Array 1 44973-41583 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJVO01000007.1 Stagnimonas aquatica strain THS-13 contig07, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 44972 28 100.0 32 ............................ ATCGGCGTGAATGCCGATGCCCCGCTGAACGT 44912 28 100.0 32 ............................ CCGAGCTGGGTCAACAGCGCCTGGTCGCTCAG 44852 28 96.4 32 ....G....................... TGCGCCGACCCGGAAGCGGCAGGAAACACCTA 44792 28 100.0 32 ............................ ATGCTCGAAACGCCGGCACGGTAGTTATAGAT 44732 28 100.0 32 ............................ AAAGCTGCGGCCACTGATCGAGCCGTATTCCA 44672 28 100.0 32 ............................ TCGCGCTGCGACTGCCCGGCAGCTACGGCCCG 44612 28 100.0 32 ............................ TCGCCAAGCGCGGAGGCTGATATGCGCTTCAC 44552 28 100.0 32 ............................ GTCCAGGAACCGCCGCTGTAGCGGTAGCGAAT 44492 28 100.0 32 ............................ ATGGAGTGTGTTCGCGCCATGCGCGATCCGCA 44432 28 100.0 32 ............................ AGTAGAGAACACAACCGATGGCAAGCAACACC 44372 28 100.0 32 ............................ ACCCGTTGGAGTCACCGGCAGCATAAAAACGT 44312 28 100.0 32 ............................ TGGCCTGGCATGCGCTGGACATCGACTGCAAT 44252 28 100.0 32 ............................ TCCTCGAACACCGCGATCAGCAGGGTGGCGCA 44192 28 100.0 32 ............................ ACGAAGCTGGCTCGCGGCCAAATATGGGAAGC 44132 28 100.0 32 ............................ TGGCAGAAGTACCTGGCCATGTGGAACGAGCC 44072 28 100.0 32 ............................ GAACCCCCAGCTCACCGCCCGGCGCTCGCAGC 44012 28 100.0 32 ............................ GATAGGAGTGACATGAACGACCTCACCGAGTT 43952 28 100.0 32 ............................ ATGAAGCGCTACGTCGGCACCTGGGGCTTGGC 43892 28 100.0 32 ............................ ACCCTGCGCCTGCTTGTAGGTGCGCACATATC 43832 28 100.0 32 ............................ TAGCCCAGCGCCTGCAATGCCACCCAGATACT 43772 28 100.0 32 ............................ ACTTCATCCCGCGCCGCCTTGGCCTCCACTGC 43712 28 100.0 32 ............................ AATCCGCCGCTGGCCCTCTGCTGTGTCTACCT 43652 28 100.0 32 ............................ ATCGACGCCAGCCGGCTATCGGTTGAGGACGT 43592 28 100.0 32 ............................ TCAAAGGCGTCCAGGTCCAGCGCCGCGTCGCC 43532 28 100.0 32 ............................ TCGCGCGCTTCCTGCGTGGTGACGTTCAACAT 43472 28 100.0 32 ............................ AATGCCATAGTGGATCTCGGTAAAAGGCAGCA 43412 28 100.0 32 ............................ GTCTCGTTGCTGACCGCATCACCAGCGAGCAC 43352 28 100.0 32 ............................ ATCGGGCAGGGTGATCTGCTCCAACAGTTCGA 43292 28 100.0 32 ............................ CGGCAAACTTCCCGCCGCCAATCAGATCCAGA 43232 28 100.0 32 ............................ ATGGCGCGCAGGCCGTTGGCCGGCGTGTCGAA 43172 28 100.0 32 ............................ ATTGAGGCTGCGAAGTGAGCGCCAAGAGCATC 43112 28 100.0 32 ............................ AGTAGAAGGGGTTGGCAGAGACGTTCACTGGA 43052 28 100.0 33 ............................ AAGTATGAGCGCACGCGAGGCGTGTGCCCGGCT 42991 28 100.0 32 ............................ AACGAGATCGAGGCAGCGCTTGAGGAGCCGCG 42931 28 100.0 32 ............................ TGCGCCGACCCGGAGTCCGCAGGGAATACCTA 42871 28 100.0 32 ............................ AGCGGCTTGGATGATCTGCCAGTAGTCGCCGA 42811 28 100.0 32 ............................ TTGTTGGACTGCTTGGCCTCGAACAGCACGGT 42751 28 100.0 32 ............................ TTGTTGCCGTTGCTGTCAGTCGTGATCGTCGT 42691 28 100.0 32 ............................ AAGCACGTGCATTTTTGAGCACTTAGTGAACA 42631 28 100.0 32 ............................ CTGCCGTGTCCGTCGATCTTCGGCCGCAAGAA 42571 28 100.0 32 ............................ ACCATGCCCTTGAGCGTGCGCAGAGCGCTGGC 42511 28 100.0 32 ............................ TGCCCAGCACGAACAACGTCGCCGCTTTCGAG 42451 28 100.0 32 ............................ TGGGCAATCTATCTGCCGTACAGAGTTGAGGA 42391 28 100.0 32 ............................ ATGACGGCGCCTCCCGGTTGAGAGGCCGAACC 42331 28 100.0 32 ............................ TAAACCGTGTCAATGCAAAACGACGACCGTTT 42271 28 100.0 32 ............................ GTCAGGGAGTGACGGCAAGTCGAGTTGGAAGC 42211 28 100.0 33 ............................ CGACCACTGCCGCCGGCATCGGCCTAGGTGTTT 42150 28 100.0 32 ............................ TTGCGTTCCGCTGAACTGAAAGTCACCACCAA 42090 28 100.0 32 ............................ TCTCTGCACAGCAGGTCATGGCCCTGGGCCTC 42030 28 100.0 32 ............................ TCCAGGTACGCGCGCTGCGTGGCCGAGCACAG 41970 28 100.0 32 ............................ AGCGCCCGGGCGATGGCATCGCGCAAGCTCTC 41910 28 100.0 32 ............................ ACTGGAAACCGGGTGCTGACGTGCAACCACAA 41850 28 100.0 32 ............................ AAACGTGATGAGCAAGAACGATCCGACAGTCA 41790 28 100.0 32 ............................ GGTCGTAGCGCTCCAGCACGGATTGCCAGGGC 41730 28 100.0 32 ............................ TGACGAATTGAGGTGCAAGCCGTCTGCCCAAA 41670 28 100.0 32 ............................ ACGCAGGCCCAGGCAATGCTGCTGGTCGTTTG 41610 28 89.3 0 ....G............A.....G.... | ========== ====== ====== ====== ============================ ================================= ================== 57 28 99.7 32 GCGCACTGCCGCGTAGGCAGCTCAGAAA # Left flank : TCGTCCTTGCAGTCGCTGATGGGCAGCGACTGGCTCAAGGGCATGCGCGACCATGTTCAACTAAGTGAGCCGGTGGCTGTGCCTGTCGGAGCCAAGCACCGTGTGGTGAAGCGAGTGCAGGCAAAGAGCAGCCCTGAGAGGTTGCGGCGGCGACAGATCAAGCGTCATGGAATGACGCCGCAGCAAGCGCAAGAGAAAGTGCCGGACAGTGCGGCGGAAACCTTATCGCTGCCTTATTTGCTGCTGCGCAGCGCAAGCACGGGGCAACGGTTCCCGCTTTTTGTCGAGCATGGTCCACTGCTTGAAGCGGCAGTACCGGGCAGCTTCAGCAGCTACGGCCTGAGCGACGTCGCGACAGTGCCTTGGTTCTAACCCTTTTTTTAGGCGACGTAAGCCGCTTAATGCAATCAAGCGCTTACGTCGCTCTCAAAAAATGGGGCGTCACGCGGTAAAGGATTTATTCTCTTTAACAATCAGTAAGATGCTGGTTTAATTGCACA # Right flank : ATTCGCGGGAGGTGCCGACTGTGCGCCTTGGACGCGCATTGCCGCGTAACCGATCACTTCGGCCCAGCCTCGAGTAGCACACCCAAGCTACCAACACCTCCATTGCTGCGCCCCAAGTAACGTGATTGCGGCGACTGCAGGGTATACGCCGGAGGAGGGCGCCGGTCTACAAGGCGGTTGCTCGCACGGGGTCGCCTTCGTCGACGGACAGAATCTTCGCCAGGCTTGCCGGCACCGCCACCTTGCCGCCCTCGACATACAGCGCCGCCTGCGCGCAGCGGAAGCCGTGCAGATCGCCGTTCGATACCAGGCAGGGCACCCCGCCGCCGGCGGGCTCGGCGATTACCGCCTCGAACAGGCGTGAGCGCTTGATCGAGCGGATTTCGTTGCGGGGGACTTCCACCGAGGGGCCGCCGTCGAAGATGTCGATGTAGCCCTGGTAGCGGAAGCCTTCCTGTTCCAGGAGGTGCAGGGCGGGCGCGGTCTGCGGGTGCACCTTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGCACTGCCGCGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //