Array 1 11821-15881 **** Predicted by CRISPRDetect 2.4 *** >NZ_NAQJ01000009.1 Bifidobacterium longum subsp. infantis strain 1888B Contig_9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 11821 33 100.0 34 ................................. AGGTTCGAGCTTGACCATTCGCCCAGGTTCACGT 11888 33 100.0 33 ................................. CGCGCGTCATGGGACTCGATGACGAAGGGAGAA 11954 33 100.0 35 ................................. CTCGACCAAGATCAGCCCGTCCCTATCGTTGAATT 12022 33 100.0 34 ................................. ATCGCACGCATGATCAGCAGCCTGCCCCTCAAGG 12089 33 100.0 34 ................................. CACTTGTCCTTGGTCTCTATGGGGTTGCCGCCGC 12156 33 100.0 34 ................................. AACGCTTCCTCGACCTGCTGGTCCCACCGTTCGA 12223 33 100.0 34 ................................. ATTATTTCTGAAGGGATTTTCCCGAAGAAGCGGC 12290 33 100.0 35 ................................. CCGTGTGGGGTTGGTGCGGCTCATTTGACGAGGTT 12358 33 100.0 33 ................................. CTCAGTAGGAATTCTGGCGTGATCGTCAAGACC 12424 33 100.0 35 ................................. GGCCAATGTGGCCAAGTCCGACGCGGCTTCGGCCA 12492 33 100.0 35 ................................. AGGACGTCCCAGCTCTTCGCGTCGGGATCGCTGTA 12560 33 100.0 33 ................................. CCATATCGCAACTGCCTTATCTATGTCAGGCGC 12626 33 100.0 35 ................................. CCAAAAATACTATATCATGATGTCCGTAAAAACAA 12694 33 100.0 37 ................................. TACAACATCCTTAACCAGATATTCAAGGCGGCGGTGG 12764 33 100.0 33 ................................. CATGTGGCGGAAACACCAACTCCGTCTCCCTCG 12830 33 100.0 36 ................................. ATTGACCCCACCATGAGTGTGGAACAACGGGTATGC 12899 33 100.0 34 ................................. ATGGACGCGTACTGCGCCTTCCACAGCATGCAAT 12966 33 100.0 33 ................................. TTCCTGTAGTTCTTGCCTTTGCCTCTGTTGATC 13032 33 100.0 35 ................................. ATCACTATGTCGCCTATGGAGACGCCCGTCACCTC 13100 33 100.0 34 ................................. TCGCTCTCATCGGTGGTGGTGGGCTTGGCGGACT 13167 33 100.0 34 ................................. TTCGATACGCTTCGCCTCCGAGATGATGTCCCGG 13234 33 100.0 34 ................................. AACAACGTCGAAAGCATCGAACAGGTGGAGGCCG 13301 33 100.0 35 ................................. TCGGCACGATGACGGCGGCCTCCTCACCGGCTTCG 13369 33 100.0 34 ................................. CAAGCGGAGCCATCCCACACCAAGGTGTCGATCA 13436 33 100.0 36 ................................. TCGCCAAACGGTTCGGCGGCACCCCCTGGGCATGGC 13505 33 100.0 35 ................................. TTTTTATAAGGCGCAATGCGCAGGAATGAATAAAA 13573 33 100.0 36 ................................. CATACCCACCGGCTCGCACAAAACCCATAGGCGAAC 13642 33 100.0 35 ................................. CAATCCGAGCGCGCTGCAGGTCATGAAGCATGAGA 13710 33 100.0 33 ................................. GCCGTCGCCGTTTTCATGGGCTTATGGCAGTGC 13776 33 100.0 34 ................................. AGGTCATGCAGCATTCTGTTGGCGCTCTCGTATC 13843 33 100.0 33 ................................. GATTCCGATTTGGATGATGTGGCGCGCACCATC 13909 33 100.0 33 ................................. TTGATGATGAACCGGCCCCGATCACTCAAGAGA 13975 33 100.0 35 ................................. ACCTGGCTGAAGGGCGCCGTCACCGGCGACCATCA 14043 33 100.0 36 ................................. CTGATGGCCGGACTGACCGACTCCTACCAGTCGCTG 14112 33 100.0 34 ................................. CAAAAACTCAACCAGCTCGTCCTGGAAAAATAAC 14179 33 100.0 34 ................................. ACCTACACGGCGTCCGGCGGCGTGATCCGCTGCC 14246 33 100.0 32 ................................. CACGTGAGACGCTATTGCCCGCAACCCGAACG 14311 33 100.0 34 ................................. ATCGAAAACGCCCACGCCGCAGGCATGAGCGAAC 14378 33 100.0 35 ................................. CTGGACGGACGGCGAGGTGCTCATAGACGAGGATC 14446 33 100.0 33 ................................. ACGATCCTCGGCAAGCGCAGGACGCTGGCCATC 14512 33 100.0 33 ................................. CCGCTGACCGGCGATACGGCGACGCTCGAGAGG 14578 33 100.0 36 ................................. GACGTATTCGCGTAGAAGAACCGGGCCTCGGCCTCC 14647 33 100.0 34 ................................. GTCGGCTGTCAGATACACGTGGCGTCGACGCTGT 14714 33 100.0 35 ................................. CAGTACGTGAAATGAGACATTGCCATAAGATTCGC 14782 33 100.0 33 ................................. GGAGTTGATGATGATGTTGTGGCCTATTTGGAG 14848 33 100.0 34 ................................. ATTGTCCTCATAGGAGGGTGTACGAACTACGGTA 14915 33 100.0 35 ................................. CAGAAGGTTTCGGCCTGCTCCCCTCATCACCGGAT 14983 33 100.0 32 ................................. TCCATGGTGGAGGTATTGCGCGCCGAGGCCGC 15048 33 100.0 33 ................................. GAATGCAACCATCGACAAGACCGGCAAACTCAC 15114 33 100.0 34 ................................. CTTCGAATGGAGAACGTGTTGGCCGATGAAGCGT 15181 33 97.0 36 ...........T..................... ATGTCCGCAAACTGCATGGTCTGCTGGTTGCCGAGA 15250 33 100.0 36 ................................. AACCAATTATACGAGTCCGCGCGGAAAAAATTCGAC 15319 33 100.0 33 ................................. CGTTCGTTCGTGGACGAATGGGGCGGGTTGAAA 15385 33 100.0 34 ................................. AACGACATCGACTACCAAATCGGCATCATGCTCG 15452 33 97.0 35 ..................C.............. ACGGTGCGCACGTCCGTGGGGTCGCCGTTCTGATA 15520 33 97.0 35 ..................C.............. TGGAACTGTACGCCGACCCGACAAGCAAATACCAT 15588 33 100.0 33 ................................. GGCATGACGTGCCAGCCACATTCGCGGCGGATG 15654 32 87.9 33 .......T..A.-T................... CTGAAAGGCGACAGCCTGTACATAGCCGGCGAA 15719 32 87.9 33 .......T..A.-T................... CTGAAAGGCGACAGCCTGTACATAGCCGGCGAA 15784 32 90.9 34 ..........A.-T................... TGCACCGCACTGGGGTTATCGAATGGTAACGCAT 15850 31 93.9 0 ......--......................... | T [15864] ========== ====== ====== ====== ================================= ===================================== ================== 61 33 99.2 34 GTCGCACCCCTCACGGGGTGCGTGGATTGAAAT # Left flank : GCGGAACGTGGCCAAGATTTGCATGAGATACGGTCAACGCGTGCAGAACAGCGTCTTCGAGTGCTCCGTATCGCCGTCCGATTACCTGATTCTGAAGCATGATTTGGCGGCGGTTATGGATGAGTCGCAAGATAGTCTTCGATACTACAACCTCGGGGCGAAGTATTCCTCGAAGATCGAATATCGAGGAAGGCAGCGACACATGCCTGTTGATGGCGTGATGATGCTTTGATGCCGGATTGGTGTGTGGCGTGTGGATGTTGGTCGGTGCGAGCTCCAAGCTCTCATGAAGTACCGGGCTGTTCGCACCACGGTTGAGGACTTTTGAAGACGGTGTATGTTCTTCTTGCTGTTTGATAACTCAAGAGTGGATGATTTGCTGGTATTTCGATTCGGCAGATTTGCGTATCTGGGGGAGATGCGAGTGGGTTGTACAGTACAATCGATGCTAAGGAGTGGTCGGAGTGTCCGTATCTTGGGATGCGAAGTCCATTCCCGCG # Right flank : TACAGGATTAGCCGGTGTCCCCAATGCGGGGCAAGGTCAAGGCGAAGTGGGAGGAGCAGCATTATCTAGCTGCTTTGGTTTTTCGGCGCGGGGGACGCAGGTGCAAGCCGCATACTCTCGCGTTGAAGTCGAAGCCCGCAGTGGCGTGGGAGTGGCCGAAAGGCATGATGCTCGCCGCCGCGATTCGACGTTGGAATGCGAAGTGCAAAGGGTGATGGGCGGCTGGCGTGACAAGGCCGCTTGCCGGGACATGGACCCTGACTTGTTCTTCCCCGCCACGCGGCAGGAGGAACGATTGGCGCTCAAGGCCTGCTCCACGTGCCCGTCGATACGCGAATGCGCACGGTACGCGGCGGAACATGCACGGATAAACGGCTACCCGTTGCAAGGCGTATGGGGCTGGATAAACAGAAGCAAAGGCAAGAACAAGATCGGCTGGCAGGAAAGAGCAACCATGAGCATTACGAACAACCAGCGTGAGCTGATACTCAAATGGCACA # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCTCACGGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCTCTCGCGGGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-37] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //