Array 1 263779-264098 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDNX01000007.1 Prosthecochloris sp. ZM Scaffold_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 263779 37 100.0 35 ..................................... TTAATGATTTCGGTATAGCGCGTACCGCCGCGGGC 263851 37 100.0 34 ..................................... TACGCTATTGGTAGTCATTGGTAGTTATCGGTAG 263922 37 100.0 34 ..................................... ATGGGTGAGCAAAAAAACCCCGGCGATAGTACCG 263993 37 100.0 33 ..................................... AGTTTAAACATTAGGGGTTAAGTTTTTTGGGAG 264063 36 89.2 0 ..............................-C...GG | ========== ====== ====== ====== ===================================== =================================== ================== 5 37 97.8 34 GTAGATGAAGACCCGCTTGGATAAAGGGGATTGAGAC # Left flank : CCGAATTTGTTCTGTGGAGGCCAGTTGTTCCGACCTCCGTGAAAAACGCTCTGGAGAGCCTTTCCTGGCGCAGGTTTCCAGAGGGTGAGTGTAGGAAGACCCGATTGAGTAAGGGGGGACGGGGGGTAGGTGCTATGTGTTAGGAGGGAAGTGCTATGTTCTGAGTGCTGAGCAATGAGTTCTGAGGGGATGCCAGAATTCAGCTGTAGGGAGCGGCCCCTGTGCCTGCGTTTTCTCTGTGTCATTGCCCAAGCGGGAACTGCTTGCTGTTCTTTTGATGTACTCGGTAAAATGTTTGCTAAAGTGATTCACAAAAACAGTTTACGGGAGTGTATCGCAAGATCTGATTCGCAGAAAGATAGAAGAGTAACAAAGAAAAGGGCTTATAAACATTTGTCGGATAACAGAAGCTTGAAAACATGCTTTTCGATTACCAAAAAAAGGAGGTTCGCGCAACAATGCCCGGAAAGTCTCGCCGGATAAAGACTGCAAAGGGGACA # Right flank : GAAGTTCTTAGTGCTGAGCAATGAATCTGGGATGAGCTAAGTGCTATGTGTTAGGTGTTAGGTGGGAAGTGCTAAGTGTTGAGTTCTGAGTTCTGAGCAATGAGCAATGAGTTTTGAGGGGATGCCAGAATTCAGCTGTAGGGGCAGGCCCCTGTGCCTGCCCGGACGAATGGTCGGTTGTCAGGGTAACGGGGGAGGGGAAGTGCTATGTGTTAGGTGTTAGGTGGGAAGTGCTCAGTGCTGAGCAATGAGGCAAGATCAATTGTAGGGGCAGGCCCCTGTGCCTGCGCGGACGGATGGTCGGCTGTCAGCGTATCGTGGGAGCGAAACATTGGTTGTCTTCCCGCCATCCAGCTTAATTCCAAGAAGCGTTGCGTGGCTTGCGAGGAGCGGGCAGGCACGGGGGCCTGCCCCTACGGGGATGGGGAAGGGATGTGTTAGGTGGGAAGTGCTAAGTGTTGAGTTCTGAGTTCTGAGCAATGAGCAATGAGTTTTGAGGG # Questionable array : NO Score: 5.95 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGATGAAGACCCGCTTGGATAAAGGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.00,-4.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 274758-275862 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDNX01000007.1 Prosthecochloris sp. ZM Scaffold_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 274758 37 100.0 35 ..................................... ACCCATTTCTTATTAGTACATCGTTATAATAATGC 274830 37 100.0 44 ..................................... CTAAAACTATCTGGTAATGGTAGTTATGGTAAGATGAATGATAA 274911 37 100.0 42 ..................................... GGATCCACCTTGGCTTACTGAGGCCAACGTCTACCGGCACAA 274990 37 100.0 35 ..................................... GTCAACTTCTTCAGAAAAGAACTCGTCAATTGCCG 275062 37 100.0 40 ..................................... ATGAAGCATCGCGTATGTTATGAAATGTCGAGCGACTTAC 275139 37 100.0 40 ..................................... ACAACGTCGGGCAGAGATTATAGGCGGCATCGCGTATGCT 275216 37 100.0 39 ..................................... GATGTCAATATCTGAGGTGTCAAACCCTGTGATCTAATT 275292 37 100.0 40 ..................................... TCCTCATTGCAGCGGATATAGGCAATATTATTACCAAAAG 275369 37 100.0 40 ..................................... ACACGTGTTTCAACTTCATACAAAGCCGCTGATTCCTTAA 275446 37 100.0 42 ..................................... GCTTCGCTTTCAACGCTTCGACTTTTTCAGCCGGAGTACGTT 275525 37 100.0 40 ..................................... AAAGAGCGAGTCGGAGCTGTTGTTTCCTGTCCGGATCCGG 275602 37 100.0 37 ..................................... TCTAAATTGGCTATATGGGCTTCAGAACCGTAATTAT 275676 37 100.0 39 ..................................... AAAGAGCGTTCCCATTACCGTTTTCATTCCCAAATGTCT 275752 37 100.0 37 ..................................... AACTCCATCATCCAGAGAACTTTTACCCACAGAATGA 275826 37 91.9 0 ...............................G.G..A | ========== ====== ====== ====== ===================================== ============================================ ================== 15 37 99.5 39 GTGTAGGAAGACCCGATTGAGTAAGGGGGATTGAGAC # Left flank : AAGAAGATAGCGTAAGATTTTACCGCTTATGCGAGGATTGCCGGCAGGATATTATCATTATAGGCGATGGGGAGATAACCCAGGGCGATGAGTATTACATTGCGTGAAAGCAGGTTGTTGTGCACGAAGCATTTGTTGAGCATGCTGCAATGCGGAAAGAATCCAATTGTAGGGGCAGGCCCCTGTGCCTGCCCGGACAAATGGTCGGCCGTCAGCGAGGGGTGCAACACCTTTCGCATTGATGGCCTTTGTTACACGGAGCTTTTTTTGAACGCTCTGTTTTGTATGTGAACGTGTTCTAAGTGATTGTTTTATTGGTTGTTATAGGTTTTTTGCGATAAAAAGCTCCGTGTAAGCGTGGTAAGTAACTGAAAAACAAGATGTTGCAGTGTTGTGAGAACGACAGAAAATGCCGAATTTGTTCTGTGGAGGTCAGTTGTTCCGACCTCCGTGAAAAACGCTCTGGAGAGCCTTTCCTGGCGCAGGTTTCCAGAGGGTGA # Right flank : AGGGATGTGCTATGTGTTAGGTGGGATGTGTTAAGTTCTGAGCGATGAGCAATGAGCAATGAGTTCTGAGGGGATGCTATAATTCAGCTGTAGGGGCAAAGGTCCCTGTGCCTGTCCGGATGAATGGTCGGTTGTCAGGGTATCGTGGGGGAAGAGAAGTGCTATGTGTTAGGTGGGAAGTGCTATGTTCTGAGTTCTGAGTTCTGAGGGGAAGGCGCTTAATTCCAAGAAGCGTTGCGTGGCTTGCGAGGAGCGGGCAGGCACGGGGGCCTGCCCCTACGGGGATGGGGAAGCGGGGTGTGCTATGTGTTAGGTGGGATGTGCTGAGTTCTGAGTTCTGAGTTTTGAGGGGATGCCAGAATTCAGCTGTAGGGGCAGGCCCCTGTGCCTGCCCGGACGAATGGTCGGGTATCAGCATATCGTGGGGAGGTAATGTGCTATGTGTTAGGTGGGATGTGTTGAGTTCTGAGTGCTGAGCAATGAGGCAAGAATTCAATTGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTAGGAAGACCCGATTGAGTAAGGGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.60,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA // Array 3 603470-603866 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDNX01000007.1 Prosthecochloris sp. ZM Scaffold_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================= ================== 603470 35 100.0 41 ................................... TTGGTTTTGCAATAAGCTCAGCTCGGTCTACTCCTTTATAA 603546 35 100.0 39 ................................... TTCAGCTCTTTCCTGTCTCCTTTCACTTCTTCCCTCATA 603620 35 100.0 37 ................................... CATGGGAATGATCTTGGTCTTGCCGGTACTCTTGCTT 603692 35 100.0 36 ................................... TTTTGAGAAGGTATTCATGACTTGAGTATACCTGAA 603763 35 100.0 35 ................................... GTTATGGGTTTCTACCAGGATGTCGTACACGGCGA 603833 34 88.6 0 ..........................-....G.GA | ========== ====== ====== ====== =================================== ========================================= ================== 6 35 98.1 38 GTTTGGATATAATCGTACTCGTGGAGTATTGCGAC # Left flank : GTGCTTTACTATCATAAAGACAAGAGCGGCTGCTTTCTCACCCATGATGGCCGGAAAAAATATCTCAAAATCTTCGAGACGAGAATGTGGCAGGAGTCTAAGGATGGCTATACGGGCAGAACGCTGAATGTTCGTCGGCATATTGAGAAACAGGTTGGTTTGATCAAGGATGTGATGACCGGAAAAATCGAGGTGTACGAACCCTATAAGATTCCAGAATAGTGGGTTAGCGTATAGGGAGCATAAAAAAGTCGATGGCTCGTTTTTTCATGCCGTATTTTTGGGGTGTTGAGGATTGTAACGTTTTTTATTATATGGGGTTATGTGGTCTTAACTAAAGTCTTTAGCCTTCGGTGTTGTTTAACTTGTTGATTATGTGTAAGATAGTGATATACCGAAAGAGTGAAATCGGCTTCTTGTCCTGTGGTGTGACTGATTTTCGGGTGAGCCTTCGATTTATGGCTGAGAGCCCTTCCTAGACAAGGGTTTCCAGAGGTAGG # Right flank : AGGTGTTACGTGTTAGGGAGCAATGAGTGGTGAGTGATGAGTGGTGAGTTGAAAGCAATGAGGGGGAAGAATGTGCTATGGGTTATGTGCTCAGTGTTAGGAGGGGGTCGGTGCCTGGTTCTTTGGCTCTGACTTCATGCCGGATGAGGGTCAGGTGATGATGAAGGGGCCTTCGATGTTGAAGTTTTTGTTGCCGTCAATGATGATTTTTTCGACACAGGATCTGCAGAGGGAGTAGTAGCGGATGGTGTCTTCGGGGTGATTGGGGTCCATTTGGCGAATGAGTTTTTCACGCATTTCGTGAAAATCATCTTCGGTGATGAAGCATTCAAAGACGCTGTATTAATCACCAATCACCAATCACCAATCACCAATCACCAATCACCAATCACCAATCACCAATCACCAATCACCAATCACCCTGTTTTTCAGGACGGTTCGGGCGTTTCGTTTGAGGCGTTTGAGGCCGGTGCGGTAGATGGGGGTTCGGGCGAAGAGGG # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGGATATAATCGTACTCGTGGAGTATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.10,-2.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 4 953034-958047 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDNX01000007.1 Prosthecochloris sp. ZM Scaffold_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 953034 33 97.0 34 ................................T CGGACGGGGACCACATTATTGCCCGCCGTAACGA 953101 33 97.0 33 ................................T GCGTCGAGAGGGCGCTGAGCGCCAAGCGTTCCG 953167 33 97.0 32 ................................T TGCTGCAGATGCCCTTGCGGCAACATCATCAA 953232 33 100.0 33 ................................. GCGGCTTGATGCTACAGCGACAAAGGCGACTGT 953298 33 97.0 33 ................................T TTGCCACAGTCACCGGAGATAGCTTCGGCGGTA 953364 33 100.0 35 ................................. CTGGGTCGGTGCCGTGATGTGTGTACCTGGCGAAA 953432 33 97.0 34 ................................T TGCTGCAGATGCCCTTGCGGCAACATCATCAAAA 953499 33 100.0 33 ................................. TCAGCAAGCGCTATACTCCGGCGGTCAACCGAT 953565 33 97.0 32 ................................G TACGCGAGTGCGCCGTCGATGTTGACTACATG 953630 33 100.0 34 ................................. CGAACACGCGAAACTTGAGAGCCTTGCGGTACTC 953697 33 97.0 34 ................................C AGAGCTTTACGCTGCACTTATTCGGGCTTTTGGA 953764 33 97.0 34 ................................T GCCTCCAATACCCGCACCTGCGCCCGTACCCGAT 953831 33 100.0 35 ................................. TCAACTGCCGGAATGTCGATACCGTAAACTGCAAG 953899 33 97.0 33 ................................C CTCTGCGCCAACAACCTGCGCAAGAGCTTGCAG 953965 33 100.0 33 ................................. CGTTCTGCAATACCGGAGTATCAGCGAGTGTAT 954031 33 100.0 34 ................................. CTGGGTCGGTGCCGTGATGTGTGTACCTGGCGAA 954098 33 100.0 34 ................................. AGTATACTTGCCATGCCCGATCCGGACATTTTGT 954165 33 100.0 33 ................................. AGCTCTACCCATTGCATGGAGATCAAGGCTGTA 954231 33 97.0 34 ................................C TTCTGCTCCAGGTATCGCTTTGCCGAGTGACCGG 954298 33 97.0 34 ................................T TCGACAAGCTCATCAGAGTAAGACAGAGGTAGCC 954365 33 97.0 35 ................................T TCAAGACCACTGAGATATGAACGGAAATAATCCAG 954433 33 97.0 34 ................................C GCTACCGGCATTGCTGGCGGATCCAGCCTCTCCG 954500 33 97.0 34 ................................C CAAAACAACAGCCCGGTTTCCGGTTCGTAGCGTA 954567 33 97.0 32 ................................C TCCGTAAACAGGGTTATATAGTAGACTATAGC 954632 33 97.0 33 ................................T CTCCAAAACTACCGTAAAAGGCTTGTCTATCGA 954698 33 100.0 32 ................................. TCTAACAATCGAGCTTTTAAACCCGATGTCTT 954763 33 97.0 33 ................................T GTGTTTTGAGCATGTGTTATATGGTTAAAATGG 954829 33 100.0 33 ................................. TTCAAGACGATCCTCCTTTCGACCGCGTCATTG 954895 33 100.0 36 ................................. AGGTGATAAACGGCACCCTCTGTAAATTCCGTTATG 954964 33 97.0 34 ................................C CTATCGATAACTGCCGGGATCTTGATTTGCACCC 955031 33 97.0 32 ................................G TCTTTAATTTGCAATGCAAAAACTTATAAATC 955096 33 100.0 34 ................................. TGATATTATTTGTTCCTGGTGAGTCAAAGGAAAT 955163 33 97.0 35 ................................C GACAGCTCCGCAGTCCGTCGATTCAGGCTGTCTTT 955231 33 97.0 33 ................................G GGAAATCATTGAGGCGATTGAAAACAATAACGA 955297 33 97.0 33 ................................T CACAACAGTTACGCCTTGCAAGGCAAGTTCATC 955363 33 100.0 34 ................................. TAATGCCGAGTTCTTCGAGTCTCGATCTCTGTTG 955430 33 97.0 34 ................................C CGCTTGCAACGTCCAGAATATCTTGGCGGCGGAC 955497 33 97.0 33 ................................T ATTATAACAACGTTTGTAGTGCCAAGCGCCAAT 955563 33 97.0 33 ................................T GTTAGAAAGGTAAGCAAGTAACATCACACAACA 955629 33 100.0 33 ................................. GGAGAGGATGAGTAACACGGCTCACCAGCGCGC 955695 33 97.0 34 ................................G CTTAATTTATGACAAATGGCCGAATTTGATGGGT 955762 33 97.0 34 ................................T CTCCAAGAGAGGGGTTCGCTGAACTCAAAATCAA 955829 33 100.0 35 ................................. CAAGCTACCGCTGCCACCATTAACCAGCTCCGCGA 955897 33 97.0 34 ................................T TTTTGTGGCGCAAGCTGTACGGACGTTACCGGCG 955964 33 100.0 32 ................................. GAAGCAACCGGCAATCTTAACCAAGTCTTAAC 956029 33 97.0 34 ................................C GCATCCATCAGTCAAAAAAAGGCCTTATCTCAAC 956096 33 97.0 34 ................................T CTTAATCTTACATTAACGGCAGTCCTCCCAGCGG 956163 33 100.0 33 ................................. GATTACACGGCATCGCTTGACTCATGGCATCTA 956229 33 97.0 33 ................................T TTAAACGGCTGCGTAAGCGTTACGGCTCCGGCC 956295 33 97.0 31 ................................C TTCAAAACTTGGATTCTAATGTCAGATCCAC 956359 33 97.0 33 ................................C GCATCCATCAGTCAAAAAAAGGCCTTATCTCAA 956425 33 100.0 34 ................................. CTTTTTACGCGATTGCCGCGGCTGAATTTGCGGC 956492 33 100.0 32 ................................. TCGACGACACTGCTTGTATACGTGCCTGGGAC 956557 33 97.0 34 ................................C GTCGCCCAGGAGGAAGCCGGTCACGTCGTTACGC 956624 33 100.0 34 ................................. TGAGGCTGTCAAGGGCAGGATGTTTGTCGTGTAG 956691 33 97.0 34 ................................T TTGCCGATCAAGTTTGCGTTTAGCCCCCTCCAAT 956758 33 97.0 33 ................................C TTATCAAACAGACTTTTTCGCAAAGCCGCCTTT 956824 33 97.0 33 ................................T CTGGCGAACATTCTGTCGATCCACAAGAGATCG 956890 33 100.0 34 ................................. GCATAAAAACTATGTTTACGCAACTTTTACGGTA 956957 33 100.0 33 ................................. AGTCTGCAGCCAATGCATTGGCCGCAAGGCACT 957023 33 97.0 32 ................................T AGGAGAACCGTGTTTGTGTGTTGGTGTGTAGT 957088 33 97.0 33 ................................G TGGCCAGTCTTGTGCGTGAAGCCCTTTTCCGAA 957154 33 97.0 33 ................................T GCAGATCAAGACAGGGATGGCAAAGCAGGATGA 957220 33 97.0 33 ................................C AGTTATGCCATTTCTGGCGCTTCTCGCTGATCT 957286 33 97.0 31 ................................G GCTGCTTGAAGCCTCTGGTATGTATCATCGT 957350 33 97.0 33 ................................G TCAAACCTACAATCCCATTAAAAAAATGATGTT 957416 33 97.0 33 ................................T TGAATGTGGTTGATTGTTGGTTGCTTTGGCGGC 957482 33 100.0 33 ................................. CACAATCACTTAACTTAGAGTTATCGTTAAGTG 957548 33 100.0 32 ................................. AATAAGGGCGCGACCTATTCCACGCCTCAAGC 957613 33 97.0 34 ................................T ATCGTGAGTTACGCATTATCCGTTGCCTTATATC 957680 33 100.0 33 ................................. CTGGCAGCGATATCAGGCGGCTGGAAGAGCTGT 957746 33 97.0 34 ................................G TCATCGTATTCCGTTATACTGCCGACGATGCATT 957813 33 97.0 34 ................................T CGGACTTGTCGAAGCCCTTTGCGATACATGTCGC 957880 33 97.0 35 .......T......................... TCCCTTTGACTATCGAGCAAATCGCAAGATCTGAG 957948 33 97.0 34 ................................T GCCGCCGCCGTCCCTCACGGATTGCCTCAGCGAA 958015 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 76 33 98.1 33 GTCGCACCCCTCGCGGGTGCGTGGATTGAAACA # Left flank : ACGCATATCCACCATTTGTCTGGAGGTGATTGTATGGTTGTGCTTGTTACATATGATGTAAATACCCAGGATAATGCTGGTCGGCGTCGTTTAAGACAGATTGCAAAAGCATGCCAGAACTACGGCCAAAGGGTTCAGTTTTCCGTTTTTGAATGCATGGTTGATCCTGCTCAATGGACCGCTTTACGTTCAAAGCTTGTCACTATCATGAATCCTGACAAAGACAGTTTGCGATTTTATTATCTTGGTTCGAACTGGAAACGTCGTGTCGAGCACGAAGGAATAAAGGACACTCGAGATTTTGAGGGTCCCCTCATCTTATGACGCGAACCTTATGCTGTCCTTATTTCCCTGGTGCGTTCGCGTTTTTTGTAAATAATTAATATTTTTGCAGTTAAGGGTTAAGCTGTCAAATCTGCGTTTACAGTTATTTGACATACGAAGCGGTTCGCAGATTTACTTCTCGCAAGCCGCGTAATATTTGACGCTTACGCCGAACA # Right flank : ATCCAAGACGATCCGCCTTTTGATCGGGTTATTGGTCGCACCCTGTAATCGGAAATTGAAAATCCCCAAATTTCGGCAATTAACAATCCCCACTTTTCGGAAAATAAGATTCCCCAGGTTGGCGTAAAAAAACACCCATAGCCCTATGTTTGAAGGTTCCACCCAATCAAACAGGAAAAGCTATGGGATCACAGTTAAAGCGCTTAACCATGTACAATGAAGTTAAGAATCTTTTCGAAAAAGGGTTGCGTATCAGTCAGATCAGCCGCAGCACCGGTCTTGATCGCAAAACGGTACGCAAGTACCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCGGGCTGTTCCAGCTGATCGACCAGCTGCATGAACAGACCTCATTTATTATCACGACCAACAAAAACCCGAAAGAATGGACAGAAATGCTC # Questionable array : NO Score: 5.62 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.46, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCTCGCGGGTGCGTGGATTGAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.60,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 5 1959727-1958666 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDNX01000007.1 Prosthecochloris sp. ZM Scaffold_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================= ================== 1959726 35 100.0 37 ................................... TAAGGCAGAAAGAGCCGTCGGAGCCAGTTTGGATCAG 1959654 35 100.0 38 ................................... CTATGATCGCCTTTACTATTGGTTCCCAGTTCCGCCAA 1959581 35 100.0 39 ................................... TCAGCCCAACCTTCTATACTATCATCAATAATGTGATTC 1959507 35 100.0 39 ................................... ACTGATTTCTCTTTCCTTCTCCTCAACATACTCGTTGAG 1959433 35 100.0 38 ................................... TAGGACTCAAGAAATCCAATGAGCGTTTGATATTCCAG 1959360 35 100.0 33 ................................... TCTGATCGAAGTGCCGAGGGCTTTCTACCCTTA 1959292 35 100.0 38 ................................... ATAATCATATTTCTCTATCCGATCACCTGTTCTAACAA 1959219 35 100.0 37 ................................... TCATTACTTCTTTACTATCTTTACCTTCAATAAACAG 1959147 35 100.0 39 ................................... TCAATTCTGTTCCGCGCCAAACTTCAGTTCTAATTGTGA 1959073 35 100.0 41 ................................... TTTGCCAGACATACCGCGGAGAGAAGCCTGGTGGCGAATCA 1958997 35 100.0 37 ................................... TTCTGCCATGCCGATTTTGTCGTACAATACGGCAATG 1958925 35 100.0 40 ................................... TTTACAATATTCCTGAAGAACAACTCCCCTTCCTGGCACG 1958850 35 100.0 39 ................................... TTCCGGACGCGGGAGCGCTCCTCAAGAATTTGTCGAGTT 1958776 35 100.0 41 ................................... ATCTGTACCCGGAGAGCGGACTTGATGTGCTCAAGGCCGCC 1958700 35 85.7 0 ..........................AG.G.G..G | ========== ====== ====== ====== =================================== ========================================= ================== 15 35 99.0 38 GTTTGGATATAATCGTACTCGTGGAGTATTGCGAC # Left flank : GATTTTTATTATCATAAAGACAAGAGCGGCTGCTTTCTCACCCATGATGGCCGGAAAAAATATCTCAAAATCTTCGAGACGAGAATGTGGCAGGAATCGAAGGATGGCTACACGGGCAGGACGCTCAATGTTCGCCGTCACATCGAAAAGCAGGTCGGTTTGATCAAGGATGTGATGACGGGAAAGCTTGAGGAGTATGAGCCGTATAAGGTTCCGGAATAGAGGGTTAGCGTATAGGGAGCATAAAAAAGTCGATGGCTCGTTTTTTCGTGCCGTATTGTTGGAGTGTTGAGGATTGTAACGTTTTTTATTATATGGGGTTATGTGGTCTTAGCTAAAGTCTTTAGCCTTCGATGTTGTTTAACTGCTTGATTATGCGTAAGATAATGATATACCGAAAGACTGAAATCGGCTTCTTGTGCTTTGGTATGACTGATTTTTGCATGAGCCTCGGTTTTTTGGCTGAGAGCCCTTGCTGGACAAGGGTTTCCAGAGGTAGG # Right flank : GTGTTACGTGTTAGGGAGCAATGAGTGAAGAGCAATGAGCAATGAGCAATGAGCAATGAGTGATGAGTGATGAGTGGTGAGTTGAAAGCAATGAGGGGGGAAGAATGTGTTATGGGTTATGTGCTCAGTGTTAGGAGGGGATCGGTGCCTGGTTCTTTGGCTCTGACTTCATGCTGGATGAGGTTAGATGATGATGAAGGGGCCTTCTATGTTGAAGTTTTTGTTGCCGTCAATGATGATTTTTTCGACACAGGATCTGCAGAGGGGGTAATAGCGGATGGTGTCTTCGGGGTGATTGGTGTCCATTTGGCGAATGAGTTTTTCACGCATTTCGTGAAAATCATCTTCGGTGATGAAGCATTCAAAGACGCTGTATTTTGAAATCATTGATGTCCCCATGGGTTCAGTGAAGGAAGATGAGAACTTTCTCAAGATTGCGATTCGGAAAGTTGACAATCTCGATCTTCTTCCTGATGAATGGCAGCGGTTTTCCCTTGTTG # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGGATATAATCGTACTCGTGGAGTATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.70,-4.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA //