Array 1 43211-44176 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JACEXB010000004.1 Staphylococcus chromogenes strain SC22 NODE_4_length_202553_cov_165.108, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence                	Insertion/Deletion
==========	======	======	======	====================================	===============================	==================
     43211	    36	 100.0	    30	....................................	TAAAACTAAGCAAATATAAACCAACCATAG 	
     43277	    36	 100.0	    30	....................................	TTCATCAAGACTTATCCATGTAGCATTAAG 	
     43343	    36	 100.0	    30	....................................	AATAATACAAGTATTAATAGAGACAGAGAC 	
     43409	    36	 100.0	    30	....................................	AATTAAGAGAAAAATACGCCATCGAAATCG 	
     43475	    36	 100.0	    30	....................................	GTATTGTCAGACGGGAATACGTACCCGTTT 	
     43541	    36	 100.0	    30	....................................	AAAGTAGATAACGATGTGTTAGCGGCACTT 	
     43607	    36	 100.0	    30	....................................	ATTAGATCAGTGGTAAATTCCACTTTCTCT 	
     43673	    36	 100.0	    30	....................................	TGGACGTTTATCTTGCCTAGACTCAACCCC 	
     43739	    36	 100.0	    30	....................................	TCAGTTATGTTTAAATGCGCCATACAACTT 	
     43805	    36	 100.0	    29	....................................	GAACAATCGTAACAGTTTAGGTCAACCAT  	
     43870	    36	 100.0	    30	....................................	CAACAGCGGTTGTTGAGGGTGTAGAGCTTA 	
     43936	    36	 100.0	    30	....................................	TAGTACAGGGGCTAAAGTTAGCATAGCCTT 	
     44002	    36	 100.0	    30	....................................	ATTCAGAGCTTGTTAAGTTCAAACATCATT 	
     44068	    36	 100.0	    31	....................................	CTTCATTTGGCTTGAATGATTGGATAACTAC	
     44135	    36	  94.4	     0	...........................T.......A	|                              	TTT,CA,C [44161,44168,44172]
==========	======	======	======	====================================	===============================	==================
        15	    36	  99.6	    30	GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC	                               	       

# Left flank :   GATGACACCTTCATCATTTTCCTCTTTATTATCTTCACTATGACTAGCCGCAATCGTTAAAATATTGTTGTTAAAATCAACACTAATATCAGATTTGTCCATACCTGGTAATTCAGCAGACACGATATAAGCATCGTCACGTTCAGTAATATCTGTTTTAAAGTCGTTTGTATTTAATAAACCTTGTCCAAAGTCTCTAAATAAGTCACTTGGATTCATGTCAAAAATTGAATTGTTAAATGGTTTCATTTGGAATGCCATAAAGCATCGCTCCTTCATATTATCATTATTTCGTCAATATCAAGAAACTGGTTGTGATGAAGGGAGGTAACTGATGTTCTATCCCTTACAAGTCTTATTATAAGACAAAGGTCAAAATTAGTCAAGGTCAAAGTTTGATGTTCATTTTGATCTTAATCAGGATATGTAAATTTTTAGAGAAACCTTTACATATCAAGGGGTTATGCAATTGAGAGAGTTATAGTATACTGTAGCTAGAG
# Right flank :  ATGTACTATAAAATAGAATTGAAAATTATCTTGACTTTATATTCTTACATGTTAGAATATTCTTACAAGTACTTATTGTGCTTATACCTAAAATTACAGAATCTACTGAAACAAGACAATATGTCGTGTTTATCCCACTAATTTATTAGTGGGAATTTTTTTATGCTTAATTTATAATTGTAACTAAAAAGGGGGATACATAACATGACGAATTATATACTTGGACTCGATATAGGTATTACTTCTGTTGGATACGGGATTGTTAACAGTGAGACGAGAGAGATTATAGATGCAGGGGTACGACTTTTTCCAGAAGCAGATGTAAATAACAATGAAGGTCGACGTAGTAAAAGAGGAGCACGCCGTCTTAAAAGAAGACGTATACATCGTTTAGAGAGAGTCAAACAGCTTTTAGCCGAATACGAATTGTTAAATTCTTCATCTATTCCACAAAGCACCAATCCTTACGAAATACGTGTAAGAGGATTAAGAAATGAACT

# Questionable array : NO	 Score: 6.26
# 	Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:72.22%AT]
# 	Reference repeat match prediction:         F [matched GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-3.60,0.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: NA [65.0-70.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.87,0   Confidence: HIGH] 

# Array family : II-C [Matched known repeat from this family],   
//