Array 1 1146-2253 **** Predicted by CRISPRDetect 2.4 *** >NZ_RXDD01000023.1 Pseudomonas aeruginosa strain Jp100 IPC750_23.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1146 28 100.0 32 ............................ AAGCCTGCCCCTACGGACTGCACATGCTCTAT 1206 28 100.0 32 ............................ CTTGGTGCAGGCGTCGCGCAGGGCATCAACCA 1266 28 100.0 32 ............................ TGGGAAACGGCAGTGTCGATCTGCGCCGGCGT 1326 28 100.0 32 ............................ TCCCTATGCAGGAAAAGATCAAACGGTTTGTC 1386 28 100.0 32 ............................ AGTCCGGATACTTGGCGCCCACCAGTTCGAGT 1446 28 100.0 32 ............................ TTTGAGCAGTGGGGCGGTGGTCTGTATCGAGG 1506 28 100.0 32 ............................ CGGCATTGCTGAATGCCATAGCGGATCTGCTC 1566 28 100.0 32 ............................ GGCATCCCCGAGCGCAAGCTTCCATCCCCGCC 1626 28 100.0 32 ............................ AGCGGCCTGGACCTGGTTCGGCCCGTCCAGGC 1686 28 100.0 32 ............................ CAGAAGCGCCGGCCGTTGGCGAAGAACCAGTA 1746 28 100.0 32 ............................ AAGCAGGTGGGCATGTTCACCGCGCCGCAGCC 1806 28 100.0 32 ............................ GATACCTGACGGCCTGGTGCTGGATCACCTGT 1866 28 100.0 32 ............................ TGTCCTTTCAACTCGGTCTGCTCGTAGAGGTT 1926 28 100.0 32 ............................ TTGAGAAGCCGCGGGTGTCTAAGAAACTGGTA 1986 28 100.0 32 ............................ AAGACGTGGCAGGCGGCCTACAACCACGACGA 2046 28 100.0 32 ............................ TGACTGCGGGGCTGCACGACATAGTCGTCGAC 2106 28 100.0 32 ............................ GTATGAAGTGTGTTACCGCGTGGGCGATTCCT 2166 28 100.0 32 ............................ TCGTAGTGGCCCCACGTCGGCGGTAGCTCGCC 2226 28 96.4 0 ...........A................ | ========== ====== ====== ====== ============================ ================================ ================== 19 28 99.8 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCACTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTTCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAGGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCACCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGTCGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 12432-10778 **** Predicted by CRISPRDetect 2.4 *** >NZ_RXDD01000023.1 Pseudomonas aeruginosa strain Jp100 IPC750_23.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 12431 28 100.0 32 ............................ ATCGACCGCAATCGAGGATCACTAAGTCTTCG 12371 28 100.0 32 ............................ ACCGAGGCGGTCTGGCGGACGTTGCGAATCCT 12311 28 100.0 32 ............................ TGGGCAAGGCTGACGCGTGGCGATCGCGTGAT 12251 28 100.0 32 ............................ AAACACATCACCAGTATCTGCCGGAATGTCCA 12191 28 100.0 32 ............................ ATCCGCTGAGCTTCGTCCCAAGCTTGCGAAGC 12131 28 100.0 32 ............................ ACAACGAGGCATGCGCATATGCAGAGCACTTG 12071 28 96.4 32 ..............G............. AACACCATCGGCGACGTGGAGACGTGGAACCC 12011 28 100.0 32 ............................ TTGCTGCGTGTTGCAGCGACACCCGTTCAACA 11951 28 100.0 32 ............................ ACTGGAGATACGTGCACAGATCGGACGACACG 11891 28 100.0 32 ............................ GGTCGGTGACGGCACCATTGGCGGCCAGGTCA 11831 28 100.0 32 ............................ TCACGAATCACGAGAACGGTCCGATTCCGGGG 11771 28 100.0 32 ............................ GCTGAACAAATTGCCGAGTTCGAAGCAACTCG 11711 28 100.0 32 ............................ TGTTCCGAAGGCGTCAACGAAGGCTAATGACC 11651 28 100.0 32 ............................ TGATAAAACGAGTCAGGAAGGCCCCTGCGGGA 11591 28 100.0 32 ............................ ATATCAGTTTGCATGGTTTGCTCCTACCAAGC 11531 28 100.0 32 ............................ TTGCATCGCACCCTCCTGCTCACCGACCAGGC 11471 28 100.0 32 ............................ GAGCAGTTCTGGCCGTTGCTCTTAAGCGTGTA 11411 28 100.0 32 ............................ ATGAGTCGCTTGATCCCGTCGCGCATGAATGT 11351 28 100.0 32 ............................ ATGTAGTTGCCCTGCATGTTGATTTGCGTGGC 11291 28 100.0 32 ............................ TATGACCCGTCGTACGACTACGCCTCGAACAC 11231 28 100.0 32 ............................ AGGCAGACGAGTACGCGCGGTCTCGCGAAGTG 11171 28 100.0 32 ............................ AGAACATGGCCCGGCTCCCGACGTTGCTGCGG 11111 28 100.0 32 ............................ ATGACGCAAGACGAGCTTGTCCGCCTTCTGGC 11051 28 100.0 32 ............................ GTATGCCCGCGAAAGCGGCGCCTGGGCGGAGC 10991 28 100.0 32 ............................ GTTTGCAGGAAGCGGCGCTATCGCACCGAACT 10931 28 100.0 32 ............................ ATAGCTACGCCGAGCCAGTTGTAAGCTGACGC 10871 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA ACGGAT [10847] 10805 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 28 28 98.9 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAACACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGGTCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGGGCTTGGAAGGTTGATGGGGTTTTGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCACCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 156798-158623 **** Predicted by CRISPRDetect 2.4 *** >NZ_RXDD01000013.1 Pseudomonas aeruginosa strain Jp100 IPC750_13.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 156798 30 100.0 37 .............................. AGGTTGTTAAAGAGCGGTCGGCTCGGAGGCCTGGGGT 156865 30 100.0 36 .............................. ACCAGCACTCAAGCGCCGCCACCAGTCAGGGCAGGT 156931 30 100.0 36 .............................. AATTCACGGAACGCCAGAGCAGGTAACCAAGGACGT 156997 30 100.0 36 .............................. ATCCGCACCCACCGGAAAGCCCTGGTTCGCCGGTGT 157063 30 100.0 37 .............................. CGTGTCGGCAGTGTCGCCGCCCCGGCGCCCTAATAGT 157130 30 100.0 36 .............................. CTCTCCGCTCAGTCCTGTAGAAATTTTGACCAAGGT 157196 30 100.0 36 .............................. CTCTGCTACATCGCGAAGGAGCGAGGCTATACCGGT 157262 30 100.0 36 .............................. CTCACCCAGCAAGCAATCGCCGCCCATCCCCGCCGT 157328 30 100.0 38 .............................. CGCTACCAGGCCTTTGCTGATCGCTGGAAGGCGCAAGT 157396 30 100.0 36 .............................. ACCGCGATCTGGGATGACCTCACCGTGCCGACCAGT 157462 30 100.0 38 .............................. CTCCAAGGAGAATCGCAATGAGCGACTTCGAAAAACGT 157530 30 100.0 37 .............................. TCCTACGACAGTTTCGGCGGTTACATCTGGGACGCGT 157597 30 100.0 38 .............................. CACTACTGCGGCCGCGACCAGGTGGCAAAGACCAACGT 157665 30 100.0 38 .............................. TCGGTTGATAGTTGCCGGGGATGCGCCGGCATCCAAGT 157733 30 100.0 36 .............................. GCAAAGCAGGCCGAGCAGGCCGAGGCGGAGCGGCGT 157799 30 100.0 37 .............................. TACGACGCCATTCCACTTTCCGGATGCTGCTGTATGT 157866 30 100.0 35 .............................. TCCGTCGAGTCGTTCAGCACGACGAAGAAGCCTGT 157931 30 100.0 37 .............................. GCAGATCATGGAAGGTTATCGCCAGCGCCCACTCGGT 157998 30 100.0 36 .............................. GCTTGCTTATCGGGCAGGAGAGCCGTGGTGATCCGT 158064 30 100.0 36 .............................. TTCGGTACGCAACTGATCCAACCGGTTGCACGACGT 158130 30 100.0 36 .............................. GGGCGCACGTCGAGGACGCCTTCGCGAAGGTCAAGT 158196 30 100.0 35 .............................. AGTGTCATCATCGTGCGAAAAGCACTTAAGTAAGT 158261 30 100.0 37 .............................. TCGATCAGCGTTGCTTCGAATGCGCGGAACCAGATGT 158328 30 96.7 35 ..................C........... GGGTGGCCGTGATGGCTATCGAGATCAACCGCCGT 158393 30 100.0 37 .............................. GCGGCGTGAGCGTAACGGGTAGTGGTGGCCACCGCGT 158460 30 100.0 38 .............................. CGATGGTACGTATCGGCAAGCTTCAGCAGTTCCAGCGT 158528 30 100.0 36 .............................. TTCGGTCGGCAGATCAACTTCGAAACGCCGTACAGT 158594 30 93.3 0 .......................G.....G | ========== ====== ====== ====== ============================== ====================================== ================== 28 30 99.6 37 CGCGCCCCGCACGGGCGCGTGGATTGAAAC # Left flank : CATTTCTGTGGAAGTGAGGTGGCGACATGATGGTTCTGGTCAGCTATGACGTGAGCACTCAAGATGCTGCAGGTGGCAAGCGCTTGCGCCGCCTGGCCAAGGCCTGCCGCGATTATGGGCAGCGAGTGCAATACTCGGTGTTCGAGATCGAGGTGGATAGCGCGCAGTGGACATTCCTTAAGCATCGTCTGTGCAACCTAATCAATCCGGAACAAGACAGTCTACGTTTCTACTACTTGGGTACGAACTGGCAGCATCGTGTGGAGCATGTTGGGGCCAAGGTTGTACTCGACCTTAATGGCCCGCTGATTCTTTAGCGCCGGCGCGAACCTAAAGCGACCGACCAAACCCTGGGGGGTTCGCAACTCTCTAGCTGATTGATTTATATACTCTTTCTTTGAAGTTAGGAGTTTGAAGGCGCGCGCCTTGCTTAAAGAAGGCATGTTTCGCTGAAGTAAAAGGTTTTTTTCATGCTGATCAATAAGTTATAAGAGGGCGGT # Right flank : GATAGATTTTTGGGAGTTTGTCCTGAAAAATTTTGTCTCGCCACTCTCTTCCCGGCCCAGAGTCTGGCCAGGAACTCTTGTGTCACGGTGTCGCGGCCCCAGGCCGAAAGAAAGACCAGGTTGCGCTGCTCGTCGCACACGTGGGCGTCGACGTACAGGTCTGGGCACTCTTCGATCTGGTAGAGCGGGGTGGGGCTGGGCATAGGAACCTCCTGGAAGGAGGAGCCACGCCGCCCTCAAGGGGCGGTGAAGCCCCTCGGGGTGTAGTCCAACTGGTGCAGGGGAGCGTGGTGGCTACCGAACGCTCTTGGTGTGAGGGTCGAAGCTGAGCCCATCGGCTTGGTGCAGCGGCCCTTGGCCGATCAGGAAGACCTGGCAGAGGTACTGATCGCGTAGCGCGACAGCCGCTTCGGCCTGCTCCAAGGTCAGCGACAGCTCCTCGATGAACAGGTCGATGAGCTCGTCGTCGCCGGCGACGTCGTTGTTGGACAGTTGGTCCT # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGCGCCCCGCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CGCGCCCCGCACGGGGCGCGTGGATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.80,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //