Array 1 252993-254972 **** Predicted by CRISPRDetect 2.4 *** >NZ_NQWS01000011.1 Salmonella enterica subsp. enterica serovar Albany strain NCTR177 NCTR_177_contig_13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 252993 29 100.0 32 ............................. GATATGGGGCTTGATCTTGATTTATTTAATAC 253054 29 100.0 32 ............................. ACAAAAAAGACGAAACCAAAATCGACGCCGCG 253115 29 100.0 32 ............................. CCGTCATGGCGGATATTCGTCTGATTGGCGAC 253176 29 100.0 32 ............................. GGGATTGCGGGAATTAGTATTAAATCCGGCGT 253237 29 100.0 32 ............................. GAATTGCGGGAATTAATATTAAATCTGGCGTC 253298 29 100.0 32 ............................. ATAATCAGGTCGTTAATATTTTTGGTCGCCGC 253359 29 100.0 32 ............................. CCCACGCGGCACAGCTGGCAGAGGACGAAATG 253420 29 100.0 32 ............................. CGCTGGTGTACGACATCGCCGACATGATCAAA 253481 29 100.0 32 ............................. CGCCTCGCAAAACTGGTCGGGGTTTTTCCCCA 253542 29 100.0 32 ............................. TTGCGTCAGGTCGTCGTTTTTTGAGAACGCCA 253603 29 100.0 32 ............................. CTAAATAAAACCTGTAATTGCTCCCAATCGTA 253664 29 100.0 32 ............................. AGGGGCAGCTCCTGGTCGATGAGGTTCTTGAG 253725 29 100.0 32 ............................. CCGTCGGCCTGACAGCCACAGCAGTCAATACA 253786 29 96.6 32 ............................A TGCTGGTCACGCCCGGTTTAGCGGGTAAATTC 253847 29 100.0 32 ............................. TCACGGGGTCCGACGCGGATGTAATGAGTTAT 253908 29 100.0 32 ............................. GCGTTGGCGTCGCCCAACACCATCGCCGGGGC 253969 29 100.0 32 ............................. TTACTGGAACTGTCACTATACGTGGAACGTCG 254030 29 100.0 32 ............................. ACAACCGTCGTTTTCTCCACGACGTCGAGAAG 254091 29 100.0 32 ............................. ATCTCCGGCACGTGCGATAACGGGTCTGATTA 254152 29 100.0 32 ............................. CGACCCAGCGTTACGCGGTAATATTTCGCACC 254213 29 100.0 32 ............................. GACGTTGATTTACACGGCAAAGATACGGAATC 254274 29 100.0 32 ............................. GTACTGGCCTATTCCACATACAGTGGCACGCG 254335 29 100.0 32 ............................. TAGCTTAATCACGGTGCGTCCCTCCTCCGTTC 254396 29 96.6 32 ...C......................... ACCTGATTGAGGTAATCATGAAAAAAATATTA 254457 29 100.0 32 ............................. GCTGGAGCGCAACTGCCAGTGACTACAGAAGC 254518 29 96.6 32 ............T................ AGCACGCCACAGCGCGTAACTGTCGCAATAGA 254579 29 100.0 32 ............................. CGTCTTATCAGGATACCTGCAAACAGATGTTG 254640 29 100.0 32 ............................. ACCCCCCATTTACTGTTATTGTAGGGATAGCC 254701 29 100.0 32 ............................. CGAGCGCGGAATGATTTTTAACGCTGAGATGG 254762 29 100.0 32 ............................. GCTGGAATGGTACGGCTTACCAACTTCCCTGA 254823 29 100.0 32 ............................. TGTTTGCCATTCTCTCGCGTGCTGAGGGAGAC 254884 29 100.0 32 ............................. ATTTGCGTCAGACTACCGACAGGGGCTGGTAT 254945 28 93.1 0 .......................-.G... | ========== ====== ====== ====== ============================= ================================ ================== 33 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGATGATAAAAAATAGTTTATAAACAACAATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 271530-274428 **** Predicted by CRISPRDetect 2.4 *** >NZ_NQWS01000011.1 Salmonella enterica subsp. enterica serovar Albany strain NCTR177 NCTR_177_contig_13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 271530 29 100.0 32 ............................. CGAACACTGGCTTAAGTGCCATTGCTGGAAGT 271591 29 100.0 32 ............................. CGTCATCATACCAACTGCTGGTCGATACGATT 271652 29 100.0 32 ............................. ATAACAGCGGCCACAATATAAACAATGGTTAA 271713 29 100.0 32 ............................. CATTCTGACTAACGCCACCACAATTGCCGCTA 271774 29 100.0 32 ............................. ATGTCAGCGCAGGAGATGGCGGCGACTGCTGG 271835 29 100.0 32 ............................. CGCCGCCCCCATCACAGCACCCCGGCCAGCTT 271896 29 100.0 32 ............................. GTCTTGAGCAGTGGGCGCAAGAGTCTGGTTAT 271957 29 100.0 32 ............................. GAATCGCGGGAATTAATATTAAATCTGGCGTC 272018 29 100.0 32 ............................. CGGGCATTTGCCCGCTTTTCATTACAGTGATT 272079 29 100.0 32 ............................. TTCTGGCAATGGTCTTATTTTTTGAGGTTTAG 272140 29 100.0 32 ............................. GTCACGTGCGGTTATCCTGCAATTTCTGACGA 272201 29 100.0 32 ............................. GTTTACAGCCTGAGCAATGCCGGAATGAATGA 272262 29 100.0 32 ............................. TATTTCAATATTCATTCATTGCAGGCGTAGGA 272323 29 100.0 32 ............................. ACGCGAGCGCCGGTAGTCAGCACATCATTAAA 272384 29 100.0 32 ............................. CATAACCATAACCAAATTGGGTTAATGGCGCC 272445 29 100.0 32 ............................. CCAGCCTCTTCAACGAGTTCGAGAAACGCGGT 272506 29 100.0 32 ............................. TCTGGTCGTCCGAGGCTGAGGCCGAGTGGCTG 272567 29 100.0 32 ............................. CGCACCTGCCGGGACATGACCCTGCCGGAGCT 272628 29 100.0 32 ............................. GCGTTTAAACGCTTTTTTGATATCGGCTTCAG 272689 29 100.0 32 ............................. TTAGAGTTGAAATTGATGGCATTGAACTTGGC 272750 29 100.0 32 ............................. TACCAAAGATACCGCCGCGCTGCTTTCTGGTA 272811 29 100.0 32 ............................. GCATTGCCTGGCTGAGTCCGTCGCTAACTGCG 272872 29 100.0 32 ............................. TAGCTTCTTTGTTCGTGCGGGGCGGATTATGC 272933 29 100.0 32 ............................. CATAATTTACGCGGCCCTTTTTTGGTCACCCA 272994 29 100.0 32 ............................. CGAATAAACAGGCCTGTAACGCGCTCCAGCGT 273055 29 100.0 32 ............................. GCTCCGCCTTGAAAATAACATCTGACATTGTG 273116 29 100.0 32 ............................. TGCCGGGGTTCTGCAGTCTCTATTTTCCTCGC 273177 29 100.0 32 ............................. GAGCTGATAGAGGCCAACCCGGACGCAAAAAT 273238 29 100.0 32 ............................. TGCACATACATCCTCACTTACTGGGTCTGACA 273299 29 100.0 32 ............................. AGCTGTTCGGCGTGGCGGCGTAGCGCCTCGGG 273360 29 100.0 32 ............................. CTGCTGATGTAATGGCCGACGCAGATGCTGTG 273421 29 100.0 32 ............................. AAAGTTGACACAATAGCGAAATCAATTACTGA 273482 29 100.0 33 ............................. TTGTTGCAGGCGGGAGAACGCAGCGCGTACCCC 273544 29 100.0 32 ............................. GCGACCTGCTCGACAGCATTCAGTTTGTTGTT 273605 29 100.0 32 ............................. TGATCCAGCCACTTAAACAAAATGATCCACAT 273666 29 100.0 32 ............................. GGCCACACCGACAACCGCAACGGATACAAACA 273727 29 100.0 32 ............................. CAGCCGGAACGACAGCAGCGACAGCGACGTGG 273788 29 100.0 32 ............................. ATATTATAAAAAAAATAATAACCTCTCAGAAA 273849 29 100.0 32 ............................. GTTTGGTTCATCCTGAACGGCGTTCGTGGGGA 273910 29 100.0 32 ............................. CGCCCGCATGATGGCGCGGTTACTTAATGTCA 273971 29 100.0 33 ............................. CGGTATGCTATTGACAGGAGTGAGATTTTAGAT 274033 29 100.0 32 ............................. AATCTTCAGAGGACTCAGATCCTGATTACGTT 274094 29 96.6 32 ............T................ TTGATTACAGTAAAATTTACGTTTATTCAGTC 274155 29 100.0 32 ............................. AAATCTCCACCGTGGATATTTCGGTTATTGGT 274216 29 100.0 32 ............................. ATGTGCGCATTATTGCTAACCATAGAGACTCA 274277 29 100.0 32 ............................. ATATTTTGGCAACTCGTCGTACATTATCGCCA 274338 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 274399 29 100.0 0 ............................. | A [274426] ========== ====== ====== ====== ============================= ================================= ================== 48 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGCACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCTCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //