Array 1 222891-224138 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXXD01000003.1 Salmonella enterica subsp. enterica serovar Corvallis strain BCW_2858 NODE_3_length_360065_cov_4.48547, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 222891 29 100.0 32 ............................. TGCCTCAAGATTTTGAGCGGACGGGAGCTGGC 222952 29 100.0 32 ............................. GATGCATGGGAGCACGGTAAACCACTGGCGCA 223013 29 100.0 32 ............................. CGCATATAAAGCTGGCCTTACCGCTGGCTGGA 223074 29 100.0 32 ............................. CCATACCATTTCCACTGGCGCAACGATTTTTG 223135 29 100.0 32 ............................. CGGGTGATTTTAATGATGTGCTGACTACCGGC 223196 29 100.0 32 ............................. ATAACGACCTTGAGACGGTCTCAGTTCGCTGG 223257 29 100.0 32 ............................. AGAATGTTCAGAACGATTATATTTTGATTTGT 223318 29 100.0 32 ............................. GAAATGGCGATAGGCTTAGAAACGGTGCTGTC 223379 29 100.0 32 ............................. GGGCTCATAAGTATTTCACTGACTGACTACGG 223440 29 100.0 32 ............................. GCGCTAACCCGCGTCATTTCATCTGACACGCC 223501 29 100.0 32 ............................. CTATTTACCACGTATTTATCAGTTCGACAAAA 223562 29 100.0 32 ............................. GAGGGGAATCACCGCCTCGCCGAGCGCTACGC 223623 29 100.0 32 ............................. ATGCAGAAATGCGAGCGATGCACACGCCCCAT 223684 29 100.0 32 ............................. ATGCAGAAATGCGAGCGATGCACACGCCCCAT 223745 29 100.0 32 ............................. TTTCCGCAGATAGCTGCGAACGCCGGTTATTA 223806 29 100.0 32 ............................. GATGTAACGTCTCTCACCTGGCCCGGCGTAAC 223867 29 89.7 32 A...C.......T................ GGAATATGAAAATTATTATTTTTGCAACTGCA 223928 29 100.0 32 ............................. CGTTTCTCACCTTTTATTCCACAGCAGACGAT 223989 29 96.6 32 .................A........... GCCCGATCCCATCCTGGTATCGAGCCTCTGAA 224050 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 224111 28 86.2 0 .........A..T..........-.G... | ========== ====== ====== ====== ============================= ================================ ================== 21 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAATAGTTTATAAACAACAATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 240685-244314 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXXD01000003.1 Salmonella enterica subsp. enterica serovar Corvallis strain BCW_2858 NODE_3_length_360065_cov_4.48547, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 240685 29 100.0 32 ............................. TCACTATGTTAGGTATTTTCAAAAAGAAAGCT 240746 29 100.0 32 ............................. TGGGCAAAGTCTGGTTGTGTTATTGGAAGACT 240807 29 100.0 32 ............................. CGCAAGAAAGAGAGCAGTTTGCTCACTACCGG 240868 29 100.0 32 ............................. TAGTCGCAATCGACTTTATTCAGTAATCAATA 240929 29 100.0 32 ............................. AAAAGTTACCGTTCCCCCCGTTTCAGAGAACA 240990 29 96.6 32 ............................A GTACCATCCTCATATCGTTTTTGAGTTATATC 241051 29 100.0 32 ............................. GGACGGGTAACAGCGTGCTTGGTTCTGGTAAC 241112 29 100.0 32 ............................. CCTTCAGGCGAGCATCCGTAAAATTCTAATGG 241173 29 100.0 32 ............................. AGGCCGGGTTTTTTGATGGTGTGGTGATGGCA 241234 29 100.0 32 ............................. CAACATAGCTCGTAGTTTCTTAAAGGTGATTT 241295 29 100.0 32 ............................. AGTTAATCGCTATCGATGCAGGGGGCGATTTT 241356 29 100.0 32 ............................. TTTGCAAATCTCACCACATACCAGGCGCGACA 241417 29 96.6 32 ............................T TGTCTGTAACTCATGCCTTCCCTCATCTGGCC 241478 29 100.0 32 ............................. GATACTGATGGTGGCAAGCTGCCTACTTTTAA 241539 29 100.0 32 ............................. GAGTGGAATCCTCAATATCCAAACGGGGAATT 241600 29 100.0 32 ............................. GAGGCGTGGGAGGTTCTGCTGCCGACAATCCG 241661 29 100.0 32 ............................. GGAGAGCGCCTTTTTGATAGCGTCAGTCAGGG 241722 29 100.0 32 ............................. CAAATGAAAAATGGTTTAAAGGAGGTCTGTAA 241783 29 100.0 32 ............................. CTCGGCATTCGCGCAACAACCCTGGTTGTCCC 241844 29 100.0 32 ............................. GCGTACGGGGCTAACCCGTTCCAGTTGCTGCC 241905 29 100.0 32 ............................. ATATCAGACTCGGAGCGCTTAACTTTGAGTGC 241966 29 100.0 32 ............................. CGCGATTTAACATTGATTCAAAAGGGGAATGT 242027 29 96.6 32 ............................A CCCATGAGCTGATCCGCAAGGCTGGCCGCAAC 242088 29 100.0 32 ............................. GTCATTGGCGTGGCTGGCGCAGCAATCGGCGG 242149 29 100.0 32 ............................. ACAGCTTGAACCGATTGAATTCGGACAGTTAT 242210 29 100.0 32 ............................. CAAAGAGAAAATGGAGCGCCTGCAATCAACGT 242271 29 100.0 32 ............................. CTGGTGGCCGCACTGTGTGCCGACGGGGAATT 242332 29 100.0 32 ............................. TACAGTAAAACGCTAAACTTTTTTATTGTCGC 242393 29 100.0 32 ............................. CGCCGCTGGTGCAGACGCCGCGCCAGCCGTCA 242454 29 100.0 32 ............................. CAACGATTTAGCCCCGACATTTGACACTATGC 242515 29 100.0 32 ............................. GTTTCGTTTTTATTGCAGCTAATAACGACAGC 242576 29 100.0 32 ............................. AAAAAAGCGCCCGCATGATGGCGCGGTTACTT 242637 29 100.0 32 ............................. CAGACGAAAATCAGCCCGCATATTCCGACACA 242698 29 100.0 32 ............................. AAAGCGCGGATCAGGCTAACTCAATCAAATCG 242759 29 100.0 32 ............................. CCGCTGACGGTGGCCGCACGTTAGATGCTGAG 242820 29 100.0 32 ............................. CAGCGACACCACCCGCCCGGGGACATTGCGCA 242881 29 100.0 32 ............................. AGCTGTCGCCTGGCGAGTGCTCGACGCTCAAT 242942 29 100.0 32 ............................. AGTAGAGCTGACCGTTTCGCTGATTGCGCTGA 243003 29 100.0 32 ............................. GTTTTGCGCCGCCATACCTGCCTGACCAACGG 243064 29 96.6 32 ..............T.............. GTGGGGCGGACAGGCTGCCAGAGGCATTGGAT 243125 29 100.0 32 ............................. TTTGGGAGGATCGTCAGGGACTCCCGCGCCCG 243186 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 243247 29 100.0 32 ............................. AATGGTCCGCAGCTCTGCGCGCAACGCCCGGT 243308 29 100.0 32 ............................. CGCAGAAATCCGTAATCGCATGGATCAAAAGT 243369 29 100.0 32 ............................. GCGTTGGCGTCGCCCAACACCATCGCCGGGGC 243430 29 100.0 32 ............................. AACGCTGCTGGCAGTCTGACCCTATTGATTAA 243491 29 100.0 32 ............................. AGGCACTGAATCATGAAAATCAGCCCTCCAAT 243552 29 100.0 32 ............................. AACTAAACGCACCAATCAGAGGGCTTTTTGAT 243613 29 100.0 32 ............................. GCCGGCGGCAGTGGTTAATATCAGAAATAAGG 243674 29 100.0 32 ............................. GAGGTTTGGCTGAATTTTTGGTGTGGGCTGGA 243735 29 100.0 32 ............................. CCTTCAGGCGAGCATCCGTAAAATTCTAATGG 243796 29 100.0 32 ............................. GCGACCTGACTGAATCTCCTTTTTCAGTTGGG 243857 29 100.0 32 ............................. GTCTTTTTCCCTGCCCATCTTTCAGCTTCTAA 243918 29 100.0 32 ............................. AATCGCGCGCGCTGGCAGGGGAAATGATGGTC 243979 29 100.0 32 ............................. CGGGGGTTTCCACTCAAATACAGGTAGAACCA 244040 29 100.0 32 ............................. GTTCCGTGTCATTTTTATCGCCAGCACGCCGT 244101 29 100.0 32 ............................. GTGCTCCAGTGGGCTGCTAAGGGGCTTGGTGG 244162 29 100.0 32 ............................. AGTGAGCAGGAGCGCAACGTTTATCAGCTTAT 244223 29 96.6 33 ..........................T.. GGGAAAAAATATTTTGCCAAAATGTTCACTTAC 244285 29 96.6 0 ............T................ | A [244312] ========== ====== ====== ====== ============================= ================================= ================== 60 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //