Array 1 6686-6920 **** Predicted by CRISPRDetect 2.4 *** >NZ_QVEU01000003.1 Anaerococcus nagyae strain OF01-3 OF01-3.Scaf3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 6686 32 100.0 36 ................................ ATATAATAATTTAACTCAAAGTAGAGAAGATGCTAT 6754 32 100.0 34 ................................ TTTAGTCCTTAAATTTGTATAACTACCATTAATA 6820 32 100.0 37 ................................ TAAAAACATTGGAATTAATCCTAAAACACTTTATCAG 6889 32 87.5 0 ..T...................AA.....G.. | ========== ====== ====== ====== ================================ ===================================== ================== 4 32 96.9 36 GTCACCTCCTATACGGAGGTGTGGATTGAAAT # Left flank : CATGTGCAAGCTATGCTTCTAAATAGTACATCCGAGGAGATTTAGAAGCATATCCACTATTTCTGATGAAAGGTTAATTATTATGATGGTATTGATCACTTATGATGTAAATACAAAATCAGAATCAGGTACTAAAAGACTAAGGAAAGTAGCAAAACAGTGCGTCAATTATGGCCAAAGAGTTCAAAATTCTGTATTTGAATGTTCACTTACACCTGCTCAATTAATTAATTTAAAAAAGAAACTATTAGATATAATAGATGAAGAAAATGATAGTATTAGATTTTATAATTTAGGAAAAAACTGGCAAAATAGGGTAGAAACTATTGGAAAAGATAATAGCTATGATCCAGATAAAGATTTATTATTAGTATAGACAATCGTAATTACCCATAAAATACTAGTAGACTCGCGCTGTATATGAGTATAATATTAACAATATTTAGTAATTTCCGCATTTTTTTTACTAAAATAATAATTAAAAATCCCTAAAAAATGCG # Right flank : TCAGATGTATTAAAAATAGCATCACCTAATTAAGTTATGATTTATAAGTTTAATAATAAACTTATTTTTAAAACAATTGATTGTTCATTCTGAAACTTTATACTAAATTAATCCAAATAAGAGTATCATATATTTATAAATAAATATTAATTTATATTGATGGAAAGGAATTGATATGTCTGATAATAAAGTTAAGAAAAATAATGGTATGCCTTCTTTCTTATCTGCTTTGATTGGAGCGATAGTTGGTGGTTTACTGGTTTACTTTTTGGCTGGCGGATTTTCTGCTAAGAATAACGATAAAAATGAAGCTGTAAGCCCTAGTCCACAAACTCAGAATGAAGATAAAGCTAGAGAAAAAAAGAAAAAAGAAGAAGTGGATAAGAGTTTGGGTAAATTAAATTCTAATGATAATGATACTTCTATGGAATCTTTGGTTGTAAAAAAATCAATTGATAGTGTAGTAGGAGTTACTACAATGTCTGAGGTTGTTCAACAAA # Questionable array : NO Score: 8.71 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACCTCCTATACGGAGGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCACCTCCTACACGGAGGTGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 164758-165636 **** Predicted by CRISPRDetect 2.4 *** >NZ_QVEU01000003.1 Anaerococcus nagyae strain OF01-3 OF01-3.Scaf3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 164758 29 100.0 32 ............................. CGTAAGACCTTGATACTCGGTAGCTTGATAGT 164819 29 100.0 32 ............................. CTCCCAATACCGATAAATTTATTCATAAGCTC 164880 29 100.0 32 ............................. ATAGGGCTGTTTATAGCAATGATGGCTATAGG 164941 29 100.0 32 ............................. CCACCTGATATTCCAAAGTGTGGCAACTTGAT 165002 29 100.0 32 ............................. GATCTTATAGAGGATAATTTGGTCATAATAAA 165063 29 100.0 32 ............................. CAAAATGAGTTAGAAGTGCTAAGAGAGATTAA 165124 29 100.0 32 ............................. AAATTAGATGAAGAAGGTGAAATTCAATGGAG 165185 29 96.6 30 ............................A GCTCCCATTCACCATTAATTAAAAAGTATT 165244 29 100.0 32 ............................. ATAATAAAGGCAATATCCTAGAGCTGACCAGT 165305 29 96.6 32 ..............T.............. ATGCAGGTGAAAGATTGACAGTTCTTAAGGAG 165366 29 100.0 32 ............................. GAGACGTATAGTAAACACCAGGACTTTTTATT 165427 29 100.0 32 ............................. ATTGCTTTTGCCTCTATTGCAATCTCTGCATG 165488 29 100.0 32 ............................. GTTTGTTCATCTGCTGTTACAAATTCTAAATT 165549 29 96.6 32 ..........................T.. GTTTTTGTTATTTAAGTTGTTTACTAATTCTT 165610 27 86.2 0 .................-...A.-..T.. | ========== ====== ====== ====== ============================= ================================ ================== 15 29 98.4 32 GTTTATCCCGCATACGCGGGGGTGATCCT # Left flank : TTTTAATAAAAATAGTATAATAGAAATTGGATGTGTAAAACTCTATAATGGAAATTTAGAAGAATTTGCTACATCCATAAAAATAGATCATAGTTTACCTAAAGAAATAGTAAACCTTACCGGAATAACTGATGAGTTTTTAGAAAAAAATGGAGAAGATGAAAAAGAAGCTCTAATAGCACTACTAGATTTTATCAAGGGGTTAACCATAGTAAATTACGGAAATAACTTTGATATAAATTTTTTAAATAAGTCTCTAAATAAACATAATTTAGGACATATAAAAAATCAGACCATAGACTTAATGAGATATGTAAAAAAAGAAAAAATAATGCTAGAAAACTATAAACTAGAAACAGCATTAAAATCATATGGGATCGATAAAAAAGTACCACACAGGGCTCTAGCTGATGCCAGATTAACCTATGAGCTTTCAACAAAAGTAAATTTTTTTAAAGAAAAAATAAAATAGATTGGCTAAAAATAAGGATCAAATTACT # Right flank : TTTATTTTTTAATAAATGTTTAATAAATGTAAAAATTAGGGAATATTCTCCTAAAATTTCTATACATAAATAAAGGATAATATTATTATAGCTAAAATAATTCAAAAAATAGAAAATTTTACCATTTTTGATAATGAATATTTAAATGATAAGAATTTGAGTTTCAAATCTAAAGGAATAATGACTTATTTTTTATTTTTGCCTGGTGATTTAGTGATTTATTTTAATGAGGTTATAACTCATTCAACAGATGGAATAAAATTATTTAGGTCAGGTGTTGATGAATTTATAAAAGAAGGCTATATAAGGTACTATCCTGTTCGTGAAAATGGTGTGATTGTTCGTTAGGAGACAGAAATCTTTGAAAAGAAAAGACCAGATGAGCAAAAGGTAAATATAGTTAAAGATTATGAAGAAGAAGAAAGACTATTAAATACCCATAAAACAAGTACTTATGCTAGTAAGTGCTCAAGCAATTATAATAGTTTTGACAAGATCAC # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTATCCCGCATACGCGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTACCCCGCATGCGCGGGGATGATCCG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.90,-9.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [83.3-85.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //