Array 1 132433-130575 **** Predicted by CRISPRDetect 2.4 *** >NZ_MOGM01000012.1 Escherichia coli strain 591 BN4_591_1_(paired)_contig_12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 132432 29 100.0 32 ............................. CCGGATACTAATTCGTGGAGCCTGCTGGACCC 132371 29 100.0 32 ............................. CACCAGATCTGACATGGTGCGGTGATCGCGCA 132310 29 100.0 32 ............................. CCGGATACTAATTCGTGGAGCCTGCTGGACCC 132249 29 100.0 32 ............................. TGTTTCGGCTGATTTGTTCGCCGCGTCAGTGC 132188 29 100.0 32 ............................. ACAGTTCCCCGCATTAGCGTGGATAATCCGTT 132127 29 100.0 32 ............................. CCCCTGATTAAAACCAATAGTCTCGTAATATT 132066 29 100.0 32 ............................. GCCAGATGAGGGATTCGCAATGAGCAACATGA 132005 29 100.0 32 ............................. TAATATGCTCTATAAGTGCCTCTATCCGATCC 131944 29 100.0 32 ............................. TCAGATCCGTACACTCTGCAAAACTCGCAATA 131883 29 100.0 32 ............................. GGCTAATTTTATTTTTTGCGTAGCGAGCGAGG 131822 29 100.0 32 ............................. GACCATTCTGTGAGCCGTAAAACAGAAAAATC 131761 29 100.0 32 ............................. ATTCTGTTTTCGCTGCTGTAGACCAACTTTGG 131700 29 100.0 32 ............................. CCCAGGTTTATTTGCATGAAAATACATTGCGC 131639 29 100.0 32 ............................. ACCGGGTATACAGAGCAACCGCCAATACTCGC 131578 29 100.0 32 ............................. CAAGTCGGGCGAAATGCAGGACACTTTATCCG 131517 29 100.0 32 ............................. TATTCCCCGAATGCTGGTCTGGCTGCTGATAA 131456 29 100.0 32 ............................. GGCTGCATATGAGCACGAGACACCCAGTAATT 131395 29 100.0 32 ............................. GGCTGCGTATGAGCACTAGACACCCGGTAATT 131334 29 100.0 32 ............................. CAGCTCGTTCGCATGATATGTACCCGAGACGG 131273 29 100.0 32 ............................. GCTATTACATGTGTGATTTATTACATCTGTAA 131212 29 100.0 32 ............................. TGATGAAAACCATTACCAAAGAACGTCTACAG 131151 29 96.6 32 .....T....................... GTCGTAGGTGATGAAAGAAAAGAATGATTTAT 131090 29 100.0 32 ............................. TCCACAGGTCGGAGAGGCTTTTCGTCATGTTG 131029 29 100.0 32 ............................. TAAACTATTCAACTTCATCTCATCTAAAATCT 130968 29 100.0 32 ............................. GGTCAGTGGTCTGTTCATGATGTACTCCATGT 130907 29 100.0 32 ............................. CCGTGGGCTAAACGATTGACGCGGCCTGACGG 130846 29 96.6 32 ............................T TGCAAATCGGTGTTATCGTCGAGCGTCCGCTC 130785 29 100.0 32 ............................. ACAAAATAGAGGACTTTGGTGAATATGCGGTA 130724 29 96.6 31 ............C................ TCAGCATTTGCTGGGTACGGCGCGGATATTG 130664 29 96.6 32 ............C................ AGAGAAAACGGCCTACTCGTAGTTCCCACACG 130603 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 31 29 99.6 32 GAGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCTGTTTCACTGGGAGATGCAGGCCATCGGAGTAGCTGAAATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTGTATGTAGGTGATGTATCCGCAAGAATCCGTGAAATGATCTGGGAACAAATATCTGGACTGGCGGAAGAAGGCAATGTGGTGATGGCATGGGCTACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACTCCGGTAGATTTGGATGGTTTAAGGTTGGTCTCTTTTTTACCTGTTTAAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GACGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCTCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 158375-157980 **** Predicted by CRISPRDetect 2.4 *** >NZ_MOGM01000012.1 Escherichia coli strain 591 BN4_591_1_(paired)_contig_12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 158374 29 100.0 32 ............................. GCGGTTTTTTTATAACATTTGATTCACTTCAG 158313 29 100.0 32 ............................. GTCGGATAACTCTTCATCGGCGCGAATCATGC 158252 29 100.0 32 ............................. AGCGAGGGGCGATTCCGGCAGGGCGTGCACAT 158191 29 100.0 32 ............................. GGCGCGGCGAACTCCAGCACAACCAGCCTGCG 158130 29 100.0 32 ............................. GATAATGTTCATCATATAAGAGAACGTCAGGT 158069 29 100.0 32 ............................. CAATGGGGGCAACGGTTCCCCTGGTTTTGTCA 158008 29 93.1 0 ........................G...A | ========== ====== ====== ====== ============================= ================================ ================== 7 29 99.0 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTTTTGGCGACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGATTGTGCATTGAAACCTGCATTGCTCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGATTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGCGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTCGGTATAGGATTACTTTAAATATTTAGCTTTTCAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATTATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTCGTATTAAGCAATATATCCACGTAACACCTCATGTTCAAAATAGCTCTCCATATATGATAAGTTCACAATTATCGATACAAAAAATCAAATTTAATTAAAGTGTTAGTTGTATGATACTTAAATCATTAAGAAATTATCATATATTATTTTTTTAATATTGAATTGATGTTTGTTAATTTTTTCTTTAGGATAATAGATTGTTTTTTAAGCTTATTATTCATTGATTAAGTAATAAATCTGGAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGTCTCTATAGGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAATGAAAATTGATAAAGTACGGTTTGCGTTGTCTTTTATTCTAAGGACATCGAGTGTAGTTAATATTCCTTGTAACAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //