Array 1 579314-580468 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP075363.1 Streptococcus thermophilus strain Moz109 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 579314 36 100.0 30 .................................... GACGTTCAATGAAATATTCTTATCAGACAT 579380 36 100.0 30 .................................... TCTGACGATAAAGAGAATATCTCAAAGGGT 579446 36 100.0 30 .................................... GGGTGCGATGGATTCAATGACAAAGAGCAC 579512 36 100.0 30 .................................... TAAAACTTACTGCAGACAGTGTTAATTATC 579578 36 100.0 30 .................................... CACAAAATAATTCGGTAGTTTTTACTAACT 579644 36 100.0 29 .................................... TTTGACCGTTTATTTAGACGTGCTAAAGT 579709 36 100.0 30 .................................... AATATCTACAGGTCACTACAAAGCTACGCT 579775 36 100.0 30 .................................... TGATAGAGAATGGTCGTTAAATGGTGTAAT 579841 36 100.0 30 .................................... TCAGTTTCAAATGCTCCACCACCGATATTA 579907 36 100.0 30 .................................... GTTCGGGTTCAGGTGGTTTTATACTCAACT 579973 36 100.0 30 .................................... AACATGCATCAGTTTGGATACGAGGTCAAG 580039 36 100.0 30 .................................... CGAACATTGCAGAACTGGGGAAATGGGTAC 580105 36 100.0 30 .................................... TAAGAAACCTGTCGGAGAAGCTAAAAGCTG 580171 36 100.0 29 .................................... CTCACTAGTCCATTAGTGCGGTTAGGGAA 580236 36 97.2 30 ...............G.................... TGGTACTACACCTCAAACGGTGAGTGCATG 580302 36 100.0 30 .................................... GCAACAATGGTTATAATTATCCCACACAGG 580368 36 100.0 29 .................................... GCATACGCTGTTACAAACACACCCCACCC 580433 36 94.4 0 ..................................GT | ========== ====== ====== ====== ==================================== ============================== ================== 18 36 99.5 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : ATTGATGGCTTTATCTCAGAAGAATCTTATACTATTTTTTATAGGAAAATCTGTCATCTGGTCAAGAAGTATCCAAATCTAACCTTTATTTTGTTTCCTAGTGACCAAGGCTATTTAAAAATTGATGAAGAAAATAGTAGGTTCGTCAATATTTTATCTGACCAGGTGGAGCATTTGTATGATGTTGAGTTTATGTATGAAAGGGTAATGAAATATTATCCAAGTAATGATTTTCCGACGAGAGAAGGTTTTAGGATGTCTTTAGAAACTGTGACACCTTATTTATTGACAAAAATGCTGAGACAACCTAGTCTCTCACTTGTTGATTCAGTAATATTGAATATCCTAAATCAGCTGTTTCATTTTAGTTACCGTATAAGATATTCTCAGACACCTGATAAGGAACTATTACATAAATTTTTAGAAAGTAATGATTGACAAGGACAGTTATTGATTTTATAATCACTATGTGGGTATGAAAATCTCAAAAATCATTTGAG # Right flank : TTTGATTCAACATAAAAAGCCGGTTCAATTGAACTTGGCTTTTTAAAATACACGATAAACATAAGGATTGTCAGGCTGACTAACCTCTTTAATCTCAGTCAAATTAAGGATAGGGAGGCTCTGTTTAAGGTTTTGATAATAATTCACAGTGATGGTACCAGTGACTGTTACCCAGGTATTATCCTTAAAGGTTTGGTCGCTTCCTGTCGTTGCCAGTCCGTAAACACCTGAATCGGCGATACAGTGGATAATACCGAAACGGAAGATGAACTGATATCCCTCGGTCTGCGGGTCATTGTAAACAAAGCCGGTATAGGTGACCTTCTTACCCACGAAATCGTTTGGATAGAGATAGATGAGCTCCATGACTTCCATGTAATTTTCCGTGGTAATCTGGATGGTCTCACGTCCCTTGTACCTGGCTAGCTCCTTGGTCATCTCCTTCTCATAAGCTGAGGAGGTGAAGTAGGAGCTGGTGTCCGGCCTTAAGTACTGGATAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 828865-828613 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP075363.1 Streptococcus thermophilus strain Moz109 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 828864 37 100.0 35 ..................................... ATGAAAATTACTAAAGCGATAAATATCCAGCGGAC 828792 37 100.0 34 ..................................... TAATTACCGTGGGTATCGCATTAGATTGTGGATT 828721 37 97.3 35 G.................................... CTTTATAACTCTTTTCTAGCTTTTGATAAGCACTC 828649 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =================================== ================== 4 37 99.3 35 AGTTTCCGTCCCCTCTCGAGGTAATTAGGTTTATATC # Left flank : TTCTTTAATTATTACAAAGACAAGCTATTAAAAGATTTTTAAACCCCAACCACAATAAATGGCTGGGGTCTCTTCATTATAATCCGACTTCTTTTAAGGCATCCGCCAATCTTGCAAAATCGGCAATAGATAAAGCTTCTCCACGAATGGACGGCTTGATACCAGCTGCTTCCAGAGCCTTTTCTAATTTGGTCTTGACCTCTTCTGACTTCCCGAAGTGACTTGTCAAGTTGTTCCAAAGGGTTTTACGACGGTGAACAAAACTGATTTTAGCAATGCGGAAGAAGAAATCTTCGTCTTTAACTTGAACAAGTGGTTGTTCACGGCGGGTCATCTTGAGGATGGCTGAATCAACGTTCGGCGCTGGCACAAAGACTGTACGTGGCACGATGAAAGCAATTTTTGCTGTCATGTAGTATTGCACCGCAATTGAAAGTGAACCGTAAGCTTTGGTATTTGGTTCTGCTGAGATACGGTCCGCTACTTCTTTTTGCATCATC # Right flank : CCCATATCTTATGCTCTAGGCAGTTGCTAGAGGCACAAGATGTAGGACCTACTGGAAACACTATCTATAGTGTACCATATGATTAAAGGTCTATAAAGGCTTAGAAGAAGAGAATGTCATCTAATTTTTCAGCACTATGGTAGGGACTAAAACTAGTCACCTCTTCTTTGGTTGTCACATACACTATTATGCTGTCTTCTTCATCAGCCTTGTAGAAACCCTCAATATCCTTAAGGAGAGACTGATAATCATTTCTTGACAGGTCGACCTCGAAACAGGATTTTTGCACCCTCACGCCATAACCCTCAAGTAATTTCGAGAGTTTAAGTCTACGTTTGTTACTTCGGATATCATAAATAATCAGACAAAACATGGTTTTTTGTTTGGCAAACTCACGCTCTTCTTCGCTGAGGTTAAAGTAAAGTCCCATTAATGCCCTCCTGTGTAACTTGTCTCATAGAGACTAGGGTCAAGTTCTCTAAAAGCCCTAATCAAACTCT # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTTTCCGTCCCCTCTCGAGGTAATTAGGTTTATATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.70,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 3 1312267-1310712 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP075363.1 Streptococcus thermophilus strain Moz109 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1312266 36 100.0 30 .................................... GGAATTCACATTTATGCCACGGGGTGGTAG 1312200 36 100.0 30 .................................... CTAAGGTTTGATGATGTCGTACAGTTCTAC 1312134 36 100.0 30 .................................... TATACGCAACTTCCATATCTACAAAAGTCG 1312068 36 100.0 30 .................................... ATCTGGTTCAATGCATACTGATATGGTTAA 1312002 36 100.0 30 .................................... ATTTGCACCCTTTAACATCCATGATGTAAG 1311936 36 100.0 30 .................................... AAGTAATGCTAAGAAGTTAGCCGATTATTT 1311870 36 100.0 30 .................................... ATGGGATTGGTTCGATTAGTGAAAGCTCAG 1311804 36 100.0 30 .................................... GATTGCTTGGGCAATTTGCCAGTTTGGTTT 1311738 36 100.0 30 .................................... TAATACAGTTACATTGTCTTCATATGGTCG 1311672 36 100.0 30 .................................... TCGTTCTACTGTTAAACCAGTCTTAAAGCA 1311606 36 100.0 30 .................................... AATGACAAGAGTCGAGTTAGCCGAAAAAAT 1311540 36 100.0 30 .................................... ACCCTAAGATTCAGTGGATGCGTATTACCG 1311474 36 100.0 30 .................................... GACGCTTATGGAAATAACCTACAAACCTGT 1311408 36 100.0 30 .................................... TGTTAGGTGTAATAAATGTAAAAGTTATAA 1311342 36 100.0 30 .................................... ATCAAGGTTGTTAAATTCAAAAGCCACCGT 1311276 36 100.0 30 .................................... TCCATGCGTTTATTTCTTCGTCAAGCGTGT 1311210 36 100.0 30 .................................... TACCTCCCTGGCAACTTGCCCTAAATAGTT 1311144 36 100.0 30 .................................... CCAAGGGATTCAAGGACCACAAGGCCCTCA 1311078 36 100.0 30 .................................... CTCAATGGTTGAGGATTATCTTGAAAGTAA 1311012 36 100.0 30 .................................... CATCACTGACATGGGCGATGGCGGCTACTA 1310946 36 100.0 30 .................................... CGGGCTTAACATTCCACACAATATCCAAGA 1310880 36 100.0 30 .................................... AATCTGACACAGCTAACCACATGAGCGACA 1310814 36 100.0 31 .................................... CGGACAGCGATAAATACACTCTATACAGAGA 1310747 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 24 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : AGAGAATTTTAGTATTCGTCAATAGCTTGTCGTATTTTTCTAAAGATGAAATTTATCAAATCTTGGAATATACAAAGTTATCACAAGCTGATGTATTATTTTTGGAACCTAGACAGATTGAAGGGATTCAACAATTTATTTTAGACAAGGATTATATTTTGATGCCCTATAATAACTAGTAAATTAGTAATAAGTATAGATAGTCTTGAGTTATTTCAAGACTATCTTTTAGTATTTAGTAGTTTCTGTATGAAGTTGAATGGGATAATCATTTTGTTAGAGAGTAGATTATAAGGATTTGATAGAGGAGGAATTAAGTTGCTTGACATATGATTATTAAGAAATAATCTAATATGGTGACAGTCACATCTTGTCTAAAACGTTGATATATAAGGATTTTTAAGGTATAATAAATATAAAATTGGAATTATTTTGAAGCTGAAGTCATGCTGAGATTAATAGTGCGATTACGAAATCTGGTAGAAAAGATATCCTACGAG # Right flank : TTTTGTTATCACAATTTTCGGTTGACATCTCTTAGAACTCATCTTATCATAAAGGAGTCTAGTATTGAAATGTGAGAAGGGACATGTTATACGAATATCCAGCTATTTTTCACACGATTGAGGAATCTTGCAGGATTAGTTTTCCCAATTTTGGTCGGATTATTCAGGTAGCTTCTTTATTTAATGTTATGACGAAATCGTCAGTATTTTTGGCTTATATTATTTATTATTATGTGGACCAGGTCTTGCCTGATTTGACGGCAGTAAGTAGTATTCCTAATGAGAAAGAGCTTGTGGTTTTGATTCAGTTAGAACTTGATTGACAGCAAAAAACTCTTGGAGGATAAATTTCCAAGAGTTTTAATTTTTATTAGCCACATAGACTCCAAGGACTACCAAGATTCCCGCTAAGATTTGTAACTGTGAGAAGGGCTCTCCTAAGAAGACTACAGCAGCTAGAATTGAGATAATCGTTGATATGCCAATGAAAGAAGCAGTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //