Array 1 66046-63821 **** Predicted by CRISPRDetect 2.4 *** >NZ_VNXN01000005.1 Escherichia coli strain HH26C NODE_5_length_305562_cov_184.627785, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 66045 29 100.0 32 ............................. ACATTGAGTTCGGTTCGGTGGCATTGGGCGCT 65984 29 100.0 32 ............................. GCTACTCAGCGAACTGATAGATAAAGAACTGC 65923 29 100.0 32 ............................. GCGGCTGCGGAGCTTGTGACAGTGTCGATCTC 65862 29 100.0 32 ............................. GCCCGATTAAACTCAGTGACTTCAGAAAATGA 65801 29 100.0 32 ............................. AAAAACCAAAAAAAATGGCGGGGGGCAGTCGC 65740 29 100.0 32 ............................. GCAAAGGCGACCATTTAATTAACTAATCAGAA 65679 29 100.0 32 ............................. CGCACGAACTCGCGCATCGATTTATTCAGGGC 65618 29 100.0 32 ............................. ATATCAGTCGCCCGATATTAGCTAAACATTAC 65557 29 100.0 32 ............................. GCCCTTACCGCCGCACGGACATGCCGGACGGT 65496 29 100.0 32 ............................. CCCACCAGCTTTCGACGGTTTGAGTGCTTGCC 65435 29 100.0 32 ............................. AGCATTGACGCTATGCGATGGGCGAAAACAGT 65374 29 100.0 32 ............................. CTGGTTCCCTCAAACCCCATTCCCGCCATTTG 65313 29 100.0 32 ............................. GAACGCGAGGAAACCAGTCTGATCGGAATCTG 65252 29 96.6 32 ............................T ATTCCCCCAGTCACCCCCGCCGCCAAAATCAT 65191 29 100.0 32 ............................. GGGGCAACAACCAGATCTTTAATTGTCTGCGT 65130 29 100.0 32 ............................. TGCGTGTCGGGCTGATTCGTCAGCTTCTTGGT 65069 29 100.0 32 ............................. CGTACAGTATAACCTCATCCGGGAGCGTCTCA 65008 29 100.0 32 ............................. GAAAAAAACGCTACAAAAATGAGCTACGAAAC 64947 29 100.0 32 ............................. GATAGCTCGATATCATGACAAAAAGTTGCGCT 64886 29 100.0 32 ............................. TTCGTGCCAGGGCGCGGCGCGCTTACCGCGAA 64825 29 100.0 32 ............................. AGTGATAATTTAATACACACTAAATTCAGTGT 64764 29 100.0 32 ............................. GATAATTGAGGCCGCAAACGCCCAGGGCGGCT 64703 29 100.0 32 ............................. ATTCACATTCGCGCGCTGGGGAGTGATGATAA 64642 29 100.0 32 ............................. TCGCAGATAGTACAGAGCAACGCCAGCGCGCT 64581 29 100.0 32 ............................. ACCGACGAAGAAAAAGGCATTTTTGCCGAGGG 64520 29 100.0 32 ............................. TCAGCTGCGTTCTTCGCCGTGTCATCAATAAA 64459 29 100.0 32 ............................. CACATAGCTATACACAAATAACAGATCAAAAC 64398 29 100.0 32 ............................. GCAGGGATAGAGACAGGCAAACCCTAAAAACG 64337 29 100.0 32 ............................. TTCAAAACGAAACACGGAATTAAATGTGATGG 64276 29 100.0 32 ............................. CCGTTGTTGGTGCTGTAGTAGAAAACGCAAAA 64215 29 100.0 32 ............................. AATTCAGGTTCAAAATCGTCGATTTGTCGTAG 64154 29 100.0 32 ............................. TTTTTACACACCGGCTCACTGATTTTCGTCGA 64093 29 100.0 32 ............................. TCACCAAACAGGAGGGGGAAGGTGTTGGCGGA 64032 29 100.0 32 ............................. ATTGCAGGCGTCGGGTGATATCGCCAAAACCA 63971 29 100.0 32 ............................. CTCAGGTCATTGATCGGTTAGACTGGATTGCA 63910 29 96.6 32 .............T............... TGAGCACCTTATCGGGTCGCCCATGCGTCATG 63849 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 37 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGCGATAGCGGTCACCGGGGACGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCCTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GACGCACTGGATGCGATGATGGATATCACTTAGAGTTCCCCCCGCCCCTGCGGTAGAACTCCCAACTCCCAACTCCCAACTCCCATTTTCAACCCCATCAAGACGCCTTCGCCAACTCCTGCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCAGGATTGGTCGTCGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATAC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 91858-91220 **** Predicted by CRISPRDetect 2.4 *** >NZ_VNXN01000005.1 Escherichia coli strain HH26C NODE_5_length_305562_cov_184.627785, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 91857 29 100.0 32 ............................. TCTGGAATGTGGCGACAAGTTGAAGCTGCCGC 91796 29 100.0 32 ............................. AGAGTGTTTATATATCGTCATTCACCAAGATC 91735 29 100.0 32 ............................. GCCGCCGCCGTCGCGCTTAAATACGACAACAC 91674 29 100.0 32 ............................. GTCGGGTCTTCAATTTCAGGTTTTTCTAATTT 91613 29 100.0 32 ............................. TTACCAGCGCGATAAAGAACTGAGGAAAGAAT 91552 29 100.0 32 ............................. AGATACGCGCTCAGTTCGCCCATCCATGCGTG 91491 29 100.0 32 ............................. CATTGACTGGTAAAGGCGCGTAAAAATCGAAT 91430 29 100.0 32 ............................. GATTTTGTTAGCCCGTTCAATAAGTCGACGCA 91369 29 100.0 32 ............................. AATGAAATAAGAATATTAAAACTCAGCGGAGT 91308 29 100.0 32 ............................. GTTAACCTGTTAATCATCGTTCTGAGGGCAGT 91247 28 93.1 0 .........................-..A | ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.4 32 GAGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : TGGATGAATTGCTTGCGACGCTGACCGATGATAAACCGCGAGTTATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACTTGCATTGCGCGTAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATTGCCTGATTACACATTTATATGCGTTATAAATGGGTGGAACCTGTAAAGACTTCCACTCATTTATATTTTTTGTCGCCTCTGAAAACTCATCCATTTTGCCCATTCCGGACTAATCATTGTCATTCTCTACAAATTCTGTGGCGTTAATTTTTCTCTGGGGTGAAAAGTATTACGTCGGAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTCAATCAATGGATTAAGTGCTCTTTAACATAATAGATGTGTTGTTTGTGTGATACTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : TTCAGGTATGTTCAGGCCGGGCAGTTTCCCGCCCGGCCTTCCTCACTTACGCATTCGACCAGCTCTGGATCGAATCTTCATTCCCCAGCTCACCATGCATCACTTCATACGATTTTTTCAGGATCACATCAGTGTGCTTGGTTAGGTCTTTGAAAATGCCTTTATTCATCGCGTCGTAGCGTTTGGCGTTGCTCTCAACAGGCATAAAGATATCTTTCACGCGAACCATTTTGTCGACAGCCGTTGCGTAATCCGGGTATAGCCCCAGACCTACCGCCGTATTAATCGCTGCCCCCAGACTTGCACAACCATTAATGGCGTTACGGCGTGCCGGAAGGTTGAACACGTCGGCAAAAATCTGCATAAACAGATCGCTGTTCGAACCGCCGCCAGTAATGATCACATGTTTCGCAAAGTGATTAATTTCATTACACATATTGTCGTAATTGTTCTTCAGCGTCAGCGCCACGCTTTCCAGTATCGAACGATATATCCATGCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //