Array 1 3587-3253 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLYO01000345.1 Lactobacillus helveticus strain H-8 sequence345, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3586 29 96.6 32 ............................C TGTCTATAGATCTTAGTAGTGGGCTTTAATGT 3525 29 96.6 32 ....................A........ ATGCTCGGCTATACTATCAAGCAAGCTGTATC 3464 29 100.0 32 ............................. CTGGTAAATCTAGTGAAGCTTATAAGCGTCAG 3403 29 96.6 32 ............................C TCGTGTGATCTGCGGACCTTTTGCACCTAATA 3342 29 100.0 32 ............................. ACAAGTAAGGAATATTGACCGAATCTTTAACT 3281 29 93.1 0 ...........................TA | ========== ====== ====== ====== ============================= ================================ ================== 6 29 97.1 32 GTATTCTCCACGTATGTGGAGGTGATCCT # Left flank : TTAACTTTGGCAATCAATGATTTCTTAGCACTGATGTACTTGCCGTTGCTTAATTTTAAGACTGGAGCACTATCAGTGGGAGTGACCAACTTGCTAGTTAAGTAGTGATATCCCTTTTTAGCATGATGATCAACTTGTGTTAAAGCAGCATCCTTATAGATAGTAGCATTGTGCTTTAAGCGAATGATCTTAGGATTAGATGAGAGATAATCGCTCTTATTGAAAGCTGGAGCTTTCTTTTCTGTAGTAGAACTTTGAGACTGATTAGAGTTCTGTACTACTTGAGTATTTGATTGAGCATCGCTAACAGCATCGGCTTGAACGTGATTAGTAGAACAATTCCTGCACCGAGCAAAACTGCCACGATAGCTGTGTTCCACTTTGTCTTTTTCAACATATATTTTCTCCTCCATAATTTTTGGGAATTCATTGGTTATTTTACTCGTGTTTTAGAAGTTTTTAAATTAGGAAGGAAGAATTTAAAATGAGTAGAAGATATA # Right flank : AAAGCTTTCAAGTGCTATAAATAGTTCATATATGAAATAATATTTTACAAATTATGAGGAAATGAAAATGCAATTATCTAATAAGACTTTATCCTTATGGGGTAAGAAAAATGTTAATGATGACAATGAAAAAATGTGGTTACCATTAATTGCGCATTTAATTGATACAAAAAATGTGATCAATTGGCTATATAATCATTGGATCAATGATGGTCAAAGACATATTTTGCAACGGAATTTTGAAGATGAAGATATAGTTCAAAATTTAGTGAAGTTTTTGGGATATATACATGATATTGGAAAGGCAACACCTGCTTTTCAAATTAAACAGTCATATATCCATAATGAAGATTTAGATCAGAATTTAGTAGAAAAATTATTGCGAAATGGCTTTGATGGTCTAGATAATTCAAAAATTAAGAAAATTAATACAAGTAAGACGCCTCATGCATTAGCTGGAGAAGTTATTCTAGAAAACAACGGGTTAAATGAAAGTATAG # Questionable array : NO Score: 5.80 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 7046-7988 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLYO01000353.1 Lactobacillus helveticus strain H-8 sequence353, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 7046 29 96.6 32 ............................C ACGGTACCTTTTGGGACTTCTTGGCTGGTGTC 7107 29 96.6 32 ............................C TTCTGACGGCGTAACTGAATCTCAACAAATCA 7168 29 100.0 32 ............................. AGTGATTGCCGTGTAGTTCTTATGACGATTGC 7229 29 100.0 32 ............................. ATTAACCATTAAATCAACGCTGTGTGTTCCTC 7290 29 96.6 32 ............................C TTAGAGTTAGTCATAGTCCATGTAAACCGCGA 7351 29 100.0 32 ............................. CTGTTGTACTTTTCGTCTAAAATAAAGTCATA 7412 29 96.6 32 ............................C TAGAATTGATGGATATAGTCAATACACTATTG 7473 29 100.0 32 ............................. ATGAACTTTTACATCTTGTGATATCTCTTTTA 7534 29 100.0 32 ............................. AGGCAGCTTGATAAAGTCATCAAGGGTCATAG 7595 29 100.0 32 ............................. GCTTTTAGTCACCTCCTTCAAAGCTCAGCAAA 7656 29 100.0 32 ............................. TGCAATAGCAACACCGGCCGCTTGGTCTAAAA 7717 29 100.0 32 ............................. CTACTGATCCGACTGGTTTCGCCAATTTGGTT 7778 29 100.0 32 ............................. CACTGATATAGACATCGCACGCATGGCCCATT 7839 29 100.0 32 ............................. TTGATTGCTTCATCGAAGTATTGTTTTTGCAA 7900 29 100.0 32 ............................. CAGCCGGACTTGAAGCAGCGCGTAATTGATCA 7961 28 79.3 0 .....................-CA.C.AA | ========== ====== ====== ====== ============================= ================================ ================== 16 29 97.9 32 GTATTCTCCACGTATGTGGAGGTGATCCT # Left flank : ATATATATCTAAAAGTAAATGTGAAAGATTTTATCGACTAATTAAAACTGATTATGAAATTCCAACGCATATTTCTAAAATTACGCAATTAACATCAGAGAAATTGAATCAAAGTGGTATTGAATTATTTGATGCGCTTGAAGACTTAAAGAAGTTTTTAGCTGATAGATTAATAGTAGGTTATAATTTAAATTTTGATATTAATTTCCTGAATCGTGACTATCAAAAATATAATAATTCCCATATCTTGAATAATTTAAAGGATATATTGCCAATAATTAAGAATAAAAATAAGTTTATTGATAATTATAAATTAAATACAGTTCTTAAAAATTATGGTATAAAAAATGCTGAACCTCATAATGCTTTGTCAGATGCGTGTGCCACATTGGATTTAATTATTAAGCTGTTAGAGCAAGGCAGCTTTTAAAGATAATGAAAGTGATTAAAAATAGAGATTTAGTATTTTGAAAACGGCGATAGAATGGGATTTATTTACT # Right flank : AAAACAGGACTAACTCAACCAGATTAGTCCTGTTTTTCATCTATATTAAAATATTTCTTCGCTGCATCGCTCATGCGATCAGGCGTCCAGACCGGATACCATACAAATTCAACATCAACATTTTTTACTTCCGGCACTTTTTTAACTGCCTGAGTAATACTATCAATTAGGTAGCCAGTTAACGGACAAGCAGGGGTAGTCAAAGTCATATTGATTAAACAGATTCCATCTTTGTCCAGATCGATTTCATAAATTAAACCTAGATTGACTACATCAACATTCAATTCAGGATCGATAACTGTCGCCAATTGATTGATGATATCGTTTTTAATTGTTTCACCGTCACGCATTTTATCACGCATCCTTGCCAAAAATTTTAGCTTTGATTGCTTGGCCGGTTGGGGTACCAGCTAAGCCGCCGATTCCGGTCTCACGCAGGGATGCTGGCATTTGATGACCAACTTTTTTCATAGCATCGATACATTCGTCGGCTGGGATCA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //