Array 1 7467-9220 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMZQ01000002.1 Veillonella sp. R32 contig_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 7467 36 100.0 30 .................................... AACTGGATATTTTCAATGCATCACTGGTTA 7533 36 100.0 30 .................................... GTAGAGATTGATGCTAAAGCTGTGCGGTCA 7599 36 100.0 30 .................................... GCGGAAGAAAACAAAGCGTGGACAGTGCCT 7665 36 100.0 30 .................................... TAGACATCGTTTTAATAGCATCGCTCATCT 7731 36 100.0 30 .................................... AACACCTTTTACAATTGTTATACTGCTGTT 7797 36 100.0 31 .................................... TAATGGTTACCCTCAATGCGTGTTATGTGGC 7864 36 100.0 30 .................................... CAGAGCAATCCTCGGACATAAAAATGGAGA 7930 36 100.0 30 .................................... GAACGTGAACCCGTAGTCGATGTCAATGAA 7996 36 100.0 30 .................................... AAATTACTTTTAGTAGATGCATCCGCTAGT 8062 36 100.0 30 .................................... CGCTCGCATTTAGAGGGTATTGTATTTGTA 8128 36 100.0 30 .................................... TTCCATCTTTTAAAATTTCTACGCAATCAA 8194 36 100.0 30 .................................... GTAGGTGCTTTAACTAAAGGTGCTTCTACC 8260 36 100.0 30 .................................... TCCATGATGAAAAGTCAGAAGCGGAACGTA 8326 36 100.0 30 .................................... TGTTTTTTGGTATAAAAAAAGCACCTCGCA 8392 36 100.0 30 .................................... AACGCTATTTTTTAGCAGTTTTGTAACCTA 8458 36 100.0 30 .................................... ACGCTCGTACGTGTTACCGTTTTTAGCAAA 8524 36 100.0 30 .................................... ACGCTCGTACGTGTTACCGTTTTTAGCAAA 8590 36 100.0 30 .................................... TATACGGACATGGCTGTATACCGCCTAGCG 8656 36 100.0 30 .................................... CTCTCGTAAATTTTCGCTCATTATGATTTA 8722 36 100.0 31 .................................... TGCACCTCGTTTTACTAGTCCGCAGGTACAA 8789 36 100.0 30 .................................... GATGAATTAGAGGGGTACACTTATTACTCT 8855 36 100.0 30 .................................... ATCCACAATTACCACCTACGCCTTTACCTC 8921 36 100.0 30 .................................... CACTGTATCTTTTGCAACTCATTGTCGCTA 8987 36 100.0 30 .................................... TTATCACCAGGTTTTATTAACACCTCAACA 9053 36 100.0 30 .................................... TTGTACCTGCGCTGATAGGGCTAATGCACG 9119 36 97.2 30 .................G.................. TCGTGTAGGGGTAAGACACTGACTCATACT 9185 36 88.9 0 .............................T...TCT | ========== ====== ====== ====== ==================================== =============================== ================== 27 36 99.5 30 GTTTGAGAGTAGTGTAATACTAGTGTGGTCTAAAAC # Left flank : GGAATTGCTACAGAAGAGGTTGAGCTATTGTATGAGATTAATCAAAAAATACAACAGCTTTTATTATCGTTAGAAAGCAGTCTTTCTATTGATGTTTTTCACAATGAATTAATTGCAGTACAAGATATTGTCAAGCTAGGCAATTTTCTAATTAGAGATGATGAGTTTGATGATATTGGTAAAGTTGCTAATTTTATTGATGTAGTTATAGAGTTACTAAATCCCAAATTGGTGATTTTATTAAATCCTCGTGCCTATATGGAGCATGAAGAAATAACTCTGTTTTTTGAAACAATGCTTTGTAAAAAGATTCCAGTACTATGTATAGAACGAGTATGTAAAGATGATATATCAGTTGTAAAAAATAAGGAGATAATTTATACTTTAGATAAAGATTTATGTGTATTTTAGATTAAAATACTAGTATTGCACTTGGCTCGTCACCGGAAAATTCTCTTGAACTTTAAATTCATAAAATTTTGTAAATATGCAATTTGGGT # Right flank : AATATATTTATACCTTAATTATTTCATACGATAGTATAAAATATTTTGTGTAAACAGTTCTCATATGGTTGAAAAGAGAACCAAACT # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAGAGTAGTGTAATACTAGTGTGGTCTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.00,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 62953-63456 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMZQ01000021.1 Veillonella sp. R32 contig_21, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 62953 33 100.0 35 ................................. TAAACCCCTCAACCATTATGGTTGAGCCGGCTGAT 63021 33 100.0 35 ................................. CGCAGCTTGATTTTTACCATTTTCAAATAATTGTT 63089 33 100.0 33 ................................. TGATAACTTGTTTTATATCATCTCCAGATAAAT 63155 33 93.9 34 ........TC....................... ATTTGGCGTGTAGAATACACCAAGAGCAGTAGAA 63222 33 90.9 34 ........TC...........A........... ACCGGCTTTGTACATAATGCCATTATGTGATAGA 63289 33 97.0 34 ............C.................... ATTGGTCATTAGTTTTGCAATATCGTTCTTAGTT T [63296] 63357 33 84.8 34 ...TT..A....C.A.................. TTTAAAATATCCCCTGATAGCACTAATAAGCAAT 63424 33 69.7 0 T.T...T.TC.....T.A...C..A.C...... | ========== ====== ====== ====== ================================= =================================== ================== 8 33 92.0 34 GTCGCTCCCTTTTCGGGGAGCGTGGATTGAAGT # Left flank : AAGATGGGTATTCGTATTCTGAAGATGTGGAACCTTCAAAGCCTATTGTTATCCCTATGAAAAAGATTATTATGACGCCGACTGAGGCTAACGAGCTACGGGATGTAAATATTAATGAAGCGGTAAAATCTTGGCAAGATAAAAATGTCATTATTGATACGGGAAATAGCGCTGAAAGTAGTAATTCATCCAATCAAAAACAGAAAGACTCAGAAGATGTAAATGGTTTCTTTAGTTGGTTTTAGGGGTAATAATGAATGGGCTGACTAGTGTTTATTTTAGGAAAATATCCTGAGCCTACTAGATATTGTAGATAAATATTCCTAGTTTGTAATGTGCTTGTGCGAAAATGTAGCATGTTGTGAATTGAGGCAGGTTTCGCACCAGAAAGTAGTAAAATTAATCTATCATATTTATATATATTGATGGAGTTAATAGTCTGAGCTTATGAAAAAGCTTAGTTTGCTGGGTATAGTAGAGGTTGTCTACTATATGTAGCT # Right flank : TAGAGGTTGCTAACTTACAGTGGGCCAAGACATGAGTCGTACTTTTATCATTTAATGAGGTGAGGGGTCTTTGTTTCACGATAAGGCAGGTGTTTATATGCTAAACTTGCTATTATATTTTTCTTTTTAGTTTTTTTTATGCTAGGGATAAGCAAGCGCTCGAGAAAAATGGTAAAGAAAAAAGTCGAAGAAACAGCAAAGAAGCGGCAAAGAAATAGCAAGGAAACAGCTTAAAGATGGCAAAGAAACAACAAAGAAGAAACTAAGAAAAGTTAATAGAGTGAAATAGAAATATAGATTAATTCAAGTTGAAAATTAAAAATACAAATAGAAATAAATACAAATAGAAATATAAAAATATCCTCAAGCTATCAGTCGTAGTAGCTTTCTGCAATCTGATAGGCAAGAGGATATTTTTTATAGAGAATTATATATTAGATTTATATGTATTAGGATTACCCCTATTAAGGCTACACACTCATACCTTTCGCATAGTTTTC # Questionable array : NO Score: 5.55 # Score Detail : 1:0, 2:3, 3:0, 4:0.60, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTTTTCGGGGAGCGTGGATTGAAGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,10] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.90,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-20] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 26722-27218 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMZQ01000050.1 Veillonella sp. R32 contig_50, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 26722 32 100.0 34 ................................ TAATAGAGCTAAACGTATTTGTAATCGAACGGTC 26788 32 100.0 35 ................................ TATTAATGGCCAAATGCGATCATGTATAGGGATAA 26855 32 100.0 34 ................................ TGAATACTCACCAATAGCAACAGAATTACCATCA 26921 32 100.0 35 ................................ CATCAGATAGCATGGATATTTGTTGCTCGTTAAGC 26988 32 100.0 34 ................................ AATCCCAGATTATACGTAGTGTGCAGACCATAGA 27054 32 100.0 34 ................................ GCCATCAACGATATTATTTGAACCTAAAGTCTTA 27120 32 100.0 35 ................................ AAGAGAATTTATCGAAACACATTTCAAATTTAATC 27187 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 8 32 100.0 35 AGTCTTATACATGTGTGTAAGTGGATTGAAGT # Left flank : CAGGATGGATGTGGTAGTGTGTATGTATTAGTGACGTATGATATTAATACAGAAAGTACGGCTGGCAAACGCCGATTACGTCAGGTGGCTAAAGTTTGTCTTGATTATGGGCAGCGAGTTCAAAATTCGGTCTTTGAATGTAGTGTAGATGAGGGGCAATTTCGCTTATTAAAGCATAAATTGGAAAAAATCATTGATGCTGATATTGATAATTTACGCTTTTATCGTTTAGGCAAAAATTATAAAAGTAGTATTGAAACTATGGGGAAAGATCTTTCTTATGATGTGGAAGGACCAATGATTATTTGAGCTAGAGATTGATTTATATTTGTTTGTGTTAGAGTGCGAATAGTAAGTTGTTTATAAAACTAAATACAGTTCGCACTCTATTTTTTATATGTTGATAATCTATTTTGATTGATGAGAAGATACTTATAAAAAAGAATAGTGATTTTTCATAGATATGGTGGGAATTTATTCGTTTGCTACTATATGTAGCT # Right flank : TGCTAAACGTCTTAGCTATCTTAGTTTTAATTTCGGTAGTGTAAATAATTTTGTGTAAACACTTTAAGATTATCAGTTACAACTAGTTATAAATCTATACGCGCCTGAGCAAATCCTCGATGAGTTCGCTCAAAGAATTTTGCATTATACTCATTGGCGTAAGAGCACACAAAACGTTCTAACGAAGCTTCATTAGGAAATTGTTCTTTTTTACCTATAGTTCGTTTAAGATGTTTATTAAATTGCTCAATAATATTAGTTGTGTAAATACTTGCTCTAATTGAAGTTGGAAATTCATAATATGTAAATAAATCCGTTATATCAGATAATATTCCTTGTAACTTAGGATAGATAGGTTGCCAAGTCGTTAAAAAAATTCCTAGTATTGACGTTGCTTGTTCGTAAGAGGTGGCTTGATATATCATCTTTAATTCCCTCATAATAACAGCTAAATCCTTGCGACGTATTAATTTTTGAATATGTCGAAGAATATGAACCCA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTCTTATACATGTGTGTAAGTGGATTGAAGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.62%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.10,-0.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 258-1082 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMZQ01000022.1 Veillonella sp. R32 contig_22, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 258 30 100.0 35 .............................. TTATGTTGGCAGGTCAAGAAGGGATGTCAGGTCTA 323 30 100.0 36 .............................. GATAGTATGACTTTGTTTTCAAGGTGTACCACCTCC 389 30 100.0 36 .............................. GACCGAGAGATATGATGTTTATTGCTGGTAGTCTTG 455 30 96.7 35 .C............................ GAAATACAATTACTACAACGTATTTAAAAATTGAA 520 30 96.7 36 C............................. GCCATAATCCAATGTCCCCGCCGTAGGTAAAATGCC 586 30 100.0 38 .............................. ACGCTACTAAATCGCAAGCAGAAGCATTTAAATTATTA 654 30 96.7 36 .........G.................... ACATGCCCCCTTATGTGATGACATTCCCAGCATAAA 720 30 96.7 36 .........G.................... AGTCAGAGTTAATATTTACGCCAGTTAACTGACTTA 786 30 96.7 36 .........G.................... ATTAATGGCAAATTGGGGCAATAGCATCTTAACTAA 852 30 96.7 37 .........G.................... TTCAACCACGCTCGATAACTCGCAAAAGATAGGGATA 919 30 100.0 37 .............................. TTTTAATAGAAAAGTAAGAAAGAGTAGGGGATGAATA 986 30 93.3 37 ...C........C................. TTTGTCAAGCCACGTTGTATCTTTTGTTTCTTCATAG 1053 30 86.7 0 .C.........AC..........T...... | ========== ====== ====== ====== ============================== ====================================== ================== 13 30 96.9 36 GTCTTATACATGTGTGTAAGTGGATTGAAG # Left flank : CCAAATTGAGTTTTTAGATGCCGGACATAATATCCATTTCTAGAATTACCAGTATTATACCCTTCAACAGCATATTTTTCGTAAGATAAAAATTCTGTTAACTCTGTTTCTAATAATAAATTAATTGTTTTTTCAAGTTCTTTACGAAAAACATCTGTAATAGAAGAATCTGATACTAGAGCTTTAATTAAATCTGTGTTACCATAAGTCATAAGAGAACTGTTTACACAAAATATTTTATACTATCTTAATTTCTAG # Right flank : GTTTTGTTAAAAACAAAAAAGACTTACCTGGTTAATACTAGCCTCAATATTCTCGCTAGTAATTTCAAGGTAAGTCTTTATTTTGTCTAATCGTTTGTAAGTATTAATTCTATCTTATGAAGTTAATTTTGATTTATACGCTCTAAATTAAAATTCAGAAATTCAAAATCTAAATAAAAAAATAGGAATCGAGAATTAGAAGTTTTAAATTTTAAATTTAAAATTTAAAATCAAAGTCAAAATTAAAGTTAAAAATAAAATCGAAATGCAATTCTTATTATTGTGTAATTCTTATGTATTCATTTTATTATTTCAACACAGTACCGGCTACTTTGACAATATGACCATTAGTATGGATATTGCTATTAGTAGGATCTTCATTAGTTAAGTTGGTTATATTGGAATCCTCTGTTACGTTCCAGACAGAATCTTTACTTAATTTCAGCGTAATGGACTGGGCCTGATTATTAGGATTAATAGCGCCAGTTAGGGTAGAGCTA # Questionable array : NO Score: 2.73 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.62, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTATACATGTGTGTAAGTGGATTGAAG # Alternate repeat : GTCTTATACGTGTGTGTAAGTGGATTGAAG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //