Array 1 5710-4075 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUEL01000046.1 Salinivibrio kushneri strain ML277 scaffold46.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================================================================================================================= ================== 5709 28 100.0 32 ............................ AACTGGAACCTAGTTACACAATACAAATTAAA 5649 28 100.0 32 ............................ GTTTTGGAGGAATGACAAATGCAGTATAAACC 5589 28 100.0 32 ............................ AAATGAAATTGACGCTAAAACTAAAAACAGTG 5529 28 100.0 32 ............................ AACCGATGCCGCAGGCGCGCCAGGGTTTGCCA 5469 28 100.0 33 ............................ CTGTTCGTCATCGTGCACACCTGCGGTCTTGCG 5408 28 100.0 32 ............................ GGTCCACCAAATTTCGCGACGCAGTTTGAGCG 5348 28 100.0 32 ............................ GTGCACCCGAACCACGTTTATCAACGATGTTT 5288 28 100.0 32 ............................ CTCTACCCCCGGTATCTCACAGTCGCACTCTA 5228 28 100.0 32 ............................ AAGCGTTTGTTCAGCATGATGCCGATGGTGAT 5168 28 100.0 32 ............................ GCTCTCTCGTTCTGTGCGATGGCTGGCGGTAT 5108 28 100.0 32 ............................ GTCTAACGCGTTTAGGAAGCCTGACAAGGACA 5048 28 100.0 33 ............................ CTGTCGCTGTGTTGCATTCATTTCAATGCCTTA 4987 28 100.0 32 ............................ CTCGAGCTGTTCGAGATCGTCACCAATACAGG 4927 28 100.0 32 ............................ GTCAGCGCTTTTTATAAATGTGCCGAGTTTCG 4867 28 100.0 32 ............................ ATTTTGCCCGGTTGAGTCTAGCCACTGGTTAC 4807 28 96.4 32 .............C.............. CACGGCATCGACACCCGACAAGCATCTATCGC 4747 28 96.4 32 .............C.............. GTCAATTGCAGTGCGGCGAAACACCAAATGAC 4687 28 96.4 32 .............C.............. CGCATCAGCTCACAGCCAAGGAACTGGCCACG 4627 28 96.4 32 .............C.............. CTCAACCAATGAGGTTTCCACGGCTTTACCGC 4567 28 96.4 33 .............C.............. ATGCCATCACTGACGCCATCACCAGTGCTGGAT 4506 28 96.4 32 .............C.............. TCATCGCGTGTATAATCAAAGCCGGAGCGGTT 4446 28 92.9 32 ...G.........C.............. GTGTTGCGACTGTCACTACCAAACGTCTGATT 4386 28 92.9 32 ...G.........C.............. ATGCCGACAAGGCGTCCACTCAGAGCGTCCAC 4326 28 100.0 32 ............................ TGGTTATCATCGAGGACACGGCGGAAATCCAG 4266 28 82.1 135 ............G........G...GTG ACACAAGCCCCAGCACGGTGTTGGATAGATGCACATTGCCAACGGGCGCCTGTCACGATCGAGGTTAATCGTTGGCCTCAATGTCGGATGGCGCAGTGCAAATCACACCAAGCTTGTATGATCGAGTTGGCGTTT 4103 28 82.1 0 ..C...CTA....C.............. | G [4099] ========== ====== ====== ====== ============================ ======================================================================================================================================= ================== 26 28 97.2 36 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : TTGTCTTGGGGTCCGTCGCTCATAACGTTTTACCTTACCAAGTTTGACTTCTTCAGATGCAATCAGCGCCTCTTGCACAAAGCTGTAGGGTAAATCAGGGTTCTCAGTCATGATTTTCCCAATTTTTGCCCAGTACTCAATTTGCTTGGGCACGGAGCGCATTTCAGCTTCTGCATGCACTTTTACATCTGACACAAATTCATCATCTAACCGTACACTGGTTGGCATGATTCATTACCTCGTTTATAAATCTTCACAAGTCACTATGCGACAAAGTGTCGCGCCTTGCAACATATTTAGAACTGACACATCTGGCGTGACTTAAGACGGCTCTGCTTCAACATATGTGATAAGTTGATACCCTTGCGACCCTTCTTTTTTGGCCGTTCAAAAATAAGCAATAAATACAGCTAGTTACGGCAGGCCATTTTTAACAAGGGTAAAAGACGATTTTTATCCTAACGGCCTGTTGTCACTGACGATTATTACGTTATTCTATT # Right flank : AAGCTTTGCAGGTGTTCCGCTGCTTTGAGCTTTCCTCCTTACCTCTATTTCTCTTACCGTTGACACCTGTCTGGGTTTTTCCTAGAAATGACTAATTTGGCATGCTTCTAGGTGGTTAAACTTTATGCCCTGACTTTAATCGTTGAATATTTTCTATCGATCAATCAAAAACTAATCGACGGGGAGACTACTCCTGTCTAGTTCTTTTTAACCGGTGGCGAGAATCTATTCTACGATAAGAAGGTAGCGATTTTTGGTCGATGTTGTCTGTTGTTGACTGGCAGGAGTTGGGTATGAATATCAATAACACCATGAAGTTAGTGTTTTTTATAATTGGGGCAGGGATTGTCGTTAGTTTTATAACTATTATTCAACTCAACGGCCTAATGAATAAAGTCGATGAGATGGCTCAGGTGCGATATGAATCGTATCAAACGGCTGATGAATTAAGGCAAAGCTCTGATGACTTGACCCGCTTAGGAAGAACGTATGTGGTGACG # Questionable array : NO Score: 5.76 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:-0.35, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 8112-6942 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUEL01000046.1 Salinivibrio kushneri strain ML277 scaffold46.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 8111 28 100.0 32 ............................ ACAAACTGAAAACCTCCCCACTAGTTAAACCC 8051 28 100.0 33 ............................ TGAGTGGTCTGCAGTCTTTGAATTGGTCGATTT 7990 28 100.0 32 ............................ ATGCCAACTTTAATAATGACTCGTAAAATCAA 7930 28 100.0 32 ............................ TCAAAGAGACCGCCAAAGCGTGGGGCATGTCA 7870 28 100.0 32 ............................ GCTCTCTCGTTCTGTGCGATGGCTGGCGGTAT 7810 28 100.0 32 ............................ GTTACCGACGGCATCAACGGCCATCGACAAAA 7750 28 100.0 32 ............................ GCAATCGCAGAGACTGCGAGATATCGCCCTCA 7690 28 100.0 32 ............................ TGCGAAAAGTACGGCTCGATGCTTTCGCCGTT 7630 28 100.0 32 ............................ TTTCCCACCTCCCTCGATATATTGAAAAAGCT 7570 28 96.4 32 .................T.......... GTCCAGCCGCGTGAGTGGGACGAGAACCGCGG 7510 28 100.0 32 ............................ CGCTGGCGCGACAATATCAATGCTTTTACCGT 7450 28 100.0 32 ............................ AGCCATGATTGCTCTCGCTGTTTGTCTTTTGG 7390 28 100.0 33 ............................ CAACGAATCGGCGAAATTGACGCGCACCTGGCC 7329 28 100.0 32 ............................ TGAATGCTTATGAAAGTAGGACTGGCGGAACA 7269 28 100.0 32 ............................ AGCAAAAACATAGCCCGTGCCAGCCAGCAAAA 7209 28 100.0 32 ............................ CTACGTCACCACACACCAAGCAACGTACCGAC 7149 28 100.0 32 ............................ GTTTTCAAACGCGACCATCGCCGCGAGCACTG 7089 28 100.0 32 ............................ GTTCGTGCCATTTTTTCGCGCCCGAAGCGGTG 7029 28 100.0 32 ............................ GATAACCTACGACTTTAAATCACAGGTCACTT 6969 28 85.7 0 .....................G...GTG | ========== ====== ====== ====== ============================ ================================= ================== 20 28 99.1 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : CTGTCACTGTTGTCACTTTTTGGCTGATTTAAGTTTGTACTGTGTCTTACAATGGCTACGCATCACGTGCCTCGAACGCAGGGCGGTGTGTTTAGTTTTGCGCCCGCGAGTCCGTTCACGCCATACTTTGAAGCTCCGCGGTTTTAATTCACGTCGCATTAACGCAATCACATCGTCTTGGCGTAGGCCATAGAGTGCTTCAATCGCCTCAAACGGGGTTCTATCTTCCCACGCCATTTCTATAATTCGGTCAATCTCTCCCGGTTGTTCGTTCAATGCCATGTCGGTCTCCTTGTACTGGTGGCCAATAATACGCGTAGAGTCGGAAAAACCGATCAGCGTGTTCCTTCTAACCCATCAATGCTGTTACCCTTGTTTTTGGGCTCTTTAAAAATAAACAGCAAATACAGATAGTTACGGAAAGCCATTTTTAACAAGGGTAAAAGATGATGTTTATCCTAACGGCCTGTTGTCACTGACAATTATTACGTTATTCTATT # Right flank : ACACAAGCCCCAGCACGATGTTGGATAGGGGGACATTGCCAACGGGCGCCTGTCACGATCAGGGGTTAATAGTTGGCTCCGATGTCGGATGGCGCGCGGCGAAAGTCATACCAAGTTTGCACGATCGAGTTGGCGCTTATGCCGACCTACGCGAACTTTAACGTCGGTGGTGCCATTGGCGACCGAGACACAAGCCCCAGCACGGTGTTGGATAGATGCACATTGCCAACGGGCGCCTGTCACGATCGAGGTTAATCGTTGGCCTCAATGTCGGAGGCGCCAGTTGCACTGCGCGCGGTGCAAATCACACCAAGCTTGTACGATCGAGTTAGCGCTTGTCCGACCTACGCACAGGCAGCTTATGAAGAGAACGAGATCTCGTTGGGTTACGTGTTCATTTACCGTCGCTAGAGTCGATTCGGCGGTGCACCAATGATTTTTAAATCCGCTTTTCTGCGCTTTTTCATCGTCGCGTAGAAATTCTCGTGCGAGCTAATATT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //