Array 1 130600-130175 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRTL01000001.1 Phocaeicola plebeius strain AF27-30 AF27-30.Scaf1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 130599 36 100.0 29 .................................... TTCCAGGCATACCGCTACGGCGATAACAA 130534 36 100.0 30 .................................... ATGCACGTAGCGAACAGAAAGCATACCCAG 130468 36 100.0 26 .................................... AATGTCGGGTGCGGGCATGGTTATTT 130406 36 100.0 29 .................................... TGTCAAGAATGTCAAAGACCGTTTTTTAT 130341 36 100.0 29 .................................... TGTCAAGAATGTCAAAGACCGTTTTTTAT 130276 36 97.2 30 ...........T........................ TCGTAGCATGAAATGTCAGTTGTCAATGGT 130210 36 97.2 0 ...........T........................ | ========== ====== ====== ====== ==================================== ============================== ================== 7 36 99.2 29 GTCTATATGACAAAGTAATTTCTACTATGTGTAGAT # Left flank : TTATAGATTTTTTATGCAGAGAAAATCAGAAACAGAGTTCCCTTTATTTAAATATTAATGGTAATAGTTAGTTATGACATATCGGATGACCTTATCCGCTCTCGATTTCAGAGAATGCTGACTAAAAATGGTGCAATTCGTTTGCAATATTCAGTTTATGAAGTCGTTAATACAAAAAGAGTGATTGAGAATATAAAATTAAAGATTGTTGCGTATTCCAAACATTTTAGTGCAGATGATAGTGTGGTCATTTTTGAGATAAATAAGGATACCTTGGTAAAATACGGGAATGCTATTCATCGCGATACTGATATAGTTTTCTTCTAATAATTATAGGCATTACAAACCTAAGTCTTCTATATCAATAACATAGTTTGTAATATGCTGATTTACAATGCGCCTATTGAATTCTATAGATTAAGGTGGGGAAATATTCCGATAAAAATATAGGCTTATTTATTTGATTATTAATAAAAAATATGGATATTTGCATAGTAAGC # Right flank : TAAAGCAATGTCACATTTCGTTTTGCGTGTCTATATGACTAATTAATTGTTATTGGTATACTCAGTTCGTTTATATGGTCAAGAAATTTTATATTAGAGCTCTATTGGGTAGGACACCGATGGAATGAAGTATTAAAAAGCTTATGGAAGATAAAGACAAAATATACGGAAACCAGTGTGGAAGCGACAATGCTTTCACCAGGAAAGCAAGGCTGCTTCAGTCTATGTACAGTGTGGAGATAGGCGAAGAAGAAGGAGTAGGGCCTATAAAAGCCTCCAAGCAAAATATGGGAACATGATTAGTGGGGTGAGGTGTCCGGAAAGAACTTCCTTATGAAGGAGGCTTTCGAGTACGCCAAGAAAAGAGTGGCCAAGAAAAGTAAAAATGAGACAATAGACGGGTTCAGGCTGTTCAACAATCTGCTTTCGAGCCAGCCGATGACATTTATCTGTTCTATCCCTTGATGTTGTTGTTGAAGCAGGATCCGGCAATGGTTACG # Questionable array : NO Score: 3.18 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTATATGACAAAGTAATTTCTACTATGTGTAGAT # Alternate repeat : GTCTATATGACTAAGTAATTTCTACTATGTGTAGAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.30,-3.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [71.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 102801-103921 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRTL01000005.1 Phocaeicola plebeius strain AF27-30 AF27-30.Scaf5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 102801 47 100.0 30 ............................................... ATTTAATGCAATGAAAACAGTACCATATAT 102878 47 100.0 30 ............................................... CAAATGGTCAGCCTTATCAGCATCGACCGC 102955 47 100.0 30 ............................................... TCGAACTGACAAGAGCACAGGCAGCCAAGA 103032 47 100.0 30 ............................................... TCTTACCGCATCACTATCATTGCAAAACAA 103109 47 100.0 29 ............................................... TCTCATATAGTACATAAATCAGTCAATTA 103185 47 100.0 29 ............................................... ACAAGCATAAATATAATTCAACAAACTAA 103261 47 100.0 30 ............................................... ATTACAGAGTAATGTACCATCTAAATTCTC 103338 47 100.0 30 ............................................... TTTTTTTTCTTACATCCCTTTAGTTGTTGT 103415 47 100.0 30 ............................................... AAACAAATAAAATACATTCTACAAATATTT 103492 47 100.0 30 ............................................... ATATGGTACTGAACAGAACCTACGACGTAT 103569 47 100.0 29 ............................................... TTACACAACTACTATACATCTCTTTTACT 103645 47 100.0 30 ............................................... ATCTTTCAAATTATTTAACTACAATATATT 103722 47 100.0 30 ............................................... GCCTGGCAGGACGTGGATTCAATGGGCAAA 103799 47 100.0 29 ............................................... AAAATGGAATCCTATATGTAGCGTAATAA 103875 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 15 47 100.0 30 GTTGTGATTTGCTTTCATTTTAGTATCTTTGAACCATTAGAAACAAC # Left flank : GGCCGACCGTGAAATCCGTACAGGGCCTTACGGTCTGGTGGGTTTCTGGATTGGCGGTACGAATGAGCTGGTTCGTGAAATCCGTTTCTGGAAGACAGCCCGCACACCCCAGCAGTTGAAGCAGTTCATGTGGAAAACGGTAGACGGAAGTGACGAAAATCTGCTGCTGTATTATCCGTTGAACGGAAAGAAGCGCAACCTTGAAACAGGAGAAATCACCGAGGACGAAACCATGCTTTGGGATTTCAGTAACAATGCCAAACATCTCCCTCTTCCTTCAGGGGCTAAGTTTGACGACAATGATGGAAAAGGCTTTATGTTCCCTTTGGTTGATTAATTATAGGTTTTATTAATGAAGAAAGGCTGTCTCCAACACTCTGGTGTGGAGGCAGCTTTTTATGTGTTATTATAGGGACAAATGATATTTAAATATAGAAAAACTTTTAGTATCTTTAAACAACGGGAAACAACTATCACTCCAAGAGCTCCCGTCTTCTTGT # Right flank : CTTGTTGATTGTTTCTTGTTGTCTATCAGTAGGTTATAAGTAAATTTAGAAAAAGAAAAAGTTGTTTCTTGAAATAATAAATCCCATATTAACCATGGGATTTATTATTTTAAAAGAGTTCTAATTGTTGTCCTGGTGTTTTTACCCCACTTGCTTTCTTGCCATAAAATAGCTCAATTTCTCCAAACTGTTTGTCTGTGATACATATAATTCCAACTTGACCATATTCAGGTAGAAAGGATTTTACTCTTTTTATATGCACTGCTGCATTTTCACTGCTTGCACAATGGCGTACATAGATAGAGAATTGAAACATTGTGAATCCATCTTTTTGTAGATTTTTGCGAAAATCAGTATAAGCTTTTTTGTCTTTCTTTGTTTCTGTTGGTAGGTCAAAAAGAACTAAAATCCACATAACTCTATATTCGCTGAAACGTTCCATTAGAATTCAGGATAAATGATTTTTCGTGATTCTCCAGAAAAGCATTTATATAGTGATG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCATTTTAGTATCTTTGAACCATTAGAAACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.21%AT] # Reference repeat match prediction: F [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-1.30,-1.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [60.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //