Array 1 348289-349964 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJGZE010000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain 97 NODE_1_length_473521_cov_68.2829, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 348289 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 348350 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 348411 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 348472 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 348533 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 348594 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 348655 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 348716 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 348777 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 348838 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 348899 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 348960 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 349021 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 349082 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 349143 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 349204 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 349265 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 349326 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 349387 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 349449 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 349510 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 349571 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 349632 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 349693 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 349754 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 349815 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 349876 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 349937 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 28 29 98.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 366097-367268 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJGZE010000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain 97 NODE_1_length_473521_cov_68.2829, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 366097 29 100.0 32 ............................. TGAGCAACGACAGTAAATAAATTTTCGTGCTG 366158 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 366220 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 366281 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 366342 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 366403 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 366464 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 366525 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 366587 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 366690 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 366751 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 366812 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 366873 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 366934 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 366995 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 367056 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 367117 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 367178 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 367239 29 96.6 0 A............................ | A [367265] ========== ====== ====== ====== ============================= ========================================================================== ================== 19 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.14, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //