Array 1 56565-58278 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAXKX010000010.1 Marichromatium bheemlicum strain DSM 18632 assembly_contig_10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 56565 37 100.0 35 ..................................... CGCATGTCGTGGAGATGCAGATCCTCGATCCCGAG 56637 37 100.0 37 ..................................... TTGCCAATATTACCCCACCGCCACTCGGCCAGCGGTG 56711 37 100.0 35 ..................................... CGCGACTGGCCCCCGATCGAGCAGGAGCCTCAGAC 56783 37 100.0 35 ..................................... GTAAGGCGCAGGCTGAGCACGGTCGACACCCCGGC 56855 37 100.0 37 ..................................... CCCGTTCTACCTCATAGATCACGGCGGGTCGTCGGTG 56929 37 100.0 35 ..................................... CCAATAAACGCTGGAGAGTTCTGGGCGACCACAAC 57001 37 100.0 37 ..................................... CCTCCCGGCAAAACAGTAAGGCCCTTAACAGCAAAGG 57075 37 100.0 37 ..................................... GTAAGCTCGGCGGCGAAGGTGCTTGCGACGTGGTCGG 57149 37 100.0 36 ..................................... CTTGTGGGCTTGCAATAGTTTCTCGGCGTAGTCCAT 57222 37 100.0 36 ..................................... GTGGCCTTACTGGCGTCACGAACGAGGATGCGGCTG 57295 37 100.0 35 ..................................... TCGCGTCAGCAGGCACGACGAACGGTCGGGCCAAG 57367 37 100.0 36 ..................................... TTTTTGAGTCCCAGATGTCGCCATAAGAATCGCCAG 57440 37 100.0 36 ..................................... TGAGCAATTTGTCGCGAACCGGTATTTGGGCGCGAG 57513 37 100.0 36 ..................................... TGGTAGACCGAGGCCGGCCCTGTCACGGGGCCTGTT 57586 37 100.0 36 ..................................... CGCTTGTATCTCGGTGAGTATTTCAGGAACATCAAT 57659 37 100.0 35 ..................................... GTTTGCGATACGGTCGGTCCCGGACCGGAAAACCG 57731 37 100.0 36 ..................................... AGACAACGCAGACATAAAGGAGAAAGACCATGCAGA 57804 37 100.0 36 ..................................... AGTGATAACCCCTTGTTTTGCAAGGCGTTCGATGGA 57877 37 100.0 36 ..................................... GGCACAGCAGTCGTAACCCACAACCCGGCCCGTCTT 57950 37 100.0 36 ..................................... AGATTACGGGCAGCGGGTCGGTCGAGATTGAGGCGA 58023 37 100.0 36 ..................................... ATTACGTGCATGTTAATGGTATCTAACACTATACCA 58096 37 100.0 36 ..................................... AGCAATTGTCGTCGGTACTCGGCCTCAATGTATCGA 58169 37 100.0 36 ..................................... AGAAAGCCGGCGCTTCATCGCCGCCCAGCTCAGCTA 58242 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 24 37 100.0 36 GCCGCAACACTCAATCCATTACAACAAGGATTGAAAC # Left flank : CGCCAAGGTGCCCCAGGGGAAGTCACGCCCCAACACCCGGTAGACCCCGGTCGAGATCCAGAAGCGCGACAACGCCCCGAGCGCACCGCCCCCGGCGATCGCTACAAGTTGCAACACGGTATCTCCCCGCCAAAAGCAATAAGTCTACTATGGACGTCCAGCCCTCTGCCCAGGCGAACGAGCCCGCCCGCCCAGGCCACTGCCGCACACCCGAAGCGCACACACAACGGGCACCGGTCACCTCGACTTGATATGATTGGGGCACGGCAAGACCGTATCCCACAGCGCCTTCGACACAGGCTGCTGAGCAAAAAATATCACCGACCACCAACACTGCTCACGTAATCGACTGATAAATAAGAAATAAAATCAAAAGGTTCAATGTCAGCCAACAAGAAAACAGGGCAAAAATCGGTGCAAAACGTCTATTTTTCGCTTCCAAAGAGGCTCGCCCCAAAAGAGCAATTATTTGATTTAAAAGAATTTTTAGAGAATTTGCG # Right flank : CACCGCCATGGCCTCATCCTTCACCGACGACTCGTCGGAACGCAACACTCGGCCTATTAAGAGGCTCTATCAAAAAGCCGTTCGCGTTGTCAGAGGCGTCGAGTTCATGCAACAGTGGGAGGCAAAACAGCGCCGCGACCAGACGGTCGCATGAGACCAACCCCTTGAGGGGCGAAAAAACAGGGGAACCTCACTTCGGGCGCCGGGCCGATATTCACGAGGCGTTTCTCTTCCTGGGACTCGCACTCATTTGCTGGAATGCTTTGGAGTGGGCGTAGGGCTTTTTGATAGAGCCTCTAAAAGCCCTCGAGAGCCGCGGCCTGCAGGTGTATATAGTGAACAGCCAAAGTGATCAATCCATCGCAACGCAGATGGCTTGCAACTTTTCATTACGCGGTTTCAAGAAGACGGCTGCCGCCGTGACACCAGCCATTTTCTCGAACGCTAGTGATCTTGTTGGGTTTCCTGCTCAAGGGCAATCACCACTGATGAAATGGTGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGCAACACTCAATCCATTACAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.80,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.37 Confidence: HIGH] # Array family : NA // Array 1 243309-240275 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAXKX010000001.1 Marichromatium bheemlicum strain DSM 18632 assembly_contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 243308 37 100.0 36 ..................................... GAAGACCCGGTCACCGGCCTCTCAGCGCTGCGCGAG 243235 37 100.0 37 ..................................... CCTCGACAGCTAACTGGGCTCTAGGCCTCGGCTCGCT 243161 37 100.0 37 ..................................... TCATGGTGCGGGATTGTCGACGGTGGCTGATTGTCAT 243087 37 100.0 36 ..................................... CCCACAACGGTATTGGGGCGAAACGAAAGACCGGCG 243014 37 100.0 37 ..................................... ATGTAACCACACGGCTAGACCCGCGTTTCCGCATCGG 242940 37 100.0 36 ..................................... TCGGGGTCGTCACCCTGGCGACCCCACTGGTGTGTA 242867 37 100.0 35 ..................................... ATGTCCACGCGGTCACGTTCGACTACGGCCAGCGT 242795 37 100.0 36 ..................................... CATGGTCACGCCCGACCGGTGGATAAGCGCCATCGT 242722 37 100.0 37 ..................................... TGAACATGGCTGACGCCAATCGGCGGATCGAAGAACA 242648 37 100.0 35 ..................................... GTTACCGGCGTGTGTGAAGCGGATTACGGTGGGTA 242576 37 100.0 37 ..................................... CCCAACTGCTATACGGCGCTGGCGTGGTCCCACACCG 242502 37 100.0 36 ..................................... GCCTACGGCTACACGCTTTGCCTTCAACAGCACAAG 242429 37 100.0 35 ..................................... GACACCCGCTTCCAGCGTATCCTCAAGCACTGCGT 242357 37 100.0 36 ..................................... TCCGTCCGAGGGCACCAACCCGGCCCGGCTGGATCT 242284 37 100.0 37 ..................................... TCGGATACGCTATGAAGGGGGCCGAGATCCCTGGGCA 242210 37 100.0 38 ..................................... GCGTTACCTCCGCGACAAATCAACCGTAGCGCGGTATC 242135 37 100.0 36 ..................................... ACCACAAGTATTGGTTTCCTTGTGTGTTACGCAATC 242062 37 100.0 36 ..................................... AAGCGGGTGTCCAATACACACAATATCCTATCGAGT 241989 37 100.0 36 ..................................... GCCTCAGTCAGGTGCAGCACGATCTTGCCGAGCTGC 241916 37 100.0 35 ..................................... ACCGGCGGCGGGCGCGCGCCACGCCCACACGGCGC 241844 37 100.0 36 ..................................... GTGACGTCATAGAACCGCCACCGCAAGATGTGGCCC 241771 37 100.0 37 ..................................... TACTAACGATCAATGGTCGACAGATCACTGATTGGGG 241697 37 100.0 36 ..................................... AGCAACAATTCGTCGAGCAGCGAAAGGATCTCTGCG 241624 37 100.0 35 ..................................... TCGGCCACGAAGGCAAGTGCCGCCATCTTCACGGG 241552 37 100.0 36 ..................................... ATATTCATCCTTCCCCTCATGGATCAGCTCAACAAG 241479 37 100.0 36 ..................................... TCGAGGTCACAGCTGCCAGAGACGTCCTCTTGGATC 241406 37 100.0 36 ..................................... ACCAAGCCAGAAGAGATCCTTGACTTGTCTGATCCT 241333 37 100.0 37 ..................................... CCGTAACCGGAGCACCAGAAGCGCCACGCCTTGGCGA 241259 37 100.0 38 ..................................... CCTCTAATGCTAATATCACTGCGTCTAAGCAACAGATT 241184 37 100.0 36 ..................................... TTGCCGGCAGCCTCCACGGCCAACACCGGCAGCACA 241111 37 100.0 35 ..................................... ACATCGCTGATGTCCACGGTCGCCGCCGCTTGCAG 241039 37 100.0 35 ..................................... CGTGGTGGAGGACCACTACAGTGGTCCCCGGGAGC 240967 37 100.0 36 ..................................... AGCAATAAGGCCAACCGACCCCGGACCAAAAGCGGC 240894 37 100.0 37 ..................................... TTTGGATCATGCCCCGTAACAGCGCCAACAGTATCAA 240820 37 100.0 36 ..................................... CCAGTGCATGATCCAGGCTCAAAACGTTGGCAGACG 240747 37 100.0 36 ..................................... ATGCACAGGCGCTCATCAACATGAGTCGTAAGCGGC 240674 37 100.0 35 ..................................... GCACCCCGGCGCGCCCTTTGTGGAGCCGTGCTACG 240602 37 100.0 36 ..................................... GCCGGTAGTCTGGCGGCCCCATAGGTTTATGCCGAA 240529 37 100.0 36 ..................................... GAGTCTAGCCTACTAACCTGACCCATAAGTCCTGGC 240456 37 100.0 35 ..................................... GGGTCCACCACCTGGCCTCCGGGTTCCAACGATAG 240384 37 100.0 36 ..................................... CTCGATGGCTCGATCCCCCGCCAGGCACTGCCCCGC 240311 37 97.3 0 ...................................G. | ========== ====== ====== ====== ===================================== ====================================== ================== 42 37 99.9 36 GCCGCAATGCTCAATCCACTACAACAAGGATTGAAAC # Left flank : GCTGTGGCTCGCCGACGGCACCATGGCACCACTGGACTACAAATACACCCCGCGTCGCGAACAGGTGTTCAAGACCCATGAGACACAGATCCTGCTGTATGCGATGCTGATCGCCGAGACATATGAATTGCCGGTCGAGCGCGGGTTCGTCGCCTATATTCGCGACGGCAGCCATCTGATCGAGGTGCCCGTGACCCCGGCCGGGATTACGCAGACCCAGCGTCTGGTCGACGAGATCTTTGATATCATCGAGACAGGCAGACTACCGGCGCGCACCCGCTCGCCCTTGCGTTGTGAAGACTGCTGTTACAAAAATATCTGCGCTTGATCGCGTGGGCGCTGCAAGTCTTTGAGTATTTTGATATTTTTTGAGTTTTTTCGATGCAGGGAGCGCTTTTTTCAGGTGTTTTTCAGCCGATTTCCACTCTGAAACGCACTTTTAGAGCACTTGTTTTTCAGGGTTATGTAACTGAATTTTATGTTTTTTTGGAGAATTTGCG # Right flank : CTGTATGCGCAGGCCAGCAAAGCGCTACGCAGGGCTATCGCATCAACACCTTCCAGGAAACAGAATATTAGGAAAGGGTGATGCGATAGCCCTCAGGGCTATCGCATCAAGCACTCTTAATATTCGACATTGCTTATATTTTATATAATTCAATGCGATAGAGAGTTCGGCGCTCGTTTGTCAAGACGAGGTTTCGCCGAAGGCTTGCTTCTTGGCGCCATGATCAAGACGAAGCCTCGCTCCAGTTGTGGATCTTGTCTTGCGCAGTCCGAGATCTTTCGTGAGAGTAACGACGGGGTTTCGATGCAATTTGGTGACAATATACTGATATCTAAAGATATTAGCGCATTTCAATATTAGAGATCCTTGATGCGATGGCCCTGCGATAGCCCTGGGGCTTGGGTCGTCAATAATGGACTGGGTGTTGAGTGTGGCTCTTTGATGATTAAAGAAAAGATGAGTGCGTCGATTGGTATTGAGAATTAAAGTGTGCTCTCTCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGCAATGCTCAATCCACTACAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.60,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : NA // Array 2 320312-319212 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAXKX010000001.1 Marichromatium bheemlicum strain DSM 18632 assembly_contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 320311 32 100.0 34 ................................ TGCGGCTCCGGCAAGAGGGGGATGGTAGGCGCGT 320245 32 100.0 35 ................................ CAACCGCATCCATGTCGGCCGGCACGACATCGGCT 320178 32 100.0 35 ................................ AGCAGGGAGTTTAGCAGGACTAAACATGCTGTCAA 320111 32 100.0 34 ................................ GCACATCAGCAGGTTCGCGAACGCCTCGGCGCTG 320045 32 100.0 34 ................................ GCGGCACGCGCCCCTCAGGCGCGCTCAGCTGCGC 319979 32 100.0 35 ................................ GATGTCGACCCGGTCGATCACGCGCGCGTCGACAT 319912 32 100.0 34 ................................ CGGGCCTATGGTGACGTGCTCGGCGTCAAGACCG 319846 32 100.0 35 ................................ TGCTCGCGAGCGCCGGTATCGGCGCACTGACTCCG 319779 32 100.0 37 ................................ CTGCGGTAGAGCATCTCTCACTCCTCGGCTCCGCCGC 319710 32 100.0 33 ................................ AATGGCGTCGCGGTCCAGCTCGAAGACCCTGAC 319645 32 100.0 37 ................................ CAAAGGGAATTATCGCCGAGGACGAAAACAAGAATCG 319576 32 100.0 36 ................................ ACTCCGCCGTATCCGGCCGAGCACATCACCTTCCGG 319508 32 100.0 34 ................................ TCTGGCGCCGGGATATAGAGGTTGCGGCGCCACG 319442 32 100.0 34 ................................ CCTTGGCCGATGTGGATTCGTCCGCCTCCGAGAA 319376 32 100.0 35 ................................ AATTACCCCGGCGCCGCCTACCCCAAGGTCTGGCG 319309 32 100.0 34 ................................ GCGAGCAGGCGGTCGAACTGCTCAGTGTCGTCTC 319243 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 17 32 100.0 35 GTCGCGCCCTATACGGGCGCGTGGATTGAAAC # Left flank : CCCTGTCTGTGGAGGTGAATCCACCATGATGGTGTTGGTCAGCTATGACGTCAGTACCCGCGAACCGGAAGGGCCGAAGCGGCTGCGGCAGGTGGCCAAGGCATGCCTCGATTATGGGCAGCGTGTTCAGTTCTCGGTCTTTGAGATCGAGGTCGAGCCGGGACAGTGGGCGCTGCTCAAACAACGGTTGCTAGACCTGATCGACCCGCAGCAGGACAGCCTGCGCTTCTACTATCTCGGCAAGAATTGGCAGCGTCGTGTCGAACACATCGGCGCGAAGGAGACGCTCGACCTGCATGGCCCCTTGATCCTCTAGCGGGAAAAACGCGAACCACAAGTGACCGGCGAAACCCCGGGAGGTTCGCGAATTTTCATCTCGATGATTTTTAAGCGTATTTTTTCGTGGTTCGCCGGTTCAAGCCTGGTTTGACAAAAAATCACCGCCGGTTCGCGAAATCGGCCGAAGTGCCATCGGCGTTTCAGTGAGTTAGGATGACCGC # Right flank : ATCCGCGCCACCTGATCCTCTGTCATCCCGGTAAAGGTCAGGGCTATCGCATCAAGCACCTCTAATATTCGATTACGCTAATATTAGATATAATTCAAAGCGATAGGGGGTTCTGCACTCGTTGCTTAAGACGAGGTTTCGCCGAGGGCTCGCTTCTTGGCGCCATGATCAAGACGAAGCCTCGCTCCAGTTGCGGATCTTGTCTTGCACAGTCCGAGATCTTTCGTGGGAATAAGGACGGAGTTTCGATGCACGATGGCGACAATAGACTGATATCAAAAGATATTGGCATCTTATAATATTAGAGATCCTTGATGCGATAGCCCTGCGGTAAAGGTCGCGCCCTATACGGGCGCGTGGATTGAAGCCTGGGTCTCGATCCCGGTAGAACTCCGGGGCCGTTGGGGCGTGCCCTATTGTTCGTGATACGGATTTACGGGCCTGTGTCTGGGTGGGGCGGGGGACTTCGGGCTCGGGTCAAGTGACCGGCTCTGTGGCTT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCTATACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGTGCCCTGTACGGGCACGTGGATTGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.70,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [41.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 1834-97 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAXKX010000035.1 Marichromatium bheemlicum strain DSM 18632 assembly_contig_35, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 1833 37 100.0 33 ..................................... ACGCCTTCAGGCGTGGAGACCAAGTACATCGCA 1763 37 100.0 34 ..................................... TGGGTTTGACTTGCGACACCGCCTCGACAGCTTG 1692 37 100.0 33 ..................................... CTTGCTTGGACTCGTCGCGTGTGATGCCGAACT 1622 37 100.0 35 ..................................... CTGTTCGATCAGGTGTTCCGCGGTGGTTTCCAGCG 1550 37 100.0 34 ..................................... ACCTCGAACTCGCCGGGCCGGAGCCCACGGCTTC 1479 37 100.0 34 ..................................... CGTCCGCCTCGGCGGTGCCCTGAATCTCGGCCGC 1408 37 100.0 35 ..................................... GTGGATTGAAACTGTTTGCAGGATCTAGTACCTCT 1336 37 100.0 34 ..................................... ACCTTCCTCGCCGTTTGACACGACCCACAAATAG 1265 37 100.0 33 ..................................... GTTAATGATGTCGGTGTTGTATGTCGCGTAAAA 1195 37 100.0 36 ..................................... CCATGTCGCCCACATAAAGCAGTTCAATCCCCAGTC 1122 37 100.0 33 ..................................... GCCGGCATCAGTGATGCCGGCGGCGAGCAGTGC 1052 37 100.0 33 ..................................... TGCCCGCACTCGGGACAGCTACCAGGACCAGCC 982 37 100.0 34 ..................................... CGACCAGATCAGCGACGGCGGATTGGGTTCCTGC 911 37 100.0 32 ..................................... GCTAGCCGGGCCGAAGCCCGGCGGGGTTGGTT 842 37 100.0 33 ..................................... CCATCGCGGCAGCGTGGACCACGACCGCGCCCT 772 37 100.0 34 ..................................... TCGTGCCGACTGACGAATGCGAAGACCATCTTGC 701 37 100.0 34 ..................................... CCAGGACCAGCGTACTGGGCGGTGGTGTTGCAGT 630 37 100.0 33 ..................................... CAAGCTCGTCGAGGAAGCAAGCCTCGACGAACT 560 37 100.0 33 ..................................... CCCCTTCGAAGGGGGCCGAAGATTCCAACCAAG 490 37 100.0 33 ..................................... AACTGGAAGTCACGCACCGCACGCTCGGTATCC 420 37 100.0 35 ..................................... GCCCGGCTGGAGAGTCGGCGGTACAGCCTTCTCGG 348 37 100.0 36 ..................................... GGCGAAATTGGGAAGGTAAGGAAGACCCCGCGACTC 275 37 100.0 33 ..................................... GATATAGCCTTGCGCAAAGTCGGCGGCTTCATT 205 37 100.0 35 ..................................... GGAGTGTGCCGCCTTCCGTGTATAGGGTTGTGGTC 133 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 25 37 100.0 34 GATCGAATCAGAGACCCGAATCCAAGGGGATTAAGAC # Left flank : TGGCTCATCCATGAGACCTGACCGATCATGGCACGAAAAAAACTCTTCTTGCTTGCCTATGACATAGCCGACGATGGTCGCAGAAATCGGGTGCATCGTGAGGCCACAGATCTAGGCGTGGCGTTGCAGTACTCGGTGTTTCTGATTCCGGCGACGGTGGCCGAGATCGATCGTTTCTTGTCGGTGATCGACGGCATCATTGATGCTCGTGCCGACGATATTCGTGTGTATCCCTTGCCATCCAGGCTTGAAGTCTGGCGTTACGGACGCCAGTCGCTGCCGCTCGGCACGTCCTTGATCATGGACGAACCCCTGGCAGAGGCCGTGACCAAACTTGTCGGTACGCCCCAACTCGATTAACGTGTCTGTACCTTCCAACAACGTCGGAGCCTGGGAGATGTCGCGGCTTGCTGTTCTGCACGTCAACTTTCGACGCCGTCAAAAAAGTGCGATACGGGTTTGTAGCGCATTGTTTGGGAAGTGTTTTTTGTTGTTAGTCA # Right flank : CCTGTCTCGCCTGCGGGGGACGGATCGTTTCCTCCCAGGGCTATCGCATCAAGGATCTCTAATATTATAAGATGCCAATATCTTTTGATATCAGTCT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATCGAATCAGAGACCCGAATCCAAGGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.30,-5.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 1 36283-34017 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAXKX010000026.1 Marichromatium bheemlicum strain DSM 18632 assembly_contig_26, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ===================================== ================== 36282 35 100.0 34 ................................... CCAGGGGCGCGGCTGCTCGGGCGGGAGTACGCGG 36213 35 100.0 34 ................................... CGTCCGGGGCTGAGCTACAACACCACGCCTATCA 36144 35 100.0 35 ................................... GACCACACCGCAGGAGATCACGCATGAGACAAACG 36074 35 100.0 35 ................................... ATATGGCGCGCCGTCAGCTCATCCGCCTACTGCGC 36004 35 100.0 36 ................................... GACGCGGTGTTGGTCGTCAAGCCCGGTGTACCAATA 35933 35 100.0 36 ................................... ACCGTGATCGAGGGCGAGGACACGCACGCCGCCTCG 35862 35 100.0 34 ................................... CTGCCGGTGCGCGGCACCGGGGCGCTGCGCGCGC 35793 35 100.0 34 ................................... ACGTCTCGCACACCCAGGGGGGCGCATCCGATGG 35724 35 100.0 34 ................................... AGAATAAAGGCAGTGTTCCGGAGGTGGTGATCAC 35655 35 100.0 35 ................................... TTGAGCGTCACTTGACTACTCTCGAGTGACTCAAC 35585 35 100.0 36 ................................... GCCCGACAACGCGGCCAATGTCGCGCTGGCTCATAT 35514 35 100.0 35 ................................... AACGAACCGTCCCGCCCCCTCGAATGCGTGCTCTA 35444 35 97.1 34 ................A.................. CCCTCCTCCATGACCACCACATGACCACCCTCAC 35375 35 100.0 35 ................................... ATCAGGCAGCCTCACGGGGCTCGGCCTCGTGCGCC 35305 35 100.0 35 ................................... CTGGACCCGGTATCTCAGAACGGCCCCCATGCCCG 35235 35 100.0 35 ................................... GATAACTCATTTGGCGGACGGGGCGCTCAGAACGG 35165 35 100.0 33 ................................... ACCGGCGGGCGCATCGGCGGCGACCAGGCCATC 35097 35 100.0 35 ................................... TACATGGCTCCAGGCGACCACAGCGAAACCTACCC 35027 35 100.0 35 ................................... GCCATCGCCGCGCTGCGCGGGCTCTATGCCGGCGG 34957 35 100.0 32 ................................... CAGGCTGACGCTCAGGCGCGCAATAGTGCCGG 34890 35 100.0 35 ................................... TTGCCGTTGGGCGAGTACAGGAACAGATTGCGGAA 34820 35 100.0 35 ................................... GAGAATCCGACACGGACCCCTCCAGACTCAGCCGA 34750 35 100.0 35 ................................... GAGAATCCGACACGGACCCCTCCAGACTCAGCCGA 34680 35 100.0 37 ................................... ATGCTGGTGACCGAGCGCGGTCTGTCGATCCCCGCTG 34608 35 100.0 35 ................................... CCAGCCGGGGCCGGAGGCCGGACGCACGACAGAAC 34538 35 100.0 35 ................................... TTGCCCTCTGCGAGTGAATCGAGACCCCCATCGAT 34468 35 100.0 35 ................................... AAGGATATCTGGGGCAACGTCGCCATCCTGGCCTA 34398 35 100.0 35 ................................... TCCGGGCACCGGCCCGCTCGGTGAGGCGGGTATCG 34328 35 100.0 35 ................................... GACCTGATGATGCGGTCGGAGTCCGAGAAAGCGGA 34258 35 100.0 35 ................................... GTCCAGTTCTGGCCCCGCCCAGGGGAGTCGCCCTT 34188 35 94.3 34 .................AA................ CCGGTCAACTCTCACGGGGTGGTCGACACTGACG 34119 35 91.4 33 .............TA.A.................. ATGCCGGTTTGTTGTTAGGACACCATACGTGAG 34051 35 77.1 0 T.G.TT.......TT................C..T | ========== ====== ====== ====== =================================== ===================================== ================== 33 35 98.8 35 GACACATCCCTCCCGCGGGAGGGCTTCGTTGAAGG # Left flank : CGGCGCGGATCGACCCCGCCGCCTCGCCCCGCGATGTCTCCAGCACCCCCAAGTTCGGCGTCGCCGGGGCCTATTGGCTGGCCTGGGAATCGCTGCCGCTGTGGCCGATGGTCAACGGCCGCACCGTCGGCATGTCACCCCGGGAGTGGCGCTATCCGGTCTGTGCCGAGTGGGTCGGGTGCGAGACGTTGCGCGCGCTGATCCTGGGCGGTGAGCAGTTGGCGCATCGGGAGCGCGAGGCGCTGGGGGTCACCTACTGGTCAGCGGCCCTGCTCAGTGGCGGCAAGTTCGGCAAGGTGCTCGGCTGGGCGCACCCCGCTGGTGCGCGAACCTGAAGTGACCGGCAAAACCCTAGGGGGTTCGCGCATGCATAAAGAGCTTTGAAAACAATACCTTGAGAGAATCGCCCTATGGGCGAACAAGATGGTGTATCGATTTTCCCTGGGGTTCGCGAAAATCAGGGAAATTTCCCTGTCTGCGAAGCAACTTGAGAGCATGCA # Right flank : GTTGCAGACGGTGCTGGCAGGTGAGTCGCTCGGTGCGAGGAGTGACAAGTGAAGAGGTGGCCTGTTGCGCTTCCTGTCTGCGGCGGGCTTAGCGGTGTGAGTTTTCCCTGTAGGGATCGGCGCGGTGGTGGGGTGAGCGGCCATCCGGCAAAGCGGTTGGCCGCGTGCGGCGTCGATGACTTTTTGTGTAAAATTTTGGAATTGATTATCATCTGCTTTTGAAGCCACTCGTTCCCGCTTAGCTCGGGCGAGCAGCCAGATGTCGTAGTTACCGCCTGAGGCGGTGGTCCCTGTGGAGACGATATGGCTGTACTGTTCGCCCCCGCTTTACCGGGCGCGCCGCTGTCGCTGGCTCGCGCTCGCTCTTCCCTGCTCGTTCTTGGCGCTGTGCTCGCCGGTCTGCTGGTCGCTGCGGATGGTCGTGCCGAGGCGGTACTGGAGCTGCCGTCGCTGGTCGTGACGGCGACCTTGAGTGAGCAGGAGGCCCGTGACGCGCCGGG # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GACACATCCCTCCCGCGGGAGGGCTTCGTTGAAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.10,-11.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA // Array 1 1312-60 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAXKX010000045.1 Marichromatium bheemlicum strain DSM 18632 assembly_contig_45, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 1311 37 100.0 34 ..................................... CTGGAAGCACTGCGAGCCATTGCCCGTACTCGGC 1240 37 100.0 33 ..................................... CTCCTTAGCAGGATTGCGTGATATAGCGGCCAT 1170 37 100.0 35 ..................................... ATCGCGGCTTCCGGGGTCTCGCCTTCGCCGAAGAT 1098 37 100.0 36 ..................................... CCGCCGAAGATCAGCACGCCACCCGCGACCACAATG 1025 37 100.0 35 ..................................... GCGGCGGCCTTGGTGTGGTGCAGGGTCTTGCCGAC 953 37 100.0 34 ..................................... GTGTCGCCCCGTTGGTGGCCTCGTTTCCTCAACC 882 37 100.0 34 ..................................... CCGTCTTTGGTGAAGACGGCGCCCACCTGCCGGC 811 37 100.0 35 ..................................... TCCCGGTCGAGTTCGCTGCGAGTTGCCATGTCTCT 739 37 100.0 34 ..................................... CGAAACCTGTTGGGCTACCCATCAGAGCACCTCC 668 37 100.0 35 ..................................... GGCCAGCTCGCACCGCAGCGGGTTGACGTCTCGGT 596 37 100.0 34 ..................................... GATCAACTCGACCGTTGGTGCGCCGGGTTTGATA 525 37 100.0 34 ..................................... TTTCGTTGCTGTTCTCGTCGCGCCGGATGAAGGC 454 37 100.0 34 ..................................... GATGCCGCTGGACACATACTGTTCAAGGGTGAAA 383 37 100.0 35 ..................................... CGAGTACAAGTTCGGCGGCGTTGCCTTCCGGTATC 311 37 94.6 35 ....................CT............... GCTCAGGTCAGCCCCGCCCAGGTCGGCCCCGCGTA 239 37 94.6 34 ....................CT............... GCCAGCTTGCCGTCGAAAGCGAACAGGTAGTGGC 168 37 94.6 35 ....................CT............... CCGGATCGCGCCCGGCGGTGGGTGGCCCCGCCGGT 96 37 94.6 0 ....................CT............... | ========== ====== ====== ====== ===================================== ==================================== ================== 18 37 98.8 35 GATCGAATCAGAGACCCGAATCCAAGGGGATTAAGAC # Left flank : GAATCCAAGGGGATTAAGACCCCGCGTCGCCTCCTCAGCCAGGGTTGTCTGATTG # Right flank : CCCTGCGAGGGGGAGAGCTCCAGGGTCTCGTTCTTGGGATCGAATCAGAGACCCGAACCC # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATCGAATCAGAGACCCGAATCCAAGGGGATTAAGAC # Alternate repeat : GATCGAATCAGAGACCCGAACTCAAGGGGATTAAGAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.30,-5.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [36.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 9879-10247 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAXKX010000008.1 Marichromatium bheemlicum strain DSM 18632 assembly_contig_8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 9879 32 100.0 37 ................................ GTACCGTGAGACCGCCACCCGGCAGCCCCTTGCCAAC 9948 32 100.0 36 ................................ GCTTGGCAGTGGGGGCCGGTCACCCCGAAGCTTTAC 10016 32 100.0 34 ................................ CGCTGCTGGTGCGGGTGATCCTCCCCGGCAGGAT 10082 32 100.0 35 ................................ AATCCAGGAGTCGACGGGGGCGTTTAGGCGGCATT 10149 32 100.0 35 ................................ CCCGGTCATTGCCAATGCCAATGCCAATGCCAATG 10216 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 6 32 100.0 37 GTCGCGCCCTTTATGGGCGCGTGGATTGAAAC # Left flank : CGCGCATCAGCGCCTTGATACGCCGCACCTCCGGGCCGAGCGGTGCGCGCGCGCGGATCCAAGCGGGCTTGCGCAACACCGGGGCATCGGTCGCGACCTTGACCGGGATGCGGGCGAGCTTGTCGCGGCCGCGCTGGTGGGTCTCCGGGGTCGCGCGCGAGGGCGCGCGCAGCGAATCCTGATCAGACATACGTTGAATTCCCGACCTCGTGATCACGCGAGGTTGTTGCGGTTGACGATATCCGCATCATCATCGGGGAGGCGAGACGCGGAGACAAGCCAGAACACCCTGCCCCGTCCACCCCTGATCTCGATCCGCCGTGCGCGAACCTCAAGTGACCGCCCAATCTCCGGGAGGTTCGCGCATCACATAACCACTTGAACACGAAGCACAATCCATCAGCGCAGCGCCCCCTGAGAAATGCGTTACCAGGGAAATCCCATGGGTTCGCGCAAACCGACGTCAGGACCTTTACCGATCAAGGCGTTATGATGGGTCC # Right flank : CGCTCCAGTGCTCTTGCATGACGGCAGGGCTATCGCATCAAGCACCCCTAATATTCGATTACGCTAATATTAGATATAATTCAAAGCGATAGGGGGTTCTGCACTCGTTGCTTAAGACGAGGTTTCGCCGAGGGCTCGCTTCTTGGCGCCATGATCAAGACGAAGCCTCGCTCCAGTTGCGGATCTTGTCTTGCACAGTCCGAGATCTTTCGTGGGAATAAGGACGGAGTTTCGATGCACGATGGCGACAATAGACTGATATCAAAAGATATTGGCATCTTATAATATTAGAGATCCTTGATGCGATAGCCCTGTGCATGACGGCGGGCTGCAGGGGCGTCGCGCCCTTTATGGGCGCGTGGATTGAAACACCTTTCAGGAGCGCAACCAGCCGGGCATCAACACGGTCGCGCCCTTTATGGGCGCGTGGATTGAAACCGGGAGGCTGGCGGGGATCTCGAGCAGATCTATAGGGTCGCGCCCTTTATGGGCGCGTGGAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCTTTATGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-6.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [43.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : NA // Array 2 10585-11287 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAXKX010000008.1 Marichromatium bheemlicum strain DSM 18632 assembly_contig_8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 10585 32 100.0 36 ................................ ACCTTTCAGGAGCGCAACCAGCCGGGCATCAACACG 10653 32 100.0 36 ................................ CGGGAGGCTGGCGGGGATCTCGAGCAGATCTATAGG 10721 32 100.0 36 ................................ GCTACCAACTGCTTGATGCCTGGGCCAAATTCAACG 10789 32 100.0 36 ................................ AGAGAGCATTTGCTTTTGCTCTTCGGTCAGCTCAAA 10857 32 100.0 34 ................................ TTCGAGCTCGCCTCGAAACCAACGCTCCGTGCGC 10923 32 100.0 36 ................................ AAGTGCGGGATTACTGGCGGATCGTACGTCGTTGGG 10991 32 100.0 34 ................................ TCTCGGGGGCCACGCTTGGGGATGAATCGCGCCC 11057 32 100.0 35 ................................ GCCCCTTGCGCGCACGCAGATAAGCCGCATAGAGG 11124 32 100.0 35 ................................ AGCGTTCTAGGCAACGCCATTGGCGGTCCTCCTCG 11191 32 100.0 33 ................................ GGCTTAACTAAATTTAGCTAAGGGTCTGTGGCC 11256 32 90.6 0 ...........G.........C......G... | ========== ====== ====== ====== ================================ ==================================== ================== 11 32 99.1 35 GTCGCGCCCTTTATGGGCGCGTGGATTGAAAC # Left flank : GCGCCCTTTATGGGCGCGTGGATTGAAACAATCCAGGAGTCGACGGGGGCGTTTAGGCGGCATTGTCGCGCCCTTTATGGGCGCGTGGATTGAAACCCCGGTCATTGCCAATGCCAATGCCAATGCCAATGGTCGCGCCCTTTATGGGCGCGTGGATTGAAACGCTCCAGTGCTCTTGCATGACGGCAGGGCTATCGCATCAAGCACCCCTAATATTCGATTACGCTAATATTAGATATAATTCAAAGCGATAGGGGGTTCTGCACTCGTTGCTTAAGACGAGGTTTCGCCGAGGGCTCGCTTCTTGGCGCCATGATCAAGACGAAGCCTCGCTCCAGTTGCGGATCTTGTCTTGCACAGTCCGAGATCTTTCGTGGGAATAAGGACGGAGTTTCGATGCACGATGGCGACAATAGACTGATATCAAAAGATATTGGCATCTTATAATATTAGAGATCCTTGATGCGATAGCCCTGTGCATGACGGCGGGCTGCAGGGGC # Right flank : CGTAAGCCTGCGCCGCTACCGCGGCGCATCAGGAGTGTCGCTCCCTTTGCGGACACATCACGATCATCCCAACCGATCAATCCTCCGCTGGCTCAATCCTCCTGCGACAACAGACGGTCGACGAGGATCGCAAACCAGGGGGTAAACCACTCCGGGTGCATGCGCAGCGCCCGACGGATCGCCGCCACCGACATCCACCGCCAGGCACCGACCTCGGCGGGATCGGGCTGCGGGTCCTCGGTGAAGTGGCCGTGATAGATATGCAGATATTCGTGCTCGGTCAGACCCGACGCCTGGTCCTCGGCGTAGTAGATCAGCTCATTGCGTTCGGTGAGCGGGACACGGAAACCGAATTCTTCCTTGAGCCGTCGTCCAGCACCGGCGACGGTGGTCTCACCCGGACGCGGATGACCGCAGCAGGTGTTCGTCCAGCGGTTGGCGAAGTGGTACTTGGCATCGGCGCGACGCTGCAGCAGCAGCTCGCCACGGGTGTTGAAGAC # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCTTTATGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-6.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : NA //