Array 1 648043-647683 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP043404.1 Bacillus safensis strain PgKB20 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 648042 32 100.0 33 ................................ GCCTTTTTAGCTAAGTATTCAAACGGCGCTTCG 647977 32 100.0 34 ................................ TTATCCATTTTTTATTCAAATCAAAACCTCCCCC 647911 32 100.0 35 ................................ TCAAGGTAATATCTCGCATGATAATGCCGGATGCG 647844 32 100.0 34 ................................ TCGTTTGGATGGACGAAAAGGACAGGTTCAAATA 647778 32 93.8 33 .........A..........A........... GGTGAATGGTGGGAAAAGACAGGAAAGCCTGGT 647713 31 68.8 0 A........A....A.A...A.A.-..C.C.G | ========== ====== ====== ====== ================================ =================================== ================== 6 32 93.8 34 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : GGATTGAAATTTGAGCGTGTTTCATCCAGCCTTTCAGATCATAGGTCGCACTCTACACGAGTGCGTGGATTGAAATGTTAGCATTCCAAGATTTTTATCTAGCGCAATTGTCGCACTCTATATGAGTGCGTGGATTGAAATATCGTTGATTTAACCGGGGTGTCACCGTATTGGTCGTCGCACTCAACATGAGTGGGTGGATTAATAATTGCGAAAACATAACTCTGCCTCCTGCCTCAGTAGTCATGAATCTAAGTGAATTCAATTGTTGCTGAAATATAAAGAAGTATGATTAACAAGTTTCAATAGATTTCATACTAAGAAAAAGTCGGTGCGAATGTGAGGTGAACATAAAATCCCTGGAACATTCGCACCGTTTCATTCGACAAAAATGAGAAAAAATGTATATTTTTAGGGACGAAAACTTAATTCCTATATAGAAAATTAAGGGTTTTGACGATCATTCCCTAAAAAATGTTATAATTAGGGCGGAAATCGCA # Right flank : TTTCTGCGAATTACATAAATTCAAATATCTATCCACCTAAATCCAAGCTCTACACAACAAAAAAAGACTCGCTCACACAGAGCCGAGTCTTAATTTTTTTTGCAGTTTTTCTTCACTGAAAATCCAGCCGGTATAGGAATTTTTGATTTGGTGGTCCATGTCGATATGGCAGATCGCGACAAAAGGATAATGACCTTTGCTGCGGTAGCGTAAATCAATGAACCGCACCTCATAATGATCCTTGTATTTATCCACTTCCCACCGGTAGACAGGGGAGAAGGAGAGAAAGGCTGAAATGTTTTCATCTTGTTTGGCAATTTTCATAATTTCAGTATCAGGGACCGGCACACGGTTAAAGGTGTCTAAAATGACGACTTCTCCATTCATGCTGCGCCCAACATGGAAAGAGGATTTACATTTCACAGCAATGCGCCATTGTCTGAACTTCATTGTAGGCGAAATAATAATCTCTTCAATTTCATCGAATCGTGCACGCAGCT # Questionable array : NO Score: 9.00 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 648697-648334 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP043404.1 Bacillus safensis strain PgKB20 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 648696 32 100.0 35 ................................ ATATCACGCTCAAATGCGTATCTAGTCGCATCAAT 648629 32 100.0 33 ................................ AATCGTTTGGTGTGAGCCTATATAACTGCCCGT 648564 32 100.0 34 ................................ TTGAGCGTGTTTCATCCAGCCTTTCAGATCATAG 648498 32 93.8 33 ...........C.C.................. GTTAGCATTCCAAGATTTTTATCTAGCGCAATT 648433 32 100.0 35 ................................ ATCGTTGATTTAACCGGGGTGTCACCGTATTGGTC 648366 32 87.5 0 .........A.C.......G.......A.... | T [648337] ========== ====== ====== ====== ================================ =================================== ================== 6 32 96.9 34 GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Left flank : TGCCTGAGACGATAGGAGAAGCATTCAAAGTGGATGTGATGACACCACATCATTCAGACTATAACAGCGTCAAGCTAGACAAGATGAACAAAGGGGGAAGTGTTCCAGCCCCTCGAGACGATGACTCACCGACACCGATTCATTTCTTAACGGTGGTCAACGGCCGCTTTCAACTTCTATTGAAAACAAAAAAGAATCTACCAGAAGAAGCAGAATGGCTCGAACTCGCCAAAACCATCTTACTAGGAGCTTTAGAACACGAAGGAATCGGTGCTAAAACAAATGCAGGTTATGGAAGACTTAAAATGGACGACGACATTTCATGAAACTTGGTGCGAATGTGAGGTGAACATAAAATCCCTGGAACATTCGCACCGTTTCATTCGACAAAAATGAGAAAAAATGTATATTTTTGAGTGTGAAAACAAAATTCTATATAGAAACTTGAGGATTTTAACGATCATTTCCTAAAAAATGTTATAATTAAGGCGGAAATCGCA # Right flank : TGCGAAAACATAACTCTGCCTCCTGCCTCAGTAGTCATGAATCTAAGTGAATTCAATTGTTGCTGAAATATAAAGAAGTATGATTAACAAGTTTCAATAGATTTCATACTAAGAAAAAGTCGGTGCGAATGTGAGGTGAACATAAAATCCCTGGAACATTCGCACCGTTTCATTCGACAAAAATGAGAAAAAATGTATATTTTTAGGGACGAAAACTTAATTCCTATATAGAAAATTAAGGGTTTTGACGATCATTCCCTAAAAAATGTTATAATTAGGGCGGAAATCGCAGTCGCACTCTACATGAGTGCGTGGATTGAAATGCCTTTTTAGCTAAGTATTCAAACGGCGCTTCGGTCGCACTCTACATGAGTGCGTGGATTGAAATTTATCCATTTTTTATTCAAATCAAAACCTCCCCCGTCGCACTCTACATGAGTGCGTGGATTGAAATTCAAGGTAATATCTCGCATGATAATGCCGGATGCGGTCGCACTCTA # Questionable array : NO Score: 9.11 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 656743-656310 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP043404.1 Bacillus safensis strain PgKB20 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 656742 32 100.0 36 ................................ TGTGCTGCACATTGATTTTCTTCTGGCGCACTTCAA 656674 32 93.8 35 ..............A............T.... CAGTCGAACAGGTTCACATCCATATCTGTCATGAA 656607 32 100.0 34 ................................ TCGTCCATTAATGGCTGTTCTGCGAAAAATCCCA 656541 32 100.0 35 ................................ AGGCTTTACGCCAAACAATTCCTTGCTGTGCTCTT 656474 32 100.0 35 ................................ CATCTACTGCAAGCTTGTTTGCTTTTTGGAATGCC 656407 32 96.9 34 ...........C.................... ACTTTGTGGCGGCTTTTGACCCGCATTTTCCCAT 656341 32 90.6 0 .......................AT..T.... | ========== ====== ====== ====== ================================ ==================================== ================== 7 32 97.3 35 GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Left flank : ATGAAAGAAATAGCCGATCAGTTCGGCGAAACAAGACAAAACATCTCAAACATTCACAAAAAAGCACTCAACAAACTAAAAGAAGAAACAGGGGGAGATGTCCGTGCACGAAGACAAAATGACCAATGGAGAAATGGAAGAACTCATTGAAACCTTCACACCCATGATCAAAAAGAAACTACAAAACACGGCATATCAAGAAAGAGAAGACCTCGAACAAGAACTCTATATCAAACTCATCGAAAAAATAGACCGGCTGATTTACCAAGAAGGACCTGGATTTTGGGAGTTTATTGTGGAATATATGACGAAGTTGTAAGAGAAGCTGATGGTGCGAATGTGAGATGAACATAAAATCCCCGGGACATTCGCACCTTTTTATTCGACAAAAATGAGAAAAAATGTATATTTTATGAAGGGGAAAATAAAATTCTATATTGAAATTTGTGGATTTTGACTATTATTTCCTAAAAAATGTTACAATTAGGGCGGAAATCGCA # Right flank : GATTGTGTCTTAAACGGTATGACATTCTTAGAGATCATGATCTTACAACACCCTCTTTCAGATACAAAAGTCATCAAAATAGACTGTTCATATGTATAGTGAAAACATGACTCATTGCAGTCATGTTTTTTTCTTCTTCTTTTTCCTAAATAAACCTTAAAAAATCTCAAAATAAGTCGAAATGAAAAGTAGTCATTTAGATTCAAATTTTATCCATTCGTAGTGAATGATGAAGGAGGAATTGGTTTGGGTGAAACGGAGCGAACTGGTAAAGTTGAGCAGCTGATCTTAGAGAATTATCAAAGATTAAACAGCATGATATCAGAAGAAGTGGACTTTGCTTCTAATCATGGCGGGCTGACAGGAGATTCTAGAGAAGTGATGTGGTTGGAGTTTTTTCGGAAAATCATTCCTAAAAAATATTCATTAGCACAAGGTGTCATCATTATTGACTCAGAAGGAAATCATTCTAACGAAGTCGATATTGCCGTATTTGATGA # Questionable array : NO Score: 9.12 # Score Detail : 1:0, 2:3, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //