Array 1 11721-11473 **** Predicted by CRISPRDetect 2.4 *** >NZ_PZWW01000031.1 Staphylococcus aureus strain CM57 PROKKA_contig000031, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================== ================== 11720 36 100.0 35 .................................... TCTTCTAAGACGCGATATGATTCTAATTGGTCTTC 11649 36 100.0 33 .................................... TCATATTCGATCGTGTATATCAAAACTTTATGC C [11637] 11579 36 94.4 35 .................................G.T CTCATCTTGATGATCCCAATTGGCTTGGTTAAAAA 11508 36 47.2 0 GAAATCG.TAAT..T.......T..A.A.AA..T.T | ========== ====== ====== ====== ==================================== =================================== ================== 4 36 85.4 35 ATTCGATAACTACCCCGTAGAAGAGGGGACGAGAAC # Left flank : AGAATTAATATACAGACACCTATGTCTTTTAAATATCAGAGTAATTACATGATTTTTCCTGAGGTTAAACGTTTCTTTAGAAGTATTATGATACAATTTGATGCTTTTTTCGAAGAATATAAAATGTACGATAAAGAAACATTAGATTTTTTAGAAAAAAATATTAATATTGTTGACTATAAATTGAAAAGTACACGATTTAACTTAGAAAAAGTTAAAATCCCTTCATTTACGGGAGAAATAGTGTTTAAAATTAAAGGACCCTTACCTTTTCTACAACTAACTCATTTTTTATTGAAGTTTGGCGAATTTTCTGGATAAGGTATGAAAACAAGCTTAGGCATGGGGAAATATAGTATAATATAACTAGAGTATAGCTGAAATTTAGTTGTCAAAAAATGTGACATTCTGCACTTATAGTACAAGTGATTTGTCACTATTTTTGACAGTAAATTTTGCCTTTGAACTATTGATTTGATAGGCTTTAAAGAGCTATCTAA # Right flank : TAAAAATATATTTGATTTGATAAAATATTCTGCAAAAAAGAGGAACAAAAAATCAAGATTTAAACTGTAATTCATTATTATTGAAATTAATCGACATTCAATTTCTAAATAAACAGAAACAAAAATAACTTTCATATAAATAATTTCTTTGCGATTAAGTTGGAATTAGAAATACTAAATACAAATAACAGCGAATGAAATGCATATTATTGAGGAATTGGATGTGTAGTGCAATTTCGAGAGTTACTACTTAAGAAAATAAAAAGAAGAAAACAAACAATAAGAATTAAATCTGAAGCAAGATATAAAAGCAAATATTTTTGATACAACCACATTAGTAAATACTTTATTAATTAGTATACGACTGAAAGCGAAGTAACAGCTAACAATGCTCCAGATATAGACATTAGTGTTACGAAAGAATAATATTACCATCTAGAAAATGTAATTTTTTAAAAATCTGAAGATAAAGTAGATTACTTTGTGAGTTTTCATGTTAA # Questionable array : NO Score: 5.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.27, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGATAACTACCCCGTAGAAGAGGGGACGAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GATCGATACCCACCCCGAAGAAAAGGGGACGAGAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : III-A [Matched known repeat from this family], // Array 2 21263-20444 **** Predicted by CRISPRDetect 2.4 *** >NZ_PZWW01000031.1 Staphylococcus aureus strain CM57 PROKKA_contig000031, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 21262 36 100.0 34 .................................... TTTTTTCCACCCTTTCAGATCATCTATGATCTTG 21192 36 100.0 34 .................................... TAGAATGTTATTATCTAAGTGGTCGATGTATTCC 21122 36 100.0 37 .................................... TCATACTAGCACCCCACTCTCTACTGAACAAGTATCA 21049 36 100.0 35 .................................... CTTAAAATCTAATTGCATTGTTATCAATTCCTTTA 20978 36 100.0 38 .................................... TCTGTAATGTATTCATTTAATGTAATCATAATTTTTTC 20904 36 100.0 35 .................................... ATAAACCCGTTCAATTCGTTATCTTTAAATTCTTG 20833 36 100.0 36 .................................... ACAACTTCGTCATCTTTCATCATTTCTCTTACATCA 20761 36 100.0 36 .................................... ATATTTCTTCCATGAATAACACCCTCCTTTTTTCTA 20689 36 100.0 35 .................................... AAGTTAACGGCATTACCTAATAAAAATATTTTAGG 20618 36 97.2 33 ...................................C TCATCTTTCATGTCACTGATTAATTCATTTGTA 20549 36 97.2 35 ...................................C GGTAATAGTTGCTCAATAGGTAATAAAACGTCGGT 20478 35 91.7 0 ............T.................-...G. | ========== ====== ====== ====== ==================================== ====================================== ================== 12 36 98.8 35 GATCGATAACTACCCCGAATAACAGGGGACGAGAAT # Left flank : TCCCTTGAGTAATCGATTTAATAATTCTACCGCCACATTTTTCTGTTTCAATCCTTCTACATCTTTTAAAAAGTCATCAGATAGGATTGATAAATCGGGTTGTTCAAGACCTAAAGTTTAATAAATGTCAAGTCAATGAAATCTTCAGTTAATAGTGTATATTTGATTATTATTAGTTTAAATATATTAAAATTAAATACTTATTATATATGGTTCTTTACTATTTTAGAAGTATATTTTTTATTTTCCTGAACAGTAGTTATTAAATTTATCTCTTATTTTAAATTAGAAAGGAAGAAAAAGTTAAATTTATATTAAGTTTTATATATGATTAATTATTAACGTATTAAATGTAGTATACTCTTAATATATAGAAAATTATCATAATATTTGTCAAAAAAAGTGACATTTCATATAGTAGCATGGTGTTAGTTGTCACAGTTTTTGACAGCCAAAATAACACTTGAACCTTTGTGGTTATGCTATTTATTAAAGTATCT # Right flank : GTAAATTTAATTACACTCTAAAATTTGTAAATTTTTAATGGAATACGCATTGATTAATTTTTAGGGGATGAAAAATGAAAGATGTTATTTATGTAGAAAATCATTACTTTGTTACCGTGAAAGAAAATAGTATTAAATTTAGAAATGTAATAGATAAAAGTGAGAAATTTTATTTGTTTGAAGAAATAGAAGCGATTATTTTTGATCATTATAAAAGCTATTTTTCTCATAAATTAGTAATTAAATGTATAGAAAATGATATCGCTATTATTTTTTGTGATAAAAAGCACTCTCCATTAACGCAACTTATTTCTTCTTATGGTATGACTCATCGTCTTCAAAGGATTCAAAGTCAGTTTCAATTATCTGGGAGAACTAGAGATAGAATTTGGAAAAAGATTGTTGTAAATAAAATTATTAATCAATCAAAATGTTTAGAAAACAATTTACATAATGAGAATGTGAAGTTATTAGTAAACTTAGCAAAAGATGTTAGTTCT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATCGATAACTACCCCGAATAACAGGGGACGAGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.00,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA //