................ CGCCAGGCCGCGCGGCGTCAGGTGCAGCGTGTA 826437 28 100.0 33 ............................ CGCCTGCCGCCCCTCGATCTACACCAGCAACCT 826498 28 100.0 33 ............................ CGTGAGGACCGCGAGCGTGCGGCGCGTGAGGCC 826559 28 100.0 33 ............................ CCGCTCCAGGCGCAGCGGGCCCTCGCCCTCGGC 826620 28 100.0 33 ............................ CTTTTCCGGGACCAGCCCGGAGGTCTTGGCCGC 826681 28 100.0 33 ............................ CGCCACCCCGGCAGAGATCAGGGAGGCGACCCG 826742 28 100.0 33 ............................ CCTGGAGAGCCACTTCGGCCTCGGGTACAACGG 826803 28 100.0 33 ............................ CGAGCTCACGAAGACCGGCGGGTTCGAGCAGCG 826864 28 100.0 33 ............................ CTGACCGAGGGCGCCGTTGTACCCGAGGCCGAA 826925 28 100.0 33 ............................ CTTCGCGCAGGACGCGGGCCGGGTCGTGGCGGG 826986 28 100.0 33 ............................ GAGGACTACCAGTACGACGACATGGACGAGGAG 827047 28 100.0 33 ............................ TGCCGCTGTGGGGGGACGGGGGTAGTCGCTGTG 827108 28 100.0 33 ............................ GGCGGATGCGTCGTCTTCCTCCTCTTCGTGCTC 827169 28 100.0 33 ............................ CGCGGTCCAGGAGGACGCCTCGCTCCTGGGCCC 827230 28 100.0 33 ............................ CGCCCTGGCGGCCAGGGCCAGGTCCGATGTCGC 827291 28 100.0 33 ............................ TTCCTGGTTGCCCGCCTGCAGCGCGAGCACGGC 827352 28 100.0 33 ............................ CTGGAGGCGGGCTACACGGTGTCGCAGGCCGCG 827413 28 100.0 33 ............................ CGACGGCCCTCGCCGTCGTCAAGGGTCGGTCAG 827474 28 100.0 33 ............................ GATGGGCGTCACCGCCCACGGCCCCATCTGCGG 827535 28 100.0 33 ............................ CGATGACCGCCAGCGCATTCACGATGCGGCCCT 827596 28 100.0 33 ............................ GTCGGCGTGGTCGGCTTCTGCCGCTGCGACGAC 827657 28 100.0 33 ............................ CCGCGAGCACGACCAGGACGACGGCGAGCCCGG 827718 28 100.0 33 ............................ GTCCTACTTCGGCACCAACTTGCTCGGAGTGTC 827779 28 100.0 33 ............................ ACCGGGCCTGCCGGTGGGGCTGTTTCTCCGGAC 827840 28 100.0 33 ............................ CCCAAGGCGCGTACAGTCCGCTTGATCGCGGAA 827901 28 100.0 33 ............................ CTCGGCCTTGGCCACGGATCGGCTCTTAGTGGC 827962 28 100.0 33 ............................ CTCGGCCTTGGCCACGGATCGGCTCTTAGTGGC 828023 28 100.0 33 ............................ TCCATCACGTGGCCTTCACCCTGCCCCCACGCG 828084 28 100.0 33 ............................ CCCCGAGCCCGAGAACACCGCCCCCCGCCGCCC 828145 28 100.0 33 ............................ TGCCTTCTGCCTGGCCGCGTTCGCCTGCCGCTC 828206 28 100.0 33 ............................ CGCGGCCGGGTGCCGCCCAGCCTCGGGCCCGGT 828267 28 100.0 33 ............................ TCGGCGATTTTGGCCCTGGTAGACAGCCACGCG 828328 28 100.0 33 ............................ CGTGGTCGGCGGTTTCGTGAGGAGCAGGCGCCA 828389 28 100.0 34 ............................ GCCCAAGCGCGGGTCCGGCGAGAAGTGGGACCCG 828451 28 100.0 33 ............................ GCCGGACCAGGACGAGGTCTTCTCGACTCCGAT 828512 28 100.0 33 ............................ GATACCCCTGCCTCATAGGCGACTACATGCCGG 828573 28 100.0 33 ............................ TAGAGGTGGCCGGCGACCTAGTCCACTAGGCCG 828634 28 100.0 33 ............................ GGACGCACGGCGGTGATTCCGTGCGCCCGATGT 828695 28 100.0 33 ............................ CACCCTGATTCCGTTCCGCAACGGAATCATTCA 828756 28 100.0 33 ............................ GTCTTCGGCGACAGTGGGGAGTCCTCGTGTCCG 828817 28 100.0 33 ............................ CTGCTTCACGCGCGTGTCTCCGGGACACGAGTG 828878 28 100.0 33 ............................ GCCGCTGGAGACCGCGCGGGATGCGGAGGACCT 828939 28 100.0 33 ............................ TCTGCGATGGACCACGTGCTCGCGGGCCCGAGC 829000 28 100.0 33 ............................ GGCAGCCCGGTACGGCATCAGCTCGGGGCAGTG 829061 28 100.0 33 ............................ GACCGTTCGTTGGACTCCATGTCCCAGGCCCAC 829122 28 100.0 33 ............................ CCCCGACCGGCGGCACGTACACGCTGTCCTACT 829183 28 100.0 33 ............................ GGCCCAGGCCGGGTTCGTCTTCACGCCCATCAA 829244 28 100.0 33 ............................ GGCAGCCCGGTACGGCATCAGCTCGGGGCAGTG 829305 28 100.0 33 ............................ TCGTGCTGACGGCTGACCTCGGCGTGGCCGTGG 829366 28 100.0 33 ............................ AGGCGATCACGAAGGTAACCACCCTGCCCGGCG 829427 28 100.0 33 ............................ CACACGGAGACGGGGTGATCGCCGATGCCCCGC 829488 28 100.0 33 ............................ CCTCGTCTACGTCCGCGCTGAGCTGCGCGCCAT 829549 28 100.0 33 ............................ CACGACGTGGCCCAGCTGATCGTCGTGTTCCGG 829610 28 100.0 33 ............................ TCGACCTGGGCACGCTGGAGGCCGGCAACAAGT 829671 28 100.0 33 ............................ TGCCCAGTGGGACACCTCGCCTGCCATCTTCCG 829732 28 100.0 33 ............................ TCACGACCGGCGGTGGCGGCCGCGCTCGCGCAA 829793 28 100.0 33 ............................ CGCCCCGATCCGGATCAGCCAGGCGGTCATCCC 829854 28 100.0 33 ............................ CTCGCCGCCCTCGCCGCCCTGTGGGCCACCGTC 829915 28 100.0 33 ............................ CGCGGTCCGCTCATCGCCGAGGTGGGCCGCGCG 829976 28 100.0 33 ............................ CTCGGCGGTGCCGCCGCAGATGGGGCCGTGGGC 830037 28 100.0 33 ............................ CGTGAGGAACAGCTGCTCGTACGCAGTCAGCTG 830098 28 100.0 33 ............................ CGGCACCAGCGACGCCGCGTAAATCGCGACAGC 830159 28 100.0 33 ............................ GGAGCTGGAGCCGAAGGCACTGGCCCACGACAC 830220 28 100.0 33 ............................ TCCGTACGGGTGGTGGCGGGTGCCACCGCTCCT 830281 28 100.0 33 ............................ CCGCCGCCGCCCGGACGACCGGGCGGCGGCCCC 830342 28 100.0 33 ............................ GGCGGCCATGCCTGCGTATCCGGCAAGGAGGGC 830403 28 100.0 33 ............................ GGGCGTCCCGCTCACGACGGGCACCGTGACCAG 830464 28 100.0 33 ............................ CTCTTCCAGATCGCTGGGGGTACAGAGGTGGGC 830525 28 100.0 33 ............................ CACCCTCCTGGACCTGCTGACCGAGGCCGCCGA 830586 28 100.0 33 ............................ CGTGGTGGTGGCTGCCCCGTTGGGGGTGAGCCG 830647 28 100.0 33 ............................ GGCCAGGCACGGCCCGGCCCTGGATCTCGGCGT 830708 28 100.0 33 ............................ GTCGCGGATGCCCCTCACTCTCGCCCCCGTCGC 830769 28 100.0 33 ............................ CGCGCTGCTGCAGCTGGTCGCGCCGTACGCCCA 830830 28 100.0 33 ............................ CCCGCGCTGGGTCGAGGCGAGGCGCAGCGTCCA 830891 28 100.0 33 ............................ CGCGGTCTGGCTCGCCAGGCTGGAAGCCGCCGG 830952 28 100.0 33 ............................ CGCCGCGCCGATCGTGGCCAGTGCGGGCGACAG 831013 28 100.0 33 ............................ GGTCGCGCTGCTGTCCGACCGGGCGTTCCGGCT 831074 28 100.0 33 ............................ GCACCGGCGCCCGCCGAGGACACGCGAGCCCGA 831135 28 100.0 33 ............................ CGCATCATCCACGGCGGTGCCCCCGGCCAGGGC 831196 28 100.0 33 ............................ CGGGGCCAGGTCCCGGCGCATCGGTGACGCCTG 831257 28 100.0 33 ............................ GTCCGACAGCTCGGGCCAGAGCTGGTCGCCGTG 831318 28 100.0 33 ............................ CGTGATTTTCCCCGGCATCGTCGCCCGCGCGAC 831379 28 100.0 33 ............................ GGTGTCGGCCAGCGTCGACAGCGAGTACGGCGC 831440 28 100.0 33 ............................ CCCCCGCGCCGCTGTCACGGCCGGGGGTGTGGA 831501 28 100.0 33 ............................ CAAGCGGTGCACCGAGGTCACCGGGGTCCGCGG 831562 28 100.0 33 ............................ GGCCGCCGCCGCGAAGGCCCGCGCCCGGTCCCT 831623 28 100.0 33 ............................ CCGGACGTGGGTGTCCGCACTGGGCTGCTCGGT 831684 28 100.0 33 ............................ CGCGCCCTCACCGCCGCATCCCCCGCCGCGGAA 831745 28 100.0 33 ............................ CTGCGCCCCGACATTGTCGAGCTGCTGCGCGCG 831806 28 100.0 33 ............................ CGGCCGGGCGATGACGGCGGTGTCCGGTGACTG 831867 28 100.0 33 ............................ CGTCGACCACCTCATCCGCCGCAACATCACAGA 831928 28 100.0 33 ............................ CGCGCCGGCCGCGTCTGGCTGGACACCCCGGCC 831989 28 100.0 33 ............................ CCCACCGCCCACCCCGACCTCGACCCCGACGAC 832050 28 100.0 33 ............................ GTCGGGGGCGCTTGGCGGTTCACCGCAGCCCAG 832111 28 100.0 33 ............................ CCTCTTGGCCGGAACCTCCTACGTGTCGATGTC 832172 28 100.0 33 ............................ GCCGGTCATCACGCGCGGCGGCGTCACCTACTG 832233 28 100.0 33 ............................ CTCGGCGCGCCGCCGCTCGTACTCCTCCAGCGA 832294 28 100.0 33 ............................ CGAGGCCGACGCCATCGACGGCGTGCTCGACCT 832355 28 100.0 33 ............................ CCCGCTCTACATCGTCCGCCACTTCCCCTCCGC 832416 28 100.0 33 ............................ CCTGTCCCCGTCGGCCAGGTGATCGCCGGGCTC 832477 28 100.0 33 ............................ CGCTGACCGCCTGTTCGTCTTCACCACCAGCTC 832538 28 100.0 33 ............................ TATGCCGCGTCCGAGCCGGTTAAGCCCGGTAAG 832599 28 100.0 33 ............................ CGTCATCCTGCACCCCAAGTCGGACTCGTACTT 832660 28 100.0 33 ............................ CATGCTGCTCGGCACCGTGGCCGGCGGAACGCT 832721 28 100.0 14 ............................ CCCCTCGTGGAGAT Deletion [832763] 832763 27 92.9 0 .................-.....G.... | ========== ====== ====== ====== ============================ ================================== ================== 110 28 99.9 33 GTCGTCCCCGCACCTGCGGGGGTAGTTC # Left flank : TGGCCGGCTGCCGCCCCCACGTCAGCCCGGCCGCCTGCACGGGGGCGGCCTCGATCGGGTCCATGGCCTGAAACGCCGGGCACGCCTTGCCGCAGTCGTGGATGCCGCACACCCACATGAACCACAGGCGGCCCCGGCCCCCGCTGATCTCATCAAGCCTGCGCCGAAAGGCCGGCGAGAGGTACCGGTCCCACATGAGCCCGGCCACTGCGGCCGTGTCCAGCAGATGCCCGATCAGCAGATGCGTACGCCCACCGTTCCTGGCCGCGGACTTCCCCCAAAGCCGCGAAACCCGCTCCACGACGTCGGGCGCCAGCCCCATGCCCCTCATGAGCTGAACCACAGAACACCTAAGATCTGCCACAGCAACCACTCCTTCCCTCACGCCCTGGCACACTAGGCGGTGCCACTGACAACGCCCCTGAGCGAGCCGCAGCAGACCCGAAATGCAAGTAAAGGAAAACCACCACACGCGCTAGCATCACCGCAGGTCACGAAGT # Right flank : CCGCAGGCCGCCTCGTGGCCCCAGATCGTCTCGCTCGTCCTCCTCGTCAGCTCGGGGTCTCGGCGCCCCCGGCCATGCCCACCCCCGCAGCCGCGCATCGGCCGTCGGCCGTCTCGCGCGGGGGAAATCCGCCATTGGTGGGGGGTGGTGGGGCTTCGGCTGGGTCGAGGTTGGCGACTCTCTGCTGTCGGGTCGCATCATGGCGTTATCGTGCGGGAACGAGCCCACTGGCTGTCATGTGAAGGTAATCGCACAAGACCTTCACCGTCCGGTCACTTTCAGCCACATCGTGAACACCGTGCGGCTGGGGGTGCAGACGGTGTGTGCGGGCCGCGCTTAGTCTCCCGGGCCATGGAACTCACTCGTACGAGACGCCTCGGTCTCGCCGCAATCGTCGCCGTCGCCCTCTCGCTCTTCGGCATGGCGCCCTCCGCAAGCGCCGCCGGCCCGGCCGCCGAACTGTCGTTCACGACCAGCGCGGCCACCACCACGCCCGGTGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCACCTGCGGGGGTAGTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCCGCACCCGCGGGGGTAGTTC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2151656-2153565 **** Predicted by CRISPRDetect 2.4 *** >NZ_QKWX01000001.1 Streptomyces sp. AC1-42T contig1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2151656 29 100.0 32 ............................. AGGCGCTGCTCGAACCCGCCGGTCTTCGTGAG 2151717 29 100.0 32 ............................. ATCGGGACACCCTCGGGCAGGTCGATCATGCG 2151778 29 100.0 32 ............................. ACGCTGATCCTTGACGCCGTCCACTGGTCCCT 2151839 29 100.0 32 ............................. TGGTCGTACGGGGTCGAGTCGAACCCGTACAT 2151900 29 100.0 32 ............................. GCGGGATCGCTTTGGCGCCAATTGTTGTACTG 2151961 29 100.0 32 ............................. CAGAACAGGTGGCTCGGCGACTGCGCGAACTG 2152022 29 100.0 32 ............................. GAACGCCTCGGCCAGGACGGGCATGCCGTCGA 2152083 29 100.0 32 ............................. TCCCCGACGACGGCCTCTCTCCGGGGCGCGAG 2152144 29 100.0 32 ............................. GCCCACCCCTCGGCCGCCTCGTCGAGGGGGTG 2152205 29 100.0 32 ............................. CCGACGCACACCCTCCCCGCGTACGCGATCCG 2152266 29 100.0 32 ............................. GCCAGGCGTACAACGCCGAGCAGCGCTCGAAG 2152327 29 100.0 32 ............................. GCCGGCCGGAGCCGAGACCCCGCCCGAGCCCG 2152388 29 100.0 32 ............................. GCACCAAGTGGTGCGTTGTCTAGGCAGGGTGT 2152449 29 100.0 32 ............................. GTCGCGGGCACGGATCACCGGGCCATCGCCGG 2152510 29 100.0 32 ............................. ACCCTGCGTCTGAAGGACGCAGTGGACTCCGT 2152571 29 100.0 33 ............................. CTCACTCGGCTCGACGTCAAGCAGGGCCAGGGC 2152633 29 100.0 32 ............................. GCAGGCCGTCAGTGGCGGCAGGCGAAGAAGGA 2152694 29 100.0 32 ............................. GGCAGCAGCGGCATCGCCCCGGCCTGTATCCC 2152755 29 100.0 32 ............................. GACGGAGGAGAACACCATGTGGCAGACCCTGA 2152816 29 96.6 32 ............................T AGTCACCGCGCTTCTCCGGATATCCCATCGTT 2152877 29 100.0 20 ............................. ACCCCGACCCGCACGTTCGT Deletion [2152926] 2152926 29 100.0 32 ............................. TCCTCGCGGTCCGCGGCGCTCGCCGCGGTGAG 2152987 29 100.0 32 ............................. CGGCTGCACCCGCACTCGCGCCGCAGCCGGTT A [2153009] 2153049 29 100.0 32 ............................. GGAGGCAGCAACAGCCAGCTGTGTTCCCGCCG 2153110 29 100.0 32 ............................. TGCATGACCGGGGTGGACTCGCGGATCGTCTT 2153171 29 100.0 32 ............................. ACCGGCATCGTGTCGCCGGACAATGAGTCCGA 2153232 29 100.0 32 ............................. GCCCTGGTGCGCGGCCGCCCGCTCACCGCGCT 2153293 29 100.0 32 ............................. TTCGCGCGGCGCTTCACGTTCAGGTCGGAGGC 2153354 29 93.1 32 ....................A...T.... CGGCGGCGTTCCCGGGCGAAGAACTCGTAGAC 2153415 29 93.1 32 ..A..........A............... GCGCTTGATGCGGAGGCCGGCTCGGAAGCGGC 2153476 29 96.6 32 ........................T.... TGGTGGTGCACAGCGACGGCCGGCTCGGCTTC 2153537 29 75.9 0 ......G.....GC...A....C.T..T. | ========== ====== ====== ====== ============================= ================================= ================== 32 29 98.6 32 CTGCTCCCCGCACGCGCGGGGATGGTCCC # Left flank : TCCCGATGTCGTGCGCCCCGGCCAACCAAACGGCAAGCCGCCGCCCGTCGTCCTCCCCTCCGGGGAGGGAAGCGCTGACGACCGCCCGAACACTGCCCGGCAACCACGAGTCCCACAACAGGCCGGCGACGGCCGCGCTGTCCTCCATGTGCCGCCACAGGGGCAGCCACCCCTCGGAGTCCCGGTCGTGCTTGGCCCACACGGTGCGAGTGGGGGCGGAGAGCCTGACGTGGAGACCGGGGCGGGAGGTGGGACGACTTGCGGTGGCCATGGGCCATTAATACAGGAGGAGAAGAGGAGGAGATGCTCATAGGATGAAAGTTGAGTCATTTTGAGGGATGTTGGAGCAAGTGGACCTCACGAGGGGTAACCAACCGCTACAGTCCCCAGCCACCTTGCGCACGACTCCAACCAGCAACCGGGCAGGGTCCGTTATGTCGGTTTCAATGAAAGTGGTCAAAAACCGCCTCCCCACCGGATAAAGTCGCAGGTCACAAAGC # Right flank : CGGCCCGCAGCCGCCCCCGTGAACTTAATGCCCCTCGCCGGCTCCGGTCGGCGGCGGGGCGCAGTTCTGTGTCTGGATCATGTGACGGCGCACACAGATAGGGCCCTGCCTCATACCCTGACAGGTGTCGAAGCTGTTCAGAGAGGGGCAAGGCCATGCGATTTGATGCTACCCCGGACCCGTACGCCAACCCGATCCCATTCGGACATCGCCTGCAGATCCTTCGCACCCGCCGGGGCCTGACCCGCGAGGCGCTCGGCGGGCTGATGGGACGGTCCGGGTCGTGGGTGAAGGGGCTGGAGTCCGGTCGGCTCAAGACACCAAAGCTCGATGTGCTCCTGCACCTGGCTGAGGTTCTCCGTGTGCGGGATCTCTCGGACCTGACCGGGGACCAGGTCGGTGTGCGAGCCGCGCTGTTCACCGGCCCGGGGCACCCGCGGCTGGCTGCCGTTGCGTCTGCGGTGGACGCCTTCGCCCTCACCTCGGACTCGCCCGCACCA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 2156295-2158275 **** Predicted by CRISPRDetect 2.4 *** >NZ_QKWX01000001.1 Streptomyces sp. AC1-42T contig1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================================ ================== 2156295 29 100.0 32 ............................. TTGACCGAGGGTCGCATCCTCGCCAAGGAACT 2156356 29 100.0 32 ............................. GTCCTGATGTCGTCGTCCGCACCACGGGCCGC 2156417 29 100.0 32 ............................. TTGACGGCCGAGGACGAGCAGACGTTCGACGA 2156478 29 100.0 32 ............................. GCGCGGTCGTGGGAATACAAGAAGGACCCCAA 2156539 29 100.0 32 ............................. GCGCGGTCGTGGGAATACAAGAAGGACCCCAA 2156600 29 100.0 32 ............................. GTCCTGATGTCGTCGTCCGCACCACGGGCCGC 2156661 29 100.0 32 ............................. GAGCTGCCGGTCGACGACGTCCGGCGGCATGC 2156722 29 100.0 32 ............................. AGCCACCGCGCCTTGGCGTAGTACGCGCTCTT 2156783 29 100.0 33 ............................. TCGGCCCAGGACGCGAACTGGTTGTGCAGGCCG 2156845 29 100.0 32 ............................. GAGACGATCAAGATGCTCATGGTCCGCACGGG 2156906 29 100.0 32 ............................. ACGCTCGACTCGATCAGCCCGGCGTTCGTGCC 2156967 29 100.0 32 ............................. GTGGCCGGTGCGCAGGCGAGAAGGCCGGACTC 2157028 29 100.0 32 ............................. CGGGCGGCGACCACGTCGGCGGCGAGGTCGTC 2157089 29 100.0 32 ............................. GGCTGGACCCGCGCAGCGTCGACCACGCCAAG 2157150 29 100.0 32 ............................. TACACCCGCGACTGGTCCTGGGCGCAGATCAT 2157211 29 96.6 32 ............................T CGCCAACTCGACACGTTCCAAAACTGCGTCCA 2157272 29 100.0 32 ............................. GGCAAAAGGCTCCGGGCCGGCGTGGCAGCAGA 2157333 29 96.6 32 ............................G TCACCGCCCGAGTCGGCCCGCGCCGGAACTTC 2157394 29 100.0 32 ............................. TCCGGCCCCCGCTGCCAGGAGTGCGACCGCCC 2157455 29 100.0 32 ............................. GCCTTGTCCGCGAGAGCTTCCTTGTACTCCGT 2157516 29 100.0 32 ............................. AGAGCGTGTCCAGTTTTCCGGACAGGGAATTC 2157577 29 100.0 32 ............................. GGGGTGTGGCAGTCGGCGCACGGGCGGAATCG 2157638 29 96.6 32 ............................G CCGCCGATGCCCATGACGATCCCTGGGGCCAA 2157699 29 100.0 32 ............................. GGAATCCCATGGCCTACTCCCGCGTGCCGAGA 2157760 29 96.6 32 ............................G CAGAGGAGGGACGCCGCGTGACCCCGAGATGC 2157821 29 100.0 32 ............................. TCGTCGGGGCGCAAGGCGATCTGGTCGGCGGC 2157882 29 100.0 32 ............................. CCGTCGGAGGCGTCCGAGGTCTTCACGATTTC 2157943 29 100.0 32 ............................. CGGCCGGCGTCCACGGAACGGTCGCAGTGCTG 2158004 29 100.0 32 ............................. TGCCTGGCGAAGGTCCGCGTGCTCGCGGAGTA 2158065 29 100.0 32 ............................. GACCATCCGAGCCCGAGCTCGACCCTCCCCAC 2158126 29 100.0 92 ............................. GACCGGCCGGACGACACCCTGCGCACCGCCGGCTGCTCCCCCCGCTCGGGGGATGTCCTCATGAACGTCTTGGGCAGCGGGCCGAACACGTT 2158247 29 82.8 0 ........G...T...T....C..C.... | ========== ====== ====== ====== ============================= ============================================================================================ ================== 32 29 99.0 34 CTGCTCCCCGCACGCGCGGGGATGGTCCC # Left flank : GGAAGGCGGGCGTTGCCTTCCCGATGTCGTGCGCCCCTGCCAACCAAACGGCAAGCCGCCGCCCGTCGTCCTCCCCTCCGGGGAGCGAGGCGCTGATGACCCGCCGCACGCCGGCCGGCAACCACGAGTCCCACAACAGGCCGGCGACGGCCGCGCTGTCCTCCATGTGCCGCCACCCCGCCGAGTCCCGGTCATGCTTGGCCCACACGGTGCGGGTGGGGGCGGAGAGCGTGACGTGGAGACCGGGGCGGGAGGTGGGACGGCTTGCGGTGGTCATGGGCCATTGATACAGAAGGGGAAGAGACGCTCACAGGATGAAAGTTGAGCCAATTTGACGGATGCTGGAGCAAGTGGACCTCACGAGGGGTAGCCAACCGCCAGAGCACCCCGCCACCTTGCGCACGACTCCAACCAGCAACCAGGCAAGGTCCGTTATGTCGGGTTCAATGAAAGTGGTCAAAAACCGCCTCCCCACCGGATAAAGTCGCAGGTCACGGAGT # Right flank : CCACACGAGCGCGTCAAGGTGCGTGTCCCAGCTCTGCTCCCCACACTCGCAGGGACAACCCCTTGGGGCTGCCACGCTCATCACCGGGGCCTCCGCGAATCATGTGCTCTGTGTAATGAATCACTCACGCAGCGGCGTTTGTGCGCGTACGCTCGACACGCCTGTGGGCACTCCAACACAGAAGCCGACGCGGGGAGTTGAACAGATGAGCGAACAGGCGGAGCAGGATCGGGAGCCCTCGAACGGCGCGGCCTACTTCGGTGAGGAAGTCCGGGCGGTGCGGGAGGCGCTGGCGCTGTCCCAGACGGAGTTCGCGGACCAGCTCCACTACCAGCAGGCCCAGGTCAGCAAGGTCGAGAACGGCGTCGCGCTCGCGTCGGAGGCATTCGCGGTGGCCATGGACCGCGTGGCGGGAACGCCGGGCACGTATCTGCGCCTCCGCACCAGGCTGAGCAAGCGGGGGCACCCCGAGTGGTTCATCCCGTACATCGCCCTTGAGG # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.14, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //