Array 1 162913-160887 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSMO01000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SJTUF10112 Scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 162912 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 162851 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 162790 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 162729 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 162668 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 162607 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 162546 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 162484 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 162423 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 162362 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 162301 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 162240 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 162179 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 162118 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 162057 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 161996 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 161935 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 161874 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 161813 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 161752 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 161691 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 161630 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 161568 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 161465 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 161404 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 161343 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 161282 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 161221 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 161160 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 161099 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 161038 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 160977 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 160916 29 96.6 0 A............................ | A [160889] ========== ====== ====== ====== ============================= ========================================================================== ================== 33 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 180537-179044 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSMO01000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SJTUF10112 Scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 180536 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 180475 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 180414 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 180353 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 180292 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 180231 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 180170 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 180109 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 180048 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 179987 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 179926 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 179865 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 179804 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 179743 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 179682 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 179621 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 179559 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 179498 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 179437 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 179376 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 179315 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 179254 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 179193 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 179132 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 179071 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //