Array 1 38374-40747 **** Predicted by CRISPRDetect 2.4 *** >NZ_QJQB01000266.1 Serratia marcescens strain 1283 NODE_312_length_65410_cov_19.061581, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 38374 28 100.0 32 ............................ GAAATTGCTTGTTGACAGCCCTGTTACTTAGG 38434 28 100.0 32 ............................ AACATTGACCCGAAACTAGAGCCGCCATAGCC 38494 28 100.0 32 ............................ AGAATAGCGCCTTTGGATCGCCCGCCGAATCC 38554 28 100.0 32 ............................ GGTGCCAGACGATGACCATTCGAATGCGCAGC 38614 28 100.0 32 ............................ ATCGAAACGGCCTTTATCATGCGGCGCATGAT 38674 28 100.0 32 ............................ TTAGCCCTAACGCCTTCGCTTCCTTGCTCCTG 38734 28 100.0 32 ............................ AACTTCACGCATCCATGAGCGGATCGTCTGGG 38794 28 100.0 32 ............................ AGAAGTCGTTCACGTCCTGCTTGTCGAAACCT 38854 28 100.0 32 ............................ GCTCAGGTGGGCATACTTATTGACCATCTCGA 38914 28 100.0 32 ............................ CCATATGGTTGGTAGCTGTTCGACCCTTCAGC 38974 28 100.0 33 ............................ CGTCGAGTACTGGCATCACTGGGCGCTCTTTCA 39035 28 100.0 32 ............................ GCAAACGCATATTCGACCTCACGGTAAATATC 39095 28 100.0 32 ............................ TTCCTCCAGTTTCGGCTTATAACTTTCCGCCA 39155 28 100.0 32 ............................ CACAGAAGAAACCAGAAAGTCACCGGTAAAGG 39215 28 100.0 32 ............................ TGTGGGACGCGGGGCAGCGCATCAACGATCGC 39275 28 100.0 32 ............................ GTCAACAAAGAGCGCATGAAATCCCTGGGCGT 39335 28 100.0 32 ............................ AAAAGGCACGAGTCAGCAGCCAGCTCCCAGAC 39395 28 100.0 32 ............................ GTTAAGCAGGCGAATATCTTCCATCATACGAA 39455 28 100.0 32 ............................ TCCCCAAGTAATGCTGAGGACAGTGTTTGCGT 39515 28 100.0 32 ............................ ATCGTGTCGCCTTGCATAAACAGCGAAATGTC 39575 28 100.0 33 ............................ TGGTGGAATACCTTGCCTTCCGCCGTCCAATAA 39636 28 100.0 32 ............................ ATTCGACGAGAACGAGCCGCCGCTGTGCTCAA 39696 28 100.0 32 ............................ AGCAGTTATCAGCCAGGTGACACAGTGACCTG 39756 28 100.0 32 ............................ ATCTACTCATCTCCCTCTACGGTGAAGAGGAC 39816 28 100.0 32 ............................ TGCCCCGGTGTCTGCAAACCTTTTACAAATGT 39876 28 100.0 32 ............................ AGCCGTCATCATCCCAGATTTGATAGATTTGC 39936 28 100.0 32 ............................ TTCTATGACAAGACTAACCCTAGACACGGCTC 39996 28 100.0 32 ............................ GTCGACTGGCCGCGGTTCACAGTGACGCGAAT 40056 28 100.0 32 ............................ TTCATGCAGGAAGACTCGAACAGGAGCAGGCA 40116 28 100.0 32 ............................ CTCAACTTCTCAGCGGCACGCGTCGCGTACAT 40176 28 100.0 32 ............................ TTGTACAAGCTGACGTGGAAGCAATGGGTTAC 40236 28 100.0 33 ............................ CATAATGCGCTCAATCTCAAACCACTCGATATT 40297 28 100.0 32 ............................ GGCAGTTCGAAACAGAGCGCCAGTAATTCAAC 40357 28 100.0 32 ............................ TGCGCCTGGATAGCTGCAAGTGCTGCGTCAGT 40417 28 100.0 32 ............................ TGCCTCATCCAGTTTGCAGTACAATTCTAACT 40477 28 96.4 32 .............G.............. AATCCGATGACGTTTCCCGCATCTACGCCCAT 40537 28 100.0 32 ............................ TGATCCAATCCCGCCCGCGCCACCGGCATACT 40597 28 100.0 32 ............................ ATCAGCACGTCGGCCGCGTTCGGGTCGGCGTT 40657 28 100.0 32 ............................ ATGGGAATGATGCCAAAATTTGCCAGTCCGGC 40717 28 96.4 0 ....................A....... | A,A,G [40737,40740,40743] ========== ====== ====== ====== ============================ ================================= ================== 40 28 99.8 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GATCCTGTTTACTACGGCCGCTTCGGTTTTAAACCGGCCGCCGCCTATGGCCTGCATTGTCGCTGGCCGGACACGGAAAGCGCGTTCCAGGTCTACCCGCTGGCGGAAGACGCCCTGAATGGCGTCAGCGGCGAAGTGGCTTTTTCGGCGCCGTTTAATCGTTTTTAACGACCGGCAATAGATACTCCAACGACAGCGGCGGGTGGCTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGTTTGAGCTGGCAATTCAGATCACCTGTGGGGTCTATGCGTCTGAGTGGGACGGATGGTGATACCAAACAGGGAACCTATAATTCCCCCTAAAATGCAAAGATGTCACCTTACCCCGTTCTTGTTTGCCGAACCCTTTTTTGAGTGCCACTTTTAATTGATTGATTTAAAGTCATATTTTTAAACTCTTTGAAAAAGGCTTTTTGAACGGAGATTTCGATTTTCCTCCATCAATCAGCTGATTAGCGCTAATATGCAACG # Right flank : AAAGTAATATGTATTTGATACATTCCGGCAGTGATCAATAAGTGGATGATTTTATTTTTCTGATTGATGAATATTGACTCGGTTGCAACGGATTTCCCTGGAAAAACGTGGTAGAACGGTGGTGTCGTCGGCATTGACATTCATCGCTTGTTATTTATTTTAATTGTAATTATTTCATTATGGATAAGAAATATAACAATGAAAAATACCCTTTCCCCCTCTGAATTAAAAACAATACTGCACTCGAAACGAGCAAACTTGTATTACCTGCAATATTGCCGAGTTTTAGTGAATGGCGGCCGCGTCGAATATGTCACGGACGAAGGAAAGCAGTCTCTTTACTGGAACATCCCTATTGCCAACACTACCGCCATCATGTTGGGAACCGGAACCTCGGTCACGCAGGCTGCAATGCGTGAGTTTGCTCGCGCCGGCGTTTTAGTCGGATTCTGTGGTGGCGGTGGGACACCCCTATTTGCTGCTAACGAAGTGGAAGTCGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 49597-53633 **** Predicted by CRISPRDetect 2.4 *** >NZ_QJQB01000266.1 Serratia marcescens strain 1283 NODE_312_length_65410_cov_19.061581, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 49597 28 100.0 32 ............................ GACTCCGGTCGCCAGCTGTCCAACGAAGAAGC 49657 28 100.0 32 ............................ AACTAAGGATTAACGAAACATGGCTGAATTAT 49717 28 100.0 32 ............................ TGGCCGGTGTGGTGGAACTCGAGCGACGCCAA 49777 28 100.0 32 ............................ TTCTTGATCAGCTTCTCGGCCTTGGTTGGGCT 49837 28 100.0 32 ............................ TTCGCCGTTAACGGCTTTTGGTTCGAACAGAG 49897 28 100.0 32 ............................ GAGGAGAATGGTTTCGACCCTGACGATATTCC 49957 28 100.0 32 ............................ TGCCCGCTCAGCCGCCGGTGCTGCTTTCAGAT 50017 28 100.0 32 ............................ CGCAAACAGCCGCTAACGGCGGTCTGGTGCTG 50077 28 100.0 32 ............................ TCCAGGCTACGCCGCCCTTCCCATAAGCGGAT 50137 28 100.0 32 ............................ CGCCGACACCGGCAGTCATGGAAGCGGATGAA 50197 28 100.0 32 ............................ ACAAAACGCCGGTACGAAAAAGCGCACTGCTT 50257 28 100.0 32 ............................ TCTGACTATCTGTATGACGTGCTTGTCCCCGT 50317 28 100.0 32 ............................ AACGTGCAGATGCGGCCAAGAACTCATCATTT 50377 28 100.0 32 ............................ TGAAGCGCAAAAAAATGCTGGAGTTCATCGAC 50437 28 100.0 32 ............................ TGCAGAGTTGTGATATTGCCTTCTGCAGTGGT 50497 28 100.0 32 ............................ AGGTCAAATAACCCTCCACCCGGCCCCGCGCC 50557 28 100.0 32 ............................ AAGGCAGAATCCGAAGCGATAACCGTGAAGGC 50617 28 100.0 32 ............................ TTAGCCAGGTGATAGCCTGACCTCATCATAGC 50677 28 100.0 32 ............................ TCGAGATCGTCGCCGCCGTCATGGAGCAGGAT 50737 28 100.0 32 ............................ TCCAGCTCGAGACAAGGCTGACCACGTAGCTC 50797 28 100.0 32 ............................ CATAACCATTGATGAATGTTCCATCATCAACC 50857 28 100.0 32 ............................ TGCCAGTACGGTTTAGATATGAAGTTGGCAAT 50917 28 100.0 32 ............................ AGTATCATCTCACCCCTCCGGCTGACGAATAG 50977 28 100.0 33 ............................ AATCTGTCGGCATCCCCATGTTATTTCCATTAA 51038 28 100.0 32 ............................ AGTAAGATTTCCAAACGGCTTAACGCTGAAAC 51098 28 100.0 32 ............................ ATCGCCAGGGCGGTTTGGCGAGCCTCGGCAAA 51158 28 100.0 32 ............................ GTCCAGGCATTCGCTCCGCGTGCTGGGTGCCA 51218 28 100.0 32 ............................ AGCACTTCAGGCTTGCAGTTGACGCGCACTGA 51278 28 100.0 32 ............................ TGATGTGCTCTCAGGACGGACGCACACACAAG 51338 28 100.0 33 ............................ CCTACGGTTCCAGCACACTGGAGCAGCGGGCAG 51399 28 100.0 32 ............................ TCAAACACAACGGCATTTCCCGTTTGCTGGCA 51459 28 100.0 32 ............................ ATCCAAGAATATGGCGACCCCTCGCATAACAT 51519 28 100.0 19 ............................ GACCGCAAAGGCAATATGC Deletion [51566] 51566 28 82.1 32 .GC.G...T.A................. TCGAAAGCCGTCTGACCCGGCTGGAGGAAATT T [51575] 51627 28 100.0 32 ............................ AGCCAATCTTGTCGACCACCTGGCGGGCGTTG 51687 28 100.0 32 ............................ GGTTACATCGACGACTTTATCCCGAGTTACGA 51747 28 100.0 32 ............................ TTGTCGATTAGGACATTCATCGGCTTTTTGCA 51807 28 100.0 32 ............................ ACGCCGATTGCCGGGGAACTGATAGATGCGCT 51867 28 100.0 32 ............................ AGCTGACCTTCGCGTAACCGTCGGCATTCTCC 51927 28 100.0 32 ............................ TGAACCGCTTAACAAAAGGCGAGCTGGTGGAG 51987 28 100.0 32 ............................ TTATGCACATAAAAGGTCACTGCCTCCCCAGA 52047 28 100.0 32 ............................ TGCCTTAATTCGGAAGTATTCACCACCCAACG 52107 28 100.0 32 ............................ GAAAAACCGCAGGTGGTGCAGGAGCAGCAGAA 52167 28 100.0 32 ............................ CGTAGGGCGCGGTGGGTGTTAGTTGTCAACGC 52227 28 100.0 32 ............................ GGCAAACATTCATACTGAGGTGGCAATCCTTG 52287 28 100.0 32 ............................ AGCGTTGGCGCGGCGATGAAAAAGGATGTTCC 52347 28 100.0 32 ............................ TTAACTGCATCGTATCGGCGCTCGACGTCATG 52407 28 100.0 32 ............................ CTCGTACAGTTGGCGCGCTAACTCGACCTCAT 52467 28 100.0 32 ............................ GGAAGGTGCCGGGCGGATCTGCGCCATCGGTA 52527 28 100.0 32 ............................ CGCTCCACTCTTCGAGGCATGTCAGCAACCAG 52587 28 100.0 32 ............................ TACGAATCGAATGGACTGGATAGCGCGCCTAC 52647 28 100.0 32 ............................ AAAACCATCGCAGAGCAGTTTCATACCTCAAA 52707 28 100.0 32 ............................ CCTGCCAGTGCAATCCGATATTCACCAATGAA 52767 28 100.0 32 ............................ TGCGGATTGATGCGGTTGAGCTGCACCCGGTA 52827 28 100.0 32 ............................ AAAATCTACCGATTGCAGTACAAGCGGGGATA 52887 28 100.0 32 ............................ AACCAGCCCACGACGCTGAAATGTGGAATGTT 52947 28 100.0 32 ............................ ACAAAGGCGCATTATTCAGGTTGATGCTCATT 53007 28 100.0 32 ............................ AAACAACGCCGACGCCGTTATGATGGCTTATG 53067 28 100.0 32 ............................ AGCAATGGCTGCAGGGTAACGGGAAAACAGGG 53127 28 100.0 32 ............................ TGCAGGGGTCGCTAATGATTCGTGATCTGACC 53187 28 100.0 32 ............................ GGCACCTTTGACGGACGAGTTATCGCACTGGG 53247 28 96.4 32 ....................T....... TTGAAAACTTCCGCAATGGGCAGTTGCGGGCA 53307 28 100.0 32 ............................ AGCAGCTGCGTGCGGCCTTCACCTGCCAGGGT 53367 28 96.4 32 .............C.............. TGCGCCGCCTGGCGGAGAGCCTGCGCGCCGAC 53427 28 96.4 32 .............C.............. CACGTTTCCTAAATCGGCGCCTTGCTGGATGA 53487 28 96.4 32 .............C.............. TGACGGCTGTTTTCCGTGTAATCGGTATTGCG 53547 28 96.4 32 ..........................C. TTCGGCGGCCGGCCGCGAGCGTCTAGCCATCA 53607 27 82.1 0 .........T...C.A....-..T.... | ========== ====== ====== ====== ============================ ================================= ================== 68 28 99.2 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : AGCGCTGACGGCGCTGGGGGGATTCGACTGGATGAAAGGGTTACGGGACTATACCGACCTATCGCTCATCCAGGCTGTGCCTGCTGAGACGGCGTTTCGTACCGTCAGCAGAGTTCAGGTAAAGAGTAGCGTTGAGCGTATACGCCGCCGAGCCGTCAGTAAAGGTTGGCTGACTGAAGAACAGGCACGGGAAAGAATACCGATGGCGAACGAGCAGCGAACCTTATTGCCTTTTATTGCCTTGAAGAGTCTCTCCACCGGGCAACACTTCCGCTTGTTCCTGAAACAGGGTCAATTACAGGAAAGGCCAACGCCGGGCGTTTTTAGTTTTTATGGGTTGAGTGCCTCCGCTACGGTACCTTGGTTTTAACCCTCTTTTTTCGTTCAGAGGTAACACATTGATTTTGTTGCCTCTGAACGGTATATGAAAAATTAGGGTTAAACCGAGGGATTTGACTGTTGTTCTTTAATAATCAGTTTGTTAGAGACTATTTTGCTCA # Right flank : ATAGAAGGGATAAAACTTTACCGACACCTGTTAACCAGGAAGCAAATACTCCAACGACAGCGGCGGGTGACTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGCTTGACGCGGTATTCCAGCTTCAGCGCCGTTGAGCGATCCCCCACCTGGCAGTGAAACGCCAACGTCAATTCCCCTTTGCCGCGCAGCGCCTTGGCGCCTTTGCCGGCCTGATGCTGCGCCAGGCGGCGCGCCACGTCGGTGGTGATGCCGGTATACAGCATGCCGCTCGGTAAACGCAGCATGTAGAGGTGCCAGAGAGTGGGGAAAGTGTCGGTCATCGTACGCCGTTTCGGTGGCCAGGGTCGGCGTATGATGGCATGTTCGCCATCACAATCCCATCCCCGGCCGCCGGTGCCCTACCGCTTTACCCCTTTTTACCCGCCAGCTCGAAGCGCGGCGAGACGATGCCGTACAGCGTCCAGCCGAGGAAGGTGGCGATGGCGCCCCACATCAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //