Array 1 8542-6171 **** Predicted by CRISPRDetect 2.4 *** >NZ_BKST01000112.1 Acinetobacter junii strain TUM15410 sequence112, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 8541 30 96.7 30 ............................A. ATATGAAATAAGTAAAATAACAGCGAGTAA 8481 30 100.0 30 .............................. TAGCTAGAAAAATAGAAAATGCTTATAACT 8421 30 96.7 30 .............................C GGGTTGAGCAATTTCTGTAGTGATTGGCTC 8361 30 100.0 30 .............................. GTGAAAACTAGTGAGATCCTGCTTGCACAA 8301 30 100.0 30 .............................. TAAAAAAGGAAATACACCCTTTAATCACAA 8241 30 96.7 30 .............................C TCGGATATGCACCTATCTTTTTCATTGAGC 8181 30 93.3 30 ............................GA TTAGGGCAATGGCTGGCGATTCCACATGGG 8121 30 96.7 30 .............................G AAAATAATGATTGGAGACAAACGCCCGATG 8061 30 93.3 30 ............................CA ACAGCAGTTGATTTATTACCACCAGCTTTC 8001 30 93.3 30 ............................AA TGATCGAAATGTTCAACCGTGAATCATGTC 7941 30 96.7 30 ............................A. CTGAAATAATCAAACGATAAAAAGCATAGA 7881 30 96.7 30 .............................A AAAAATTATGGATGATAGTTGCAGCTATAA 7821 30 100.0 30 .............................. GTGACTATGGCCGATTACAAGCCACGGGAT 7761 30 93.3 30 ............................CG GGAGCCGCTTCGATGTGAAATCGTCTTGCT 7701 30 93.3 30 ............................AA GCCGCCGAGCCGCCGTACATCCCGATTGTA 7641 30 96.7 30 ............................G. TGGCTAATGCCTGTAGCGTTTGGATCGGTT 7581 30 96.7 31 ............................A. AAAAGCCCCGATTAATTGGAAAGGGGGCGAA 7520 30 96.7 30 ............................A. CAACTGGGGCAGCCTTGAGGACTGGAACAA 7460 30 96.7 30 ............................G. GCATTTAAACGTGATGCTTGCAGTTAGTTT 7400 30 96.7 30 .............................C AAACTCTCACTAACTGGTGGGAAACAGGAA 7340 30 96.7 30 ............................G. TGTATGGAATTTGATAATAAAATTCGTTAA 7280 30 93.3 30 ............................CA TTCAACACATGTCTGAATACCGTTGTTTTC 7220 30 93.3 30 ............................CA AGACTTGAAGCCAATACAAGTGCGGAGTAG 7160 30 93.3 30 ............................CC GCAAACGGTGTAAAGCTGTATGTAAACTGT 7100 30 96.7 30 .............................G AATCCCCAATCAATGAATTTTATTATCAAA 7040 30 96.7 30 .............................G CTTGACCACCAACGACATGCCCGTTTTCGT 6980 30 93.3 30 ............................GA TAGAACCGCATTAAGCCCCTCACCTACAAA 6920 30 100.0 30 .............................. GTTTATCCATTACTAACCATTTCATAATAC 6860 30 93.3 30 ............................AA AAGACCCAGCAGCTCCCCAAGCTGGTACAG 6800 30 100.0 30 .............................. TTTACCCTGTCAGAACGATCTACACAAACA 6740 30 93.3 30 ............................CA AGGCAATGCGCAGGGAAAAGGTCTAACACC 6680 30 96.7 30 .............................G CGCAAATTGGCGCTCAATTTATTCTTGATG 6620 30 93.3 30 ............................AG CCATTTCACGGTACATTTGCACGTCTTTGT 6560 30 96.7 30 .............................G ATAATCGCCGTTGCTTGCCATACGGATTGC 6500 30 93.3 30 ............................AC CGCTACACGCTGAGCATCTGTTAGCGAATA 6440 30 93.3 30 ............................CG CCACACATAGAACGTAGTCAGTGAGCGCAT 6380 30 96.7 30 .............................G TACATACTGGATCGAGTGGAACAGCAAATC 6320 30 93.3 30 ............................AG CAATTCATGGTATGGGTTTTATTAGCGAAT 6260 30 93.3 30 .............C..............A. AAAGCAATATTGACCAATAAAAGTAAGCGT 6200 30 96.7 0 .............................A | ========== ====== ====== ====== ============================== =============================== ================== 40 30 95.8 30 GTTCATGGCGGCATACGCCATTTAGAAATT # Left flank : TTTAGAAAACGCATTAGTCAGCCTCCTTCGTAGTCCATC # Right flank : CATGTGATTTATTCATATGAGCCATTTAGAAATGTAACGGTCTTGATTGGCATTTGTTCTGTGTGTTCATTACGGAATTTATTTTAAGAATTAATAAGTGACTTATAATTCTTGTTCCAAAATTATCGTGTTATATGTCATTTAAAATACATAACATCAAGAAATATGATTCTTACTACATTCTAGATCTTTAATTTTTAAATAAGAAAATATACCCTGAAACCAACGTTTTTTTAGTGAAATTTTCATGCGCGGTTTATACCTCATCACCAATGATGATCCCATTCAACTTCTTTTAGAAAAGTTAGAGGCTGCACTAGCTACTGGTCATATAGCTATTTTGCAATATCGTCGAAAAAAAATAGAAAAAATAAATCAACCATCTGAAGTGGAGTTGATCAAAGTCCTTTGTGAAAAATATCAAGTCCCTTTTGTCATTAATGATGATTTGGCGTTAGCAGAACAATTTGGTTTAGGTGTGCATCTAGGGCAGTCCGATG # Questionable array : NO Score: 5.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.19, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.60,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1872-4963 **** Predicted by CRISPRDetect 2.4 *** >NZ_BKST01000154.1 Acinetobacter junii strain TUM15410 sequence154, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 1872 30 96.7 30 ............................T. AACCATATGTTGAAACGTTACGCAGAGTTA 1932 30 100.0 30 .............................. AGGTTTATCAATATGGCTCTTTAAGACAGT 1992 30 93.3 30 ............................GT CTGGGCATTTTCTCCAGTCGATAACTAAAG 2052 30 96.7 30 .............................C AGTCATAAATAGATAAGATGTTAAGATTAC 2112 30 100.0 30 .............................. TTCCGTGACAATCTAAACACGTTGCTTATG 2172 30 93.3 30 ............................TG ATACAAAAGCACCAGTAGCAATGGATTCAT 2232 30 93.3 30 ............................TT TGCTTTGTAGTCTGAAATACGTTGAACTGA 2292 30 96.7 30 ............................T. CTTAACCAAACAATTTGCAACAGCCCAAGC 2352 30 96.7 30 .............................G TATAGTGATCGGGTAATTTTGTGTCGTATG 2412 30 93.3 30 ............................TT TCTGGGTGTATGACGCTTTCTTCAGGCAAG 2472 30 93.3 31 ............................TT AGACCGCAATTCTTTGGGGGGTAAGCACCTC 2533 30 93.3 30 ............................TG TTGTTCGCTCGTAGACACTCGCTCTGTTGT 2593 30 96.7 30 .............................C TGGTAAGCAATGTAATGCCTGCACCTTCTA 2653 30 100.0 30 .............................. GCTGCTTTCGATCAAGTAGCTAAAATTGTT 2713 30 96.7 30 ............................G. AACAAGAGTTACACCAGCACCGATTAGAAC 2773 30 93.3 30 ............................TT TCCTTGATTACAAAATCCTCCTATCAGCTT 2833 30 100.0 30 .............................. AAGACCCAGCTGCACCTGATTCTGGAACAA 2893 30 96.7 30 .............................T ATCTGTGTAATCAGACGGCAGAGATTCATA 2953 30 93.3 30 ............................TT GCCGTTCGGATTTTTATGCAAGTTCTGGAG 3013 30 93.3 30 ............................TT GAGGTGTTGTTCTCCAGTCGCAGTCTGGAG 3073 30 96.7 30 ............................T. CTGACCAATTTGACTATGGAACAAATTTAA 3133 30 93.3 30 ............................CT AAAAAATCGGGCGTCAGATCGTACCATTTG 3193 30 93.3 30 ............................TG TGGCGGTGAATTGTTAATTCTTGAACAATA 3253 30 93.3 30 ............................GT CTTGATTAAAATATCTTCACTTAAAATAGG 3313 30 93.3 30 ............................TC TTTGCACAGAATGCGTCTAAAATCGCTCAT 3373 30 93.3 30 ............................TC TTGAAGTTGCAAAAGCAGCGCTGGATGCGA 3433 30 96.7 30 .............................C GTCAAACGAGTTAGCAACAGTCATCAATGC 3493 30 93.3 30 ............................TT CAATCAGAGCTTTTTGAAGTTGCTCAAGAA 3553 30 93.3 30 ............................TC AAAAGTAAAACTAGATTTCTCTGCATCGAT 3613 30 96.7 30 ............................G. TCTCAAAGAATCAGGTCAGATCGAACAAGA 3673 30 96.7 30 .............................T TAATCTGAACATTGGCTGGTGGATATGGTC 3733 30 96.7 30 ............................G. CTCAAGTTCTTCTCTCTTGTTCTTTCTGAT 3793 30 93.3 30 ............................GC ATTGTGGCCCACTGCGCCAAAATGCTTTGC 3853 30 96.7 30 .............................T CGCGCTCAACTATGATCATCTGATAAGTGA 3913 30 96.7 30 ............................C. ACCACCCTCGCCCTTATCACCGCCAAACAA 3973 30 100.0 30 .............................. CGTAAAAATTGATCTGCTGCACCTTGATAG 4033 30 93.3 30 ............................GT AAAGAATTAGTCCTAAATTGTCCTGTAAAT 4093 30 93.3 30 ............................TC GATTTGAATCTAAAATAGACTCAGTCAATT 4153 30 96.7 30 .............................T ATAACCAATTAATTGGTTGTTTCATGAGTT 4213 30 93.3 30 ............................TC AGAGCGCAGCACAGCAAATGGCACAAAACT 4273 30 93.3 30 ............................GT TACAGCGTAAAATATGGAATTTTAAAAATC 4333 30 93.3 30 ............................CG AGCTGCTGCTAAGTAATAAAAAGGGGGTTC 4393 30 93.3 30 ............................GT TGATTTGTACAGTAATTCGCTTGTTATTAT 4453 30 93.3 30 ............................TT GTGCGAACAAGGACTGGATTATTAAATCCT 4513 30 100.0 30 .............................. GCCAAAGCGCATGAGGTGGCGAATCTGAGA 4573 30 100.0 30 .............................. CACTCACCCAAATTAGAGCAGCTTTGCAGA 4633 30 93.3 30 ............................TC AAGATAAAACTTATCGCGTAGCTGATCAAG 4693 30 93.3 30 ............................GC TTGAAACTCTAGCTAATGTTTGTGATTTTC 4753 30 100.0 30 .............................. TGATTCAACTGCGTCCAATAATGGGGATTA 4813 30 96.7 30 .............................T TAACAACAACTACAAGCGACTTATTCACTG 4873 30 100.0 31 .............................. ATTGGAGCAATACTGAAACCTATCTGACTGG 4934 30 96.7 0 .............................C | ========== ====== ====== ====== ============================== =============================== ================== 52 30 95.6 30 GTTCATGGCGGCATACGCCATTTAGAAAAA # Left flank : GTAAATGGCTAGAACGATTCATTGATTATGTTCATATCATTCAACCGAGAGAAGTACCTCAAGCTAAAGTTACTGGTCATGCACACTATTATCGAGTCAATCCAAAGATGAGTGTTGAAGAGCGTATAGTTCATCAAGCGCAACGTCGAAATATTTCTTTGGATGAGGCTACGCAGCATTTTAAACAATATATTGAAAAACCTATTATTGAGCCTTATGTGAGTTTAAAAAGTCTGAGTGCAAAACGAGATCAAAATATAGATCGACCATATCGTTTATATATTGGTAAATCTCTAGTTGATGAGGCAAAAGATGGAGAGTTTGGAACGTATGGACTAAGTCGAATGGCAACAGTTCCAGAATTTTGACCCAATATTTTTTTACTATTTAACAGCTTAATAAAATCAATAAGTTACACCAAGTCGTTTTTTGATTGGGTAAATTGCTAAAAAACCATCATAAATACTTGTTGTAACTTATATTTTTACTATAATTTTATA # Right flank : ACATTAGTCAGCCTCCTTCGTAGT # Questionable array : NO Score: 5.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.21, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.10,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [83.3-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //