Array 1 409-1817 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQAD01000045.1 Clostridium botulinum strain P85 Cbot_74_contig_9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 409 30 100.0 36 .............................. GTAAAAAGTTTGGCTCTGCGTTCCATTCTTGATACA 475 30 100.0 35 .............................. AAAATAGCTATCCCACTCTCAAATAAATTTATAAA 540 30 100.0 36 .............................. TTGAAAGGCTTATTAAAGAGGACTATGTGGAACTTG 606 30 100.0 34 .............................. GTAATATCATTTAAATTATAGTATTTTTTATTTA 670 30 100.0 36 .............................. GTTCCTTTATTAGTAACTATAGTGTAAAATTGTCCC 736 30 100.0 39 .............................. CATACACTACAGATAGCATAAATCAATCTGTATCTAGTT 805 30 100.0 36 .............................. CATACTTATTTATGTTAGTTTTTGCTACCGTCAATT 871 30 100.0 35 .............................. CTTAAATCACTTGCAATTATAGGAACTGTAGAAAA 936 30 100.0 34 .............................. TTAGTTGGATAACCATAAGCTCCGAACCAATAAG 1000 30 100.0 36 .............................. AGTATAAACTTAAGATTTCAGTTATACGGAGTATTT 1066 30 100.0 36 .............................. AAGTAAATTTAAGGGGATGATGTAGTTGGAAGAATT 1132 30 100.0 36 .............................. ACGCTAGATTTTAAATCAGTCACCTGTTTGTTCAGC 1198 30 100.0 35 .............................. AGATCACCTAATTGACTTAATATATTTTCTCTTTC 1263 30 100.0 36 .............................. GCAGAATATGGGTAAAGTGATAAGATATTTAATAGT 1329 30 100.0 34 .............................. AACATACACCTAAACCATATTTATAATGTAATTC 1393 30 100.0 37 .............................. CCACTCTTTGTTGATTACTAATAATGTTTTCTTTATT 1460 30 100.0 36 .............................. TTTGGTCTTCTTGACATTTTGAATCACTCCTATTTA 1526 30 100.0 36 .............................. TGTTAATGTATACCTTAATCCAAAGGTACAGAATGA 1592 30 100.0 34 .............................. CCTTTTATAAAAGCATATTCGCCTTCTATTTTTT 1656 30 100.0 36 .............................. TATCTAAATATAAAGTTTTTCCGTAATAAATTTCAT 1722 30 100.0 36 .............................. CAAAAGAAAAAGCTATATTCTCTATCATACTTATCT 1788 30 96.7 0 ............................T. | ========== ====== ====== ====== ============================== ======================================= ================== 22 30 99.8 36 GATTAACCTTAACATGAGATGTATTTAAAT # Left flank : AGAAGAAGGCGAAAAAATTAAAGCATTAGAAATAGCAAAAAATTTACTAGATATTTTAGATAATAAAACAATAGCAATAAAAACTGGATTAACAGAAGAAGAAATAGATGCTCTTAGAAAAAAAGAAAGTAATTAGTGTTTTTAGGAACACTTAGGATTTAATTATCTTAGGTGTTTTTTTCTGCGCAATTCTATTAAAGTGTACAATTTAACTAGAATACTAAACAGTCTATTTTACCAGCCATAAATTTATATAACTCCCCTTAATCCATTGAAATTACAGCGCTAAAGTGACCTTTCAAAATTTTTATTAAAATTTGACAAACGGCTGGTAAAGTTTCCTTAAAACCTTGAAGTTTCAATGCCTTAATGGTATTATTGATTTTAGAGAATGGCTATTTTACTGTGG # Right flank : TACATTACAAACATCAGCACTGAACGTGTTGGTGTTTTTCGATTTTTATATGGAAAAATATAGAGTATAATAGAATTTGCAAAGAAATTTATAGAAATATAGTTTATATTAGATTACTATAAATAATAACTTAGTGATAGGGGTATTAATAATGAAATTTAATAAGAAGGGGAAGGTTATTGCTACTATTGTACTTGTGATTGCAGTAGTTATAGGAATATTTGCTTTTAAAATATTTCATAGAGTAACTAACTCTCCTATGATTAAAAGTGAAGATAGAAATGAGAAATTTATAGCAGATATTGAGTTCTTAAAAAAGGAATTACCTAAAAAGCATAAGAATTTATTCTTTTCTAAATCAAAAGAAGAATTTAATGATGAGATTGACTCACTAATTAACAATGTTTCAAGATATAGTGATGAAGAGATAAATGGTGAACTCGCAAAAATAATAGTATCTATTAATGACAGTCATACTAATGTAGATATTATGGGTTCAC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAACCTTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 15207-17203 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQAD01000044.1 Clostridium botulinum strain P85 Cbot_74_contig_92, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 15207 30 100.0 36 .............................. TAAAATAATTAAAGAAGATATTAGAATTATATTTAA 15273 30 100.0 37 .............................. GTATTATCGGAGAATTTAGAAAGTTCTATGTTCCCAA 15340 30 100.0 35 .............................. GGACATTAAAAACTTTGTAGGACTAGAATACAATA 15405 30 100.0 35 .............................. ATGTGATGTACTTGAAGGCGTATACCATTAAATTG 15470 30 100.0 36 .............................. GATAAATTTTTTAGTATACATTGTAGTAATCCACTC 15536 30 100.0 35 .............................. GTATTATTAGTATCAGTATTATTATACATACCAGG 15601 30 100.0 37 .............................. TCTATCATTACACAGCCAAATTGAGAGCCTAAGGCCA 15668 30 100.0 34 .............................. TCTATAACTCCATTCGCTGTAGGATCACTTGGAA 15732 30 100.0 37 .............................. TAATCACTATTTGCATCATCTTTTTTAATATCTTTTT 15799 30 100.0 35 .............................. ATCGAGTATGTCGATGGATATGCCAATAGAAGGTG 15864 30 100.0 34 .............................. TTGTAAATAGGCAATTTAAAAATATCTGTAACAG 15928 30 100.0 34 .............................. TAAACATACCTCCAGTTATTGTATGGTTATATTG 15992 30 100.0 34 .............................. TCTTCTGTATACTTTTTAAGTGCTTTTTCTATAG 16056 30 100.0 35 .............................. AAAATGAGAAATGTGGCAGGAATAAACACCAGTAA 16121 30 100.0 37 .............................. GCTTTATAGCCTTCTAATATTAATTTGGGAACTTTAG 16188 30 100.0 38 .............................. TCTAAAAATTTATTTCGGGAAATTTTCATTTATCGAAA 16256 30 100.0 34 .............................. TATATTTTTATTGCTAATGCTTCAATTGATGATG 16320 30 100.0 36 .............................. TAGTTTTAATTTTTTGTTATTGGGCAAACTAAATTC 16386 30 100.0 37 .............................. TTTTTGTATTCCTCCAATATTATTAATTTCCCACCCA 16453 30 100.0 36 .............................. TTTTTAAAAACCTGTAACTCTTCCATTTAAGTCCTC 16519 30 100.0 35 .............................. CCATAATCATCTTTTCTTATACAACGTTTTATTTC 16584 30 100.0 36 .............................. TTATTATTATGACTAGATGGGCCAGTGATGATTTAG 16650 30 100.0 36 .............................. ATTTGACTGTGTACAAGATTCATATTTAATATATAA 16716 30 100.0 35 .............................. ATTTTCAAATAGCTTGATTTTAGTTTTAGAATAAC 16781 30 100.0 34 .............................. CAAATTATAACCTCAAGTGGTTGTTTATTTATAA 16845 30 100.0 35 .............................. CTGCAATATGGAGTTGCTACATGATAATCAATTAA 16910 30 100.0 35 .............................. CAAGAAGGAAATACCACTGAACAAATATTTAATAG 16975 30 100.0 36 .............................. ATCCAACCAGTATCATCTACTGTCGCTATTTTTCTC 17041 30 100.0 37 .............................. GACAAAATTATAATATTTTTTTCTACATTCTTTTCCA 17108 30 100.0 36 .............................. CCTCTAATCTAAGCATTTTAAAACTTTTTCTCTATT 17174 30 90.0 0 .T..............A............A | ========== ====== ====== ====== ============================== ====================================== ================== 31 30 99.7 36 GATTAACCTTAACATGGGATGTATTTAAAT # Left flank : GCTCAGTCGGTAGAGCACATGACTTTTAATCATGGTGTCCCGGGTTCGATTCCCGGGTGAGCCACCAAAATATTGTCCAAAGTAGAAATGTGAGTTTTTACTTTGGATTTTTTATATTTTAGAGGAATAAAATATAATATTGATTAGATATTTTAGATAATAAAACAATAGCAATAAAAACGGGATTAACAGAAGAAATAGATGCTCTTAGAAAAAAGAAGGTAATTAGTATTTTTTAGAAACACTTAGAATTTAATTATCTTAGTTTTTTTTCTGTACAATTCTATTAAAGTGTATAATTTAACTAGAATAGTAAATATTCTATTTTACCAGCCATAAATTTATATAAAATCCATTAATCCATTGAAATTACTGGGCTAAGGTTGCCATTGAAAATTTTTATTGAAATTTCACAAACGGTTGGTAAAGTTTCCTTGAAACCTTGAAGTTTCAATGCCTTAGTGGTATTATTGATTTAAGAGAATGGCTATTTTACTGTG # Right flank : AATGGATTAAATATGATTATTTTCTATGCTTTTGGGGTACTTATCATAACTTTAAAATATAGTATTTTAGAATAAAAAGTGTATTTTTAGATCTTAATATTTATTAGGACTAAAAATGCACTTTTTTCACTTTTAACAAGTATTAATGCAAAATATGGTACAATATATATTAATTAGAAGAAATTTAGGTGAGGTAATTAAATGAATTTTATAGAATTAACAGCAACGGTAATGTTAAAAAAAGATATATATTTTGCAGATGGCGGATATATAATAGGTAAAAATATAAATAAGCTTATGTTATTAGATGAGGAGTTAAAAGAACTTCACCCTAAAAAAGAATATAAACATTATGTTTTTAATAATTTTTATCCATTAGAAAAAGATAAGTTTTATAAGAAAGATAAATTATATGTTTTTAAAATTAGGGGATTAAAGCACGATTTTATGCAAAAAGTACATAATTGTTTACAAATATTAAATAGTGATGATTTTAAAGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAACCTTAACATGGGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.00,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 26568-28360 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQAD01000044.1 Clostridium botulinum strain P85 Cbot_74_contig_92, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 26568 30 100.0 37 .............................. ACTATTGCCATATCGCTTGCAAAATGTCTGTTTCTAA 26635 30 100.0 36 .............................. AGTGTCTTCAGAAGGTGGACATACATATTTAATTAA 26701 30 100.0 36 .............................. GTTATATTATATCTTACTCTCGGCTCGTCTTTTTCT 26767 30 100.0 35 .............................. GTTATTCAACAAATAGAAAGCGATAAATTTAAAAT 26832 30 100.0 34 .............................. GCATCATATAAACCGGGAATACATTCTAAAGATT 26896 30 100.0 36 .............................. ATATATACGCGTATTTTTTTACACGTATTTTTTAAC 26962 30 100.0 35 .............................. ATTGGTAAAGAAATAATCTCTAGAGCTTTATTAAA 27027 30 100.0 36 .............................. GAATTTATTGAAAAAGTGATATGGATATTGTTTTCA 27093 30 100.0 35 .............................. AGCAATACTACCAGCTATTAATGCTTTAATGTCAG 27158 30 100.0 35 .............................. GATTTACTCCAAGCCTATTGGAAGGTAGCTTGTGA 27223 30 100.0 36 .............................. TTTGACCATAAGAATCAAAATAATACCAAATATTAT 27289 30 100.0 36 .............................. AATAATTTATCAATTTACCAACTAAGCAACTAATCT 27355 30 100.0 37 .............................. TCTATTACAATTAAACTCTGATGCTCTATACCCATTT 27422 30 100.0 37 .............................. TTGGGAAATTCAATGACATCTGCCGGATCTGCAATGG 27489 30 100.0 34 .............................. TAAACATACCTCCAGTTATTGTATGGTTATATTG 27553 30 100.0 35 .............................. ATATAGCTGGTATACAAGGAACTATACACTTATGG 27618 30 100.0 34 .............................. TAAATAGTGAAGGTGAAATGTTTAATGATCCTTT 27682 30 100.0 35 .............................. CATTTAATAGCCTCATTTAAAACATATTTATTATG 27747 30 100.0 36 .............................. GAAATAAGCCTATCCCTAAAAGGTTCTAACCCTTGT 27813 30 100.0 34 .............................. AAATTATGAATATAGCGATTTGAATGGAAATGAT 27877 30 100.0 34 .............................. CCAGTAGTTGTAGTAGTACCATCTCTAAGTTCTG 27941 30 100.0 33 .............................. TACATAGGTTATAAATATATTATATTTAATATT 28004 30 100.0 36 .............................. GCCAAAATATCTCCATCCTCTTCACTAACCATACCA 28070 30 100.0 35 .............................. CTTGTTAAATAATCTAGAAATAATTTTCTATTATC 28135 30 100.0 34 .............................. ATTACCTCTCCAGGTTTAAAGTTTACTAAATTTA 28199 30 100.0 35 .............................. AGTAAATTATCAGCATCAATAATAAGTAAAGGAAA 28264 30 100.0 36 .............................. TTAATAATACAACTTATATCATAACTTTTCTTTTTA 28330 30 93.3 0 ................G...........T. | G [28354] ========== ====== ====== ====== ============================== ===================================== ================== 28 30 99.8 35 GTTTAACCTTAACATGAGATGTATTTAAAT # Left flank : CACACTAAATTTAGATTTATAGTAGGTTTTAAAAAGAATTTAAAAACACATGATGGAATAGAAAAATGTTTTAATGAAACTGTTAATAATTTGTGGGATGAAACACAAAAAGAATTTTTAAACAAATCAGTAAGTGAAATAGTATGTAAATATTTAAAAGAAGCTCTTGAAGAAAAAGGACTTGGGGCAAAAACATCAATAGGATATGGTTATTTTAATATTGATAAAGAAGAAGAAAAACGAAAAAAGAATTAAAATTTAGCAAGAGCTGAAAAGATTTGTAATATATTAAGAATAGAAAAACCTTAAACAAGTAACAACTTATTTTACCAGCCATAAATTTATATAAACTCCCTTAATCCATTGAAATTACAGGGTTAAAGTGACCTTATAAAAATTTTATTAAAATTTGACAAACGGCTGGTAAAGTTTCCTTGAAACCTTGAAGTTTCAATGCCTTAGTGGTATTATTGATTTTAGAGAATGAGGATTTTACTATG # Right flank : TCCTATAATTTTTAAAGTTATTTATAAATTCAGAATAATAATATATAATATGTATAAGGAAATAATACAAATGATAGTGATAAATAAGAAGGGCGTGAAATAGCTTGATTAAAAAGCATGATTTTGATGTGGCATGGAGGCATTGAACACTTAGTGAAGTTTTAGCTGAGCTTAGTGAGAAAGCCCGCATTCATGAATGTGTTCATTAATCTATTAAAAGCCTTTGAAATAGAAATAGTAGAGCTACTTTTTCCAGAGATATTTGATAATATTGCATGGGAACTTGGAACTGAAAGTTTAGATCAAGAACTACAAGAAATTCAAAAGGATATTTTTGATAAAGATAGTGAAGAAAAGATAATATCAGATAAGATAATAAAGGTTAGATTAAAAGATAAAGGAAGTAAAATATTATTTATTCACGTAGAAGTACAGAGCTATAGTAGCGATGAAGCTGTATTTGGCGAAAGAATGTTTAGATATTTTTATAGAATTTGGGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAACCTTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [68.3-86.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 42015-42566 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQAD01000046.1 Clostridium botulinum strain P85 Cbot_74_contig_33, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 42015 30 100.0 36 .............................. GAACTACACATATTTGTATCTATTTTATAATCATAA 42081 30 100.0 36 .............................. AAAAATCCAATAAAATATTTATTGTTACCATTATTA 42147 30 100.0 34 .............................. AGTAGATGAGTAAGCCTATAATATGGTGCTTTAA 42211 30 100.0 35 .............................. TTTTTTCATTTCTCCCTTGTTTTTTAGAGTAACCT 42276 30 100.0 38 .............................. GTAATTAATTAATTCAAACATTATATTTACATCTGTTT 42344 30 100.0 34 .............................. ATAGAACATCTAGAAAAATTAAATAAAAGTACTA 42408 30 100.0 35 .............................. CCTTCAATTAGTCCCAATGTTTTAGATTCTAATCT 42473 30 96.7 34 ................G............. AATAGCAGGCAATAGATTAGCACCAATAGGGTGT 42537 30 93.3 0 ...............AG............. | ========== ====== ====== ====== ============================== ====================================== ================== 9 30 98.9 35 GATTAACATTAACATGAGATGTATTTAAAT # Left flank : AGACAGTGCAGAAGATATATTTAATAAAGTTAATGATTATATTTTAGACGGAATGCCATGCGATAGAGTAAATGAAATTATAAATAGCAATGAAAATTGTGTGAAATGGACTAGAAGAATTTGTGTACATAAAGAAATTTGGGATAAAGAAAGTGGAAATGTAGAGTACTTTTATTTCCTAAGGAGTTTATGGATTAAAGCTTTTGTAAATGAAATAAATACTGAATTTGATTATTTAGAAGACAGTAAAGGGGTAAAATCTATAAGAAGAAAATAAAGATTTTTATAAAAATATACATTTGTAATTTAAGACAAGCTTTATTATTTTACCAGGCAATTATTTTAATGAAATCCTATTAAACCTAGATAAATACAAGGATTATATATAATACAATAAGTTGTTATCAATATTATAAAATCACTTGGTAAAATATTGATAATATGTTACTATTACTGTATTAGAGCGATTTTATTATTTTAAGAATGGCTTATTTTCAATG # Right flank : TCCATAATATACTGGTGTTGTTATGAAGAATAAGCCTAACCTAAATTTTAGATTGGGCTAAATATTACTAAATAGAATAAAACATTAATTAAAAATATTTTTATCAAACATTTCTATAAAATTACATGAAATATTTGATAGAGGTTTATTTTTAGGCCATATTAATCTTAGATATGACTCAATTGATGGTTCTATTATCTTTTTTATCTTTAAATTAACATTGGGTAAGATATTAGAAGCAGTAAGTGGTAAAATAGAAATTCCAATTCCAGCTTCAGCCCAACTTAAAGAGGTAATAATATCATCATTCTTACATATTATATGTGGTTCAAAGCCTGCCTTATTACAAGCATTTTTTATAACATCATCGTATCTTCTATTAATTATTAATGGCTTATCTTTTAATTCGTTAATGAGAATAGTGTTACTTTCTATAGAATTATAGAATTTAGATTTTGCAATTGTAACAAAATAGTCATTTAAATTATTTTCAAGGTTAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAACATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //