Array 1 26966-26570 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009622.1 Corynebacterium ulcerans FRC11 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 26965 29 100.0 32 ............................. AGCCGATGGGAGAGTCCTTCGGCTGTCCAACC 26904 29 100.0 32 ............................. TTTTAGCCCTGCCATTAATCTATACCTCCGCG 26843 29 100.0 32 ............................. GCGCGTTAAGGGGGTATCCCCACCGACCCACG 26782 29 100.0 32 ............................. CCTCAGCCACTTACTTCCCACCAACTAACCAC 26721 29 100.0 32 ............................. GAGTATGGCGCGGTCCCGGGTGCCGATTTTGA 26660 29 100.0 33 ............................. CGACTACATCGCCAAATTCGGTTTCAGCTTCCC 26598 29 93.1 0 T.........................C.. | ========== ====== ====== ====== ============================= ================================= ================== 7 29 99.0 32 CTTTTCTCCGCGTATGCGGAGGTAGTTCC # Left flank : ACATTATGATGGAGATCCTCACTCCGCATCTCCCCGAGCGTACCGACGACCGCCTCATCGGCGGAAGAAACCACGAAGTCCCAGGGCACACACAATATGGTGGTAAATAAATGTTTGCGGTCATCCAAGGACATAACCTTCCGAACCACCTCAACGGCTACCTCAGTCGCTTCTTTTCAGAAGTAGACGCAGGTCTTTATGTAGGAGTTCTATCCAGAGCCGTTATGGAAAACCTTTGGGAAAAATGCCAATCCATAGACCTAGCAGGATCCCTTACTCTGATTCACCCGCAATATGATGCTGAGCAAGGGTTCAGAATCCGCACAACAGGAAAACAACGGCGCCCCGTCGTTGATATTGATGGCCTTTTCCTCTCTGCTCGTGGTCTAATAGAAGACGTGCGTTTTGCTGACCCCCTGGATGAAGCCGATGCAATTATTCCAGACGAAGTTTTGGAGGATTTTTGCCCGGAGAGTGAGTAAACGCGCAGGTTATTTAGT # Right flank : CTATATGTAAACGGGAAGGGGACGCACGTTAATTCCATCGCTATGGCTTATAATGTGGGAGGGCAGTTGACGAATGCCTGTGTCGATAAATTTGAGGTCACATATCGGGAGAATGGCCAAAGCAAGGCCATGACCTCGGGACATAATTGCGCGCTGTACCGTACCACCCATACTTTTCAGGTAAATAGGAATTTTGACCCTAATTCACGGGTCTGTGGACGAGCGCACGTGCAAGGTGCGGGTCCAGGAAACTGGGCTTGCATTACGATTAAGCCTAGGAGGGTAGATGGTAGAATTTCTGACTATAATTGGCAGCTTTAGTATCGCTTTTCTGATCCCTACCTTACTTGTGATCATAATCGTGCTTTTTGTTCTGTCACTCAAGAAAAAGAAGTAAACCTTCTCCGTTTTGAATGTTGGTCAGCGCTATTTCGGTAGATGCCATCCAACATTCTTTTAGTTTTGAGCGTTTATCGACTGCTTGTTTCCCAGCCTATGCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCTCCGCGTATGCGGAGGTAGTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.20,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 103250-102708 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009622.1 Corynebacterium ulcerans FRC11 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 103249 36 100.0 36 .................................... TTGCGAGGCGAACATCAATCGCCCGATCCGCGTTGT 103177 36 100.0 37 .................................... CATGCGAGAACCACATCCTCACCCAGTAGGCGGGGGT 103104 36 100.0 37 .................................... GGCGACTTCGACCGCAATTTCTTCCGCACCGAGGCAG 103031 36 100.0 36 .................................... TGCGTCTTTTTGCTCTCGCCACTTTCTTATGGCTTC 102959 36 100.0 36 .................................... GCATTCGACTTCAACGCCTTCAACCGCGCCATGGGA 102887 36 100.0 36 .................................... CCACATGCGCGCCTTATCGCCCTTCTTACGGGGCAC 102815 36 100.0 36 .................................... CCGTGACCATGGCCCTACATGGTGGTCAAATCCCCA 102743 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ===================================== ================== 8 36 100.0 36 GTCGCTGCGGCTTCGGTCGCAGCCTTTCATTGAGGT # Left flank : AGATACGATGAGGCGGGATGATGTTCGTCGTACGATTATCGCCTACGATATTGCCCACGATAGACGTCGAAATAAGCTAGCGAAGACCTTGCAAAAATATGGCGACAGGATCCAATACAGCGTTTTTGTTGTCGATTGCAGCCCTGCAAAGCTGCTTCGGCTAAAGGATGAAATAAAACTCATTATTAACGCTGAGGAAGATTCCGTTTTATATTGCGACCTTGGACTGCTGTCGAAGGTAGACACCACGTTTACTTACGAAGGCAGAAAACAAGAGATCACTGACAATGAATTTCTGATTATCTAGCAGCAAGAAACTACCGCGAAGACCCTGCGGACTTTAAAAATCCCGGGAGGTCTTCGCGGTCACGTTTTCCCTTGTCATTATGGTTTTCATAGAGCAACAACAATCACCCCTTTGGAAAATAACTTCATAAAAGTCGAGAACTTCGCCATAAAAGGGCAAATACCGAGGTTAAGTCAGTTAAAATGAGGGGGCT # Right flank : GACGCTGTAGGGCTGCGCGGTCCTCATCGGACGCGCTGGTGCTCGAGATCTGCGCAATGGCACGGGCTCATAGCCGTGCTTTCTCCCCAGCTGGTACTGGGTGATAAGCGAGCGTCAGGTAGTTGGAGCTGCCTGGCGCTCATTCATTTTTCAATGTCACCACACACCCCTACGGGGCATGTACGCACTTCGGATACACGACTCGCATTTGCATTGTTCAACGCCACAGAACGATCTATCCAGTCCATCGCCTAGGGCCAGCAGCTAGTACTGCTTTATTTCCGTAGACTGCCCAATATGAAAGAGAAAAAACTATCGTCCTTAGTATTCGGAAACGTTATCCTTGAATCTCAGATTTTGGGGACAACCATCCGAATATACGCTGATGACATGCGGTCTTATTCTTTTCGACCTAGCCCTTATGCCTCCCTCTCCGTCCCCTTAAACGAGTTAAAAGGGCAGCTTCAGCCTGACCACGCCGAAGCTCTCGCTAAAAAAGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTGCGGCTTCGGTCGCAGCCTTTCATTGAGGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.20,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [33.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA // Array 3 1909888-1911990 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009622.1 Corynebacterium ulcerans FRC11 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1909888 29 100.0 32 ............................. CCCGGTTGTGGAGGCGCAGTTCACGGGTAATG 1909949 29 100.0 32 ............................. AGCGGCGATAACACTCGAAGCTAAGGATACAA 1910010 29 100.0 32 ............................. ATCACGAGCCAAGATCACCGCCCTACCGAACC 1910071 29 100.0 32 ............................. AACGGGGGTAACCCCTAGGCCGTGGTATGTGC 1910132 29 100.0 32 ............................. TCGGCAGCGAGCTTCGACCGCTCCCCTTCGAG 1910193 29 100.0 32 ............................. CAAGTCATTCCGCGTTTTGATTTGCCTCGCCT 1910254 29 100.0 32 ............................. GACTTGCACGCTGACGCTTACCGGTTTGCGAT 1910315 29 100.0 32 ............................. TACCACATTCGAAAAGCCCACGAGCCAGGACG 1910376 29 100.0 32 ............................. CAGCGGTTTTGTAGCAATTTTTTAATAACGTT 1910437 29 100.0 32 ............................. AAAACTGCTGCTCAACCCCGCCGCCTCCGCAA 1910498 29 100.0 32 ............................. CGATCCCTAGCTATGAGCGGTTTTTTAACATC 1910559 29 100.0 32 ............................. AGCCCCCACATATCCATTGACGTAGGCTTCAT 1910620 29 100.0 32 ............................. CCCCAGCACCGCGTGGGTGTGGGGGTTGCAGA 1910681 29 100.0 32 ............................. CGGGGCACTGCCCTTGTATGCGACGCGGGGGA 1910742 29 100.0 32 ............................. CTAACCATGTGAAGGTGGTGATCGAATGAGTG 1910803 29 100.0 32 ............................. TTGTGGGGCCTGCAGGGATCCGTGAAACTCGA 1910864 29 100.0 32 ............................. CGTAGAAATGCCGGGACTATTCGGCAATGAAT 1910925 29 100.0 32 ............................. CACTTTGTCTAGCAATGTCAAGGCGTGGGTAG 1910986 29 100.0 32 ............................. GTCTGTGCACGTCGTGAAGTTCAAGGTGTACG 1911047 29 100.0 32 ............................. TACTTTGTCTAGCAATGTCAAGGCGTGGGTAG 1911108 29 100.0 32 ............................. GTCTGTGCACGTCGTGAAGTTCAAGGTGTACG 1911169 29 100.0 32 ............................. TACCGGACGCACCGCAGAAACCTCGCAACCGA 1911230 29 96.6 32 ............................A CCCCGTCAGCCTTTCGGGGGTGGCGGGGTTGG 1911291 29 100.0 32 ............................. ATCGGCAAAGGCGTAGGAAAGGGACGCAGCGG 1911352 29 100.0 32 ............................. GGGTAGGCATCATGCCCACCAGTCGGCTGCTT 1911413 29 100.0 32 ............................. GGATGTGGCCTCCTTCTCCGCGATAGCGGAGG 1911474 29 100.0 32 ............................. ACGTCAAGTCTTCCCATTACCTGAATTCGCTC 1911535 29 100.0 32 ............................. TGAGCATCCGCCGCAGCACTCGACGCCTCATT 1911596 29 100.0 32 ............................. ACCGCTGTGGTGCTTAAAGATGGGCGCCGTTG 1911657 29 100.0 32 ............................. ATATTTGCGGTATTGATCTTTTGCCGTGGCAG 1911718 29 100.0 32 ............................. ATGTCTTTATCCTTATGTAGTGGGTGGGTTTT 1911779 29 100.0 32 ............................. CGCTGCCAACAGCATCGAGCTGATATGGGTCG 1911840 29 100.0 32 ............................. CAAGTCATTCCGCGTTTTGATTTGCCTCGCCT 1911901 29 100.0 32 ............................. GACTTGCACGCTGACGCTTACCGGTTTGCGAT 1911962 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 35 29 99.8 32 CTTTTCTCCGCGTATGCGGAGGTAGTTCC # Left flank : GAACACCGCCAACCCCAGAAACCCTCGAAACTGCGACTGCTCAACATCAAGGATCTGCACACCGTTGGCAGCTAACACACGGAAAGCTGCTGCCGACACTCCCTGTCGATCCTGGCCTGAAATAGTAATAACAGCCGGGGTCAGCTCTGGGCGAAGGCTAACAGTTACTTGAGGCTGGTCCAGTTCAATCACCGATCTATTGTTGCACGACGCACCTCGATTCCTCCCAGTACTCCCCTATTTAGGAATGACGGGCTCCGCATCAACGGATGCGCACTTTATCCTCTTCCTACGGATCGAATCGCCTTATCTTTCGACCTTGTGGTTCTATGCCTTCCCTTGGATATTGCGGGGGTATGCAATAGTCTTTCCCACTTTTGTCATGGTCTAATAAGGGAGGCTAGTTTTCTCACCGATTGTATGGAGTTAATGTGCTGATTCCAGACGCAGTTTGGACTGTTTTTGACTTCTTTGGCGAGTAAACGCGCAGGTAAGTTAGT # Right flank : ATAGCTTGACACTTGCTAGATATATAGTTTGTGTCCACCACTACGGAGGTATAAATGTCTATCACGCCAGAACGGGTTATGCAGCTTTTAGGTGAAGGTATGACCCAATCCCAGATTGCTAGGGAATACGGGGTTACCCGTCAATACATCTTCACTCTTGCAAAAAGAGGAGGGCATGAAGCTAGGGAAATGGAATACATCAAAGATGACATACCTTGGCCAAAAGTTAAAGATAAGCACCGCGATAACACAATCTATAAAACGCTACGAATCCACGCCCGCTATATGGAACGGGGACAAGAGGGGGTACGTGGTTCAAGTTATGTTAAACTGCTCGGCATGTATCGAAAACTTGTTCGATTCAATCAAGTTATCGACTACGACGAGTCCTACCCACCTGTAAAAGGTTTGTCGAATACAGGCGGGTTTATGTACGTCCCGAGGTCTCCAGAAGACGGGAACCTCATTATCAAGATGAAGCCCGGTGTGCGAATCACGAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCTCCGCGTATGCGGAGGTAGTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.90,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA //