Array 1 188969-191377 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIRCF010000003.1 Salmonella enterica subsp. enterica serovar Mississippi strain FSL R8-2779 scaffold3.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 188969 29 100.0 32 ............................. CTACAGGATCTAATTTTGATGGATCGGCATAC 189030 29 100.0 32 ............................. ATAGAGGATATAGACTATAATTTAGTTGTTAA 189091 29 100.0 32 ............................. CAGGTGCTTGGGATGGATGAAGTTGACGGGAT 189152 29 100.0 32 ............................. CGATCGGGGAAGCGCTCCGGGTCAGCAAATCA 189213 29 100.0 32 ............................. GCCGGGACCGCCGAGTCAGCGATCACGGTGAC 189274 29 100.0 32 ............................. TTCATTGCGAGATTCAACAAATCGCTCCGGGT 189335 29 100.0 32 ............................. CCTGCCGGAAACGTTTTTGACGCAACAACGGT 189396 29 100.0 32 ............................. TAACGGTGTGTGGGTCGGAGATGCCTCTGATG 189457 29 100.0 32 ............................. TTTATTATTTACGGCAGGGGCTAAGAGTACCA 189518 29 96.6 32 ............................C ATAATTTCATTATATACAGTATCTCCCGATAC 189579 29 100.0 32 ............................. ATAATAAAACTTTCATGATACCACCTAATCAT 189640 29 100.0 32 ............................. GTGGTACAATCGGAGGTGAAGGGGGTGTAAAA 189701 29 100.0 32 ............................. GATTAATATATGGCAGATACAATCGTTATTCC 189762 29 100.0 32 ............................. TAATATGAGTGAAAATAACAATTCATATTTGA 189823 29 100.0 33 ............................. GTAAATCAACTACTAATAGATTTTTATTAGTAC 189885 29 100.0 33 ............................. GTAAATCAACTACTAATAGATTTTTATTAGTAC 189947 29 100.0 32 ............................. GTAAATCAACTACTAATAGATTTTTATTAGTA 190008 29 100.0 32 ............................. CGACCAGGAGCTGCTCACGGAGAGCTCGCTGG 190069 29 100.0 32 ............................. CTATCATTAATAGATAATGTAATAGAGGCTAA 190130 29 100.0 32 ............................. TGATTGAGCTACATTATAAACGAATGATGAAT 190191 29 100.0 32 ............................. AACTGCAATTATTTATAGTAAATTATCCAGAA 190252 29 100.0 32 ............................. AATTTGCTCTCACGCCTGGCGACCCGTCTCGA 190313 29 100.0 32 ............................. TAATAGAGGCTAATATGTTTAAACATAAATTA 190374 29 100.0 32 ............................. CCAGTACCAATTGTCAAATAACCGCATTTAGC 190435 29 100.0 32 ............................. ACGGGGGCGTCATCCTCAACAGTGCAGGCGAT 190496 29 100.0 32 ............................. CCGGGGCCGCTTACGTGCTGATCCTGACGCTC 190557 29 100.0 32 ............................. ATGGACGAGAGAGAGCGGAAACATCATGTTGA 190618 29 100.0 32 ............................. TGTGATCTGATCGCCTCTGGCGTCACTGTACG 190679 29 100.0 32 ............................. GAGTATAGTTCTATGGGCCTGGAAAAACAGAA 190740 29 100.0 32 ............................. GAGTATAGTTCTATGGGCCTGGAAAAACAGAA 190801 29 100.0 32 ............................. GCAACCAAAAAGGCCGCGAAATCGCAGCGCCG 190862 29 100.0 32 ............................. GGTGTAATAATAATTGGGATAAATTCGTAAGT 190923 29 100.0 32 ............................. TGAATAATATTACTCCCTTTTAAGGGAGTTGG 190984 29 100.0 32 ............................. TGCTTCTTCTGGATTTTCTTTAGGTTTCTCAT 191045 29 100.0 32 ............................. TGACTGTATCAGCCGCAGCAAACGCACACTCC 191106 29 100.0 32 ............................. TTGCCAACCCACAGCAGTCCGTCAGTAAAATC 191167 29 100.0 32 ............................. GTTATTCTCAAAACACCGCTACGCCGGGGTGA 191228 29 100.0 32 ............................. ACCATTTATTGCAGAGATCGTAACATCTAACC 191289 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 191350 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 40 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGTTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCTGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 207936-211138 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIRCF010000003.1 Salmonella enterica subsp. enterica serovar Mississippi strain FSL R8-2779 scaffold3.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 207936 29 100.0 32 ............................. CATTTTTAGTTAAACTAGCTAATAATATAATA 207997 29 100.0 32 ............................. TGTGGCTTATATGAAATTTCCTATTAACATGT 208058 29 100.0 32 ............................. GTTGGGTAACTGAATATGTTTCTAATAATAAT 208119 29 100.0 32 ............................. AGAAGCGGGTGCGTATGCCGGCAGCAAAAATC 208180 29 100.0 32 ............................. ATGTCCGTAATCATTTTGGTCAGCCAGTATCA 208241 29 100.0 32 ............................. TTTCAGGCAATTTTTTCCGGCAACGGAACGAA 208302 29 100.0 32 ............................. CCACATTGAAATGCTCGAGGACGCCGCAGACC 208363 29 100.0 32 ............................. GCCGAATGCAAAACCCCCGCAAACAGCAGCAA 208424 29 100.0 32 ............................. TTTTATGTATGTATCTTTCAATATCAAAATAT 208485 29 100.0 32 ............................. AATTCCCGACCCCATCAGCAACATTAACTCCG 208546 29 100.0 32 ............................. ATTAACCCTCAAATGTGGTTATTTGCGCAGGC 208607 29 100.0 32 ............................. ATAGATTCTCTTAAATCATTCATTAATTTAAA 208668 29 100.0 32 ............................. CTGAATTGCTGCATCCAGGCGATCCGACCATG 208729 29 100.0 32 ............................. GATTAGTTTTACTGTAAGCCTTGTATGAATCT 208790 29 100.0 32 ............................. CCCCATATGGTATGGGGCCAGAGTAATCAGGT 208851 29 100.0 32 ............................. ATGCTGGATCAGCCACCACAACCATTTACCGG 208912 29 100.0 32 ............................. AAATTTATGAGGAAAATTATGTCAGACAGTAA 208973 29 100.0 32 ............................. GCCGCTTTTGTGGCTGTTTCCGCGAACTTAGC 209034 29 100.0 32 ............................. GGGATAAAGGGGACAAAGGCGATCAGGGTGTA 209095 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 209156 29 100.0 32 ............................. GGGTACCGGACAGGCCGATCACCTTTGTCTGC 209217 29 100.0 32 ............................. GTGAACATGATGCCTGGAGCACTATTTACAGT 209278 29 100.0 32 ............................. TCCCATTTATCAGGTGGCAGCGGCATTGATTT 209339 29 100.0 32 ............................. CCAGTGATAAAACCGCTGAAAAACGCCTTAAT 209400 29 100.0 32 ............................. GGATCAAACGGGTTACAATGCCGTCACTGAGT 209461 29 100.0 32 ............................. CGGTACCGAAAAAGAGTCCGTATTAAACGCAA 209522 29 100.0 32 ............................. AATGCAGTTTCACGCACACCTCGCCGGCAACG 209583 29 100.0 32 ............................. AACTCGCCAAATGGGAAGCGCGCGTTGAGAGC 209644 29 100.0 32 ............................. CCAATGGAGAGGACGCGCAAAAAACTTCTCGT 209705 29 100.0 32 ............................. TTCCGTCCGGGCTGTCTGCGCCAATCGTAATC 209766 29 100.0 32 ............................. TTCGATTACAGTAAAATTTATGTTTATTCAAT 209827 29 100.0 32 ............................. AGAAGATATTAAACCCCATATAAACCCCACTC 209888 29 100.0 32 ............................. TGTGCCCGCTGACAATACCGTGGGTGTAGGCC 209949 29 100.0 32 ............................. GGCCGTATGGCTGCGCTACTGGATGAATTGAT 210010 29 100.0 32 ............................. ATCGCCTTAACTAAGTGCTCCGCTTCTGGTAG 210071 29 100.0 32 ............................. ATCCGATCCACATCAGCAGCCAGCTCTTTAAA 210132 29 100.0 32 ............................. GCGATGTCGTGTCTGCTACTCCCCATAATGGC 210193 29 100.0 32 ............................. CCCCGGTCATTTCCTCTGATATCAACGAGTTT 210254 29 100.0 32 ............................. GGATCTTCATCGGATTAGACAAAGAGAAAACC 210315 29 96.6 32 ............T................ GTCAACGAGGGATTGAATTGGTGGTGTATTGG 210376 29 100.0 32 ............................. ATACATTCCTTACTCCTCGCACATTCACGAAT 210437 29 100.0 32 ............................. GAGCTGTATACAAACGGGAATATTCCGCTATT 210498 29 100.0 32 ............................. GTAATTACCGCACAGCGCATGATTTTAGTACG 210559 29 100.0 32 ............................. CCACAGCGCGAAAGAGGTCTATTCCTGGCTGT 210620 29 100.0 33 ............................. CTACAATGTCAAAATGATGCCAGTTATCCTGGT 210682 29 100.0 32 ............................. AAAGAAGAAAATACAATGCTTGTAATGATGAA 210743 29 100.0 32 ............................. GTTTTTTCTCAGCGGCTGGCAGACCTGATCGC 210804 29 100.0 32 ............................. CGAGAAATGAGTGCCATTTAAACCCCGCCCGT 210865 29 100.0 32 ............................. TGCCGACGATACCCTGCAAAATCTGCGGCGGT 210926 29 100.0 32 ............................. TTCGCCGTCGTGAAAGCGGGTGAGCATTCCAG 210987 29 100.0 32 ............................. GCTGATAGCCAACCTGTAAGTGATCGTGATGA 211048 29 100.0 32 ............................. CTTTCTTCAGACATTTCTCCAACCCGGCAACC 211109 29 100.0 0 ............................. | A [211136] ========== ====== ====== ====== ============================= ================================= ================== 53 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGTACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //