Array 1 10430-11053 **** Predicted by CRISPRDetect 2.4 *** >NZ_MPFM01000109.1 Clostridioides difficile strain 7481-NonSp/ST59 LCH7481_contig000109, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 10430 29 100.0 37 ............................. ATAAAATATAGCTAATTATTAGATTCAATTTTAATTT 10496 29 100.0 37 ............................. GTTCCAAGAATATTATTTGATAGTTTAGATGATTATT 10562 29 100.0 37 ............................. TGTAATGCAAATGAGTCTAGGCGATAAATTTTCTGAA 10628 29 100.0 37 ............................. TAATAGCAAGGGCAATAGGAGCAACAGCAGAAATTGC 10694 29 100.0 37 ............................. GCAAGTAACATTCTTCTTAAAAGTTCTTTTGGTGTTG 10760 29 100.0 37 ............................. TTTGAATTAAAATTTCTAAAAAACTAAAACTACGTTT 10826 29 100.0 38 ............................. GTAATAGCAATGGAATGGACAAGAAACACATATCGAGG 10893 29 100.0 38 ............................. ACATTTGCAATTTAATGTTAACTATCAATACCCCCAAT 10960 29 100.0 36 ............................. AACAAAAAAGATACATCTGTAACTAATTTTTATACT 11025 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ====================================== ================== 10 29 99.7 37 GTTTTATATTAACTAAGTGGTATGTAAAG # Left flank : CTATTAACTTATTAAATATCTGTAAATGAGCAGATATTTAATAAGTTAATATTTATTGTTTACATAAAATATTTGGTAAAAATAAGTAAGTTTTATATGTTATAATAGTTGTAGCAAGAATAATAATCTAAAGTGGCAAGCATGTCAGCTGGTGTTATATCAGTTTATATTTATGATAAAATAAAAATCTCCCAAACGCCAATAAGAATGATTTAAAAAAATAATATTTTCACTTAAAAATAATCACTCTTTATAGGAGTAAATTATTTTCTTGATTTTATTATACTACAAATTGGTACAGATATTTAAAAATAATATATTCATAATATTATAAATAGTTTTGCAGTGAGCGATATTTTTGATAAAATAGGGCTTAACAGTTGAAACATAAGGCATTGAGGGTATATGATAAATATTATCATTTGCACTACTCGTGGTTCACTGCAAATTTGAGAGAATTGTATAGATGTAAGTGTTGGAAATACTCAATTTATTTTGGG # Right flank : GACAGATATAATGTCAAAATAAGGTTAGGACTTTTAAAAGCATAGCCATATCAGTAAAAATTTAATTATCATTTAAAAAATAAATTTTTATTTAAAGAATACACATAAATATTTCCAGACTCAACTCTCTTAAACTATTTTCATATCTTTTAGTAGATACCTTTGTTGTTTTTTAATCTTTAGCAACTTGTTCTTGAGTGAACCTCTTATTTTTTTTAAGTTATTTCAAGCTTTTCAAAAAATTCTCTATTTATATTCATCACACATATAATACAATTAATTCAGTTTTAATTGCCAATATTTAGTTTTTCTGTATCTGATAAACCAAGAATATAATCAGTATATAAACCAAAAATTTTAGCAAATATTATTAACCCATCGTCTCTTGTTGGTCTTTCACCAGACTCTATTCTATTCATAACACTTGTATTTATATTTGTTTTTTCAAGCAATTCTTTTTGAGAACTATTCATATTTTCCCTAATATATTTAATCCTTTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 8542-9423 **** Predicted by CRISPRDetect 2.4 *** >NZ_MPFM01000120.1 Clostridioides difficile strain 7481-NonSp/ST59 LCH7481_contig000120, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 8542 29 100.0 37 ............................. TCAAAAGTTGCGTTTTCTTTTGCATTACCAGCAACTA 8608 29 100.0 38 ............................. ATGAAAGGATTAACAAGTAATAGATCCAATCCTTGCCA 8675 29 100.0 36 ............................. TGATGTCTGAATGCCCTCTAAATCTGTTCTGTTCCT 8740 29 100.0 36 ............................. ATTACATTTAATTTGCATTGCTTTGATGACTTCTTT 8805 29 100.0 38 ............................. GAGGAGATTCAGACAGCGACTAAAAAGACTGATATAAA 8872 29 100.0 37 ............................. AACTTTATATCTCCATTTGCATATCCATCTGATGAAC 8938 29 100.0 38 ............................. GCGTACAAGGTTGAGAAGCTCCGCAATCTCAACGTCGT 9005 29 100.0 36 ............................. CAGCCAAAAACTTCGAATTTGAACTAAAATGCGTGG 9070 29 100.0 35 ............................. TAACACTCTCTACTTGCAAATATAAATATAAACTG 9134 29 100.0 36 ............................. TTAGAATCAAAAGCACTTAATCCTAGTTCTTTCATA 9199 29 100.0 37 ............................. AAAAGTTGCACGCCTATTTGATTTTTCAATACATTAT 9265 29 100.0 36 ............................. GTTCCTGTTGTGTTTTTTACTAATCCCATTTTATAT 9330 29 100.0 36 ............................. TGCTGTGATTTCACTAATAAAACAATTAATAATTGT 9395 29 86.2 0 ................G....T.CA.... | ========== ====== ====== ====== ============================= ====================================== ================== 14 29 99.0 37 GTTTTAGATTAACTATATGGAATGTAAAT # Left flank : AATAATGTAGATAATGTTGAAAATTTAGAATTCAATGAGTTTGAACTTAAAACCGAAGAAGAAGAGAAGCGAGAACAAGAGAAAATAGAACAAGAAAAAAACAGTTATAATAACTACATTCAAAACAGAGTGGTTGACCCACTAGATAGAATAAAGAAACTAAAAGAGTTGCTAGATTCAGGAGCAATTACACAGGAAGAATATAATAAAAAGAAAAAAGAATTATTAGAATAGATAATATAGTAAGCACTTACAAGTATGTAGGTGCTTTTAAATTTACAAAGTATTCCATTTTAATTTTATAGTTTAGATTTTATGATATAATAAAAATATAGAAGTTTTGCAGTGTGCGATATTTGTTACAAAGTAGGGCTTAATACTTGAAATCTAAGATGTTGAGGGTGCGTGATAAGTGTTATCAATTGCACTATTGCCCGCTCACTGCAATTTTAAGAGTATTGTATATATGTAGGTATTGGAAATGCTAAGTTTATTTTGGG # Right flank : TTAAATAAACAAAGAAAGCACTTACAAATATGTAGGTGCTTTTATTCTGCTCAAAATTGGTTGGTTGGGTAAAATAATTAGAAAAAGTTAGTAAAAACCTATTGACTGTAACTCGTTACAATATTGTTATTAATGTAACGAGTTACAGAAAAGAGGTGAATAAAATAGCAACTAAAAGTAGGGCAGAGTATATGAAAAATCGTCGAAAAGATAAAAGAGGTTTTAGTGTACTTTTAGACAAAGAAAAGTTAGATAAATTTGATGAAGTATTAGAGGAAAAGAATCTAACCAAGAAAGAATGGCTAGAAGAAAAAATCGACGAGGAACTGGAACAAAAGGAATAAAAAATAAGGGTCACTCCCACCGACCAAAGTTTGAGTAACCCCTATGACGTATACTATCGTATATCAATTATAGTATATGTCATTCCTTAAAAAAATCAATTATTAAGGAGTGTAATATTATGAAAAATGAATTAATGATGTTTGAAGGAAAAGAGA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 12065-12424 **** Predicted by CRISPRDetect 2.4 *** >NZ_MPFM01000114.1 Clostridioides difficile strain 7481-NonSp/ST59 LCH7481_contig000114, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 12065 29 100.0 38 ............................. ATAGAAAATGGCGATAAACCAATTCGTAGATTGGATAC 12132 29 100.0 37 ............................. ATAAACATAAAAAACATTGATAGTAATATATACTATG 12198 29 100.0 38 ............................. TTTGAACTTAGTTTCATATCATTATGATACTGCATTAG 12265 29 100.0 36 ............................. TCAGATAGACAAAAGGTTTATGAATATATAATTAAT 12330 29 100.0 37 ............................. ACGCAATTTACTTCATACCACCCATCTGCACTAAGTA 12396 29 86.2 0 ......G..............C.TA.... | ========== ====== ====== ====== ============================= ====================================== ================== 6 29 97.7 37 GTTTTATATTAACTATATGGAATGTAAAT # Left flank : CTTATTTTTAAATAAACTAATAATAAGATTAAATATAATAAATCCAACCGTTGAGCCCAAAGCACTAACAGGTACTGATGTTATATTAGAAAAATTATTCAACGCTGATAAACATACCATTACTATAGAAACTATAACTAAATAAGATATTACTGTAAAAAATGGAATTGAAATACTTATATTTAACTCTGCTTCATATTCTTTCATAATATAATTCCTTTCAAATTAATTTTATTTAACTTTATTATAGCATTTAAACATAATTAAATGTAAAAATACAGTCAGAAATTAACTAAAAATATCAATTATATGTTATGATATAATAAAAATATAAATAGTTTTGCAGTGCGCGGTATTTTTGATAAAGTGTGGCTTAAACATTGAAATATAAGGCATTGAGAGTGTGTGATAAGTGTTATCAATTGCACTACTCATGGTTCACTGCGAATTTGAGAGATTTGTATATGTGTAGGTATTGGAAATACTCAATTTATTTTGGG # Right flank : TTAAAAATACTGAAAAACACTTACTTTTGTGGTAGGTGCTTTTTTATATTCAAACCTGTGTACTTAATTGAAATATTTGGTAAAATATGTAAGAATTATATGATATAATAATTGTAGCAAGGAAAATAAAATCGAAAAGCTAAGGGTGATTTTCTCATATAAACGCCAAATTCCAATATAGGAAGGAGGTGAATTTATATGTTAATTAACTTTTTATTGAGTATAGTAGCTGGAATTGTGTCAGCTTACATTTACGAGAAAATAAAAAATCACCCAAACGCCAATAAGGGTGATTTAAAGAAATAACTTTTAAATTCTAATCAATTAGAGAAATTCACCTTTTACAAAGTAAATTTTATCTCCTTGCTATTATTATATCACAAATTTATACAGATATTCAAAAATAATATTTTTATGATATAATAAAGTCATAGAAATTTTGCAGTGTTCGATTTTTTGAAGAAATTAAGGCTTAACAGTTGAAATATAAGAAATTAAGG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 13023-13175 **** Predicted by CRISPRDetect 2.4 *** >NZ_MPFM01000114.1 Clostridioides difficile strain 7481-NonSp/ST59 LCH7481_contig000114, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 13023 29 100.0 38 ............................. AACTCTAGTGTGTAATGACACAAGAATATTTTATTTAG 13090 29 100.0 37 ............................. AATGAATCTTAATAAAATATAACTATGTATTTTCATT 13156 20 69.0 0 ....................--------- | ========== ====== ====== ====== ============================= ====================================== ================== 3 29 89.7 38 GTTTTATATTAACTAAGTGGTATGTAAAG # Left flank : ATGATATAATAATTGTAGCAAGGAAAATAAAATCGAAAAGCTAAGGGTGATTTTCTCATATAAACGCCAAATTCCAATATAGGAAGGAGGTGAATTTATATGTTAATTAACTTTTTATTGAGTATAGTAGCTGGAATTGTGTCAGCTTACATTTACGAGAAAATAAAAAATCACCCAAACGCCAATAAGGGTGATTTAAAGAAATAACTTTTAAATTCTAATCAATTAGAGAAATTCACCTTTTACAAAGTAAATTTTATCTCCTTGCTATTATTATATCACAAATTTATACAGATATTCAAAAATAATATTTTTATGATATAATAAAGTCATAGAAATTTTGCAGTGTTCGATTTTTTGAAGAAATTAAGGCTTAACAGTTGAAATATAAGAAATTAAGGACTTGTGATAAGTGTTATCAATTGCACTACTCATGGTTCACTGCGAATTTGAGAGATTTGTATATGTGTAGGTATTGGAAATACTCAATTTATTTTGGG # Right flank : | # Questionable array : NO Score: 4.85 # Score Detail : 1:0, 2:3, 3:0, 4:0.49, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:77.42%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 1483-135 **** Predicted by CRISPRDetect 2.4 *** >NZ_MPFM01000121.1 Clostridioides difficile strain 7481-NonSp/ST59 LCH7481_contig000121, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 1482 29 100.0 37 ............................. AGAGTATTCACACATATTGTAACCTGTTCAGAATTAT 1416 29 100.0 37 ............................. CAACTTTTCAATAGTGACACTATAAACTTTGATAAGT 1350 29 100.0 36 ............................. TTGCTGATGATAGTGTGACTACTTCTATGACTACTG 1285 29 100.0 36 ............................. CCTAAAATTATAATTTTTATCTTAAATATATTATAT 1220 29 100.0 37 ............................. AGAAAGATACGATAAATAGTCGTTAACAACTCCAAAA 1154 29 100.0 38 ............................. TCATACAAAACAACAGTACCTTTCGTAAAATAACATCC 1087 29 100.0 37 ............................. ATCGATTCTATTCTTATCAGAAAGCGTTGAACGAGGA 1021 29 100.0 37 ............................. GTACGTTACAGCAGTAAACAAGCTAACTGGAACAAAC 955 29 100.0 37 ............................. TCTTAAAACAATCGAATAAATATAATAAGATGCAACA 889 29 100.0 36 ............................. TTATTAGTCAAATATAGTATTTTAAACAACTCCGAC 824 29 100.0 37 ............................. ATTATTATTCCATTACTTTTAGAGATTACTTTTGCTA 758 29 100.0 37 ............................. GTTATTGCTCCTGTCAGTATTGAATTGTTCAATTTAA 692 29 100.0 37 ............................. TAGTTATTGCAATGCTTACGAGGTTTTTTGTGTTGTC 626 29 100.0 37 ............................. TCTAAAAGGTCACATATATTTATTAAATCTGTTGCCG 560 29 96.6 37 .......................A..... ATGCATTTAAATGATATGTTTGGAGAACTTTGCTATG 494 29 100.0 36 ............................. TTACTTTAAAATATGTACCATAAAAAAATATATCAA 429 29 100.0 38 ............................. TGTTTTCAAACTTTCGTTTTGTATTTTCTCAACTTCTA 362 29 100.0 38 ............................. AGGGTTTCTGATAAAATCTTCAAACATGTAAAATATGT 295 29 93.1 37 ...............T.A........... CTTATACTTAGTTAGAACTATATATCGACACAAATAT 229 29 86.2 37 .C.............TA......A..... TGCAATTTTTATTCGTTGTCCAATCGCTTTGAAATTT 163 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 21 29 98.9 37 GTTTTATATTAACTAAGTGGTATGTAAAT # Left flank : CTATTATTATATATAACTGACATTTAAGTGACATTTAAGAAAAATATAATGCCTACTTACATAAAATGGAATGTTATTTAAAGAGAACTTTGATTATATTTTCAGAAGCTTTTTTATCCATATCGTTTAAAACAAGAAAATATCTATTCATAGTTATTTTTATATTAGTATGTCCTAATCTTTTAGAGATGATTTTTATATTAGTTCCAGCTAGAAGAAGAATTATTAGAATAGATAATATAGTAAGTATTTACAAATATGTAGGTGTTCTTAAATTGATAAATTATTCCATTTTAATTTTATAGTTTGAATTTTATGATATAATAAAAATATATAAATTTTGCAGTGAGCGATATTTTTGATAAAGTAGGGTTTAACAGTTGCAATGTAAGGGATTGAGGGTGTATGATAAATGTTATCAATTGCACTACTCATGGTTCACTGCAAATTTGAGAGAGTTGTATGTGTGTAAGTACTGAAAATACTTAGTTTATTTTGGG # Right flank : TTTGCAACAAGTATAGGTAAAATACCCCAATAATTTATACAGCATTTTATCCTTTAAAATATAATTATTTTTTATCATTTGTAGTAAATAATTACCAGATAACATTGACTTTAGTTTTAATGATTAAAATATAAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 10201-10626 **** Predicted by CRISPRDetect 2.4 *** >NZ_MPFM01000130.1 Clostridioides difficile strain 7481-NonSp/ST59 LCH7481_contig000130, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 10201 29 100.0 36 ............................. CTGTCTATTTTAATCTTGCAAGTTTTTCACTTATGA 10266 29 100.0 37 ............................. TCAATTTACCGTTTTTTTCAAATCTCACAACATCAGA 10332 29 100.0 37 ............................. CTATCGGCTTCTTGAAAAGCCTCATCTGCTCTATTTA 10398 29 100.0 37 ............................. TTCATTAAATCCCCAACCGAATTATCTTTCAGCATTT 10464 29 100.0 39 ............................. CATGCTGATAAGAATCTCTATGAACTTCGGAGGGAACCG 10532 29 100.0 37 ............................. TTGGGTATTTTGCTAAAAATAAAGCTATTAAATTAGA 10598 29 96.6 0 .C........................... | ========== ====== ====== ====== ============================= ======================================= ================== 7 29 99.5 37 GTTTTATATTAACTATATGGAATGTAAAT # Left flank : GGAGTTCATGTATCAAAAAATTATCCTCCCGACGCTAAGAAGGGAGGTGAATATACATGGATAATTTTTTACAAGGCATACTAGCAAGTCTATCTGCTAGCTTAATAGTTTATATAGCTAGCAAACTATTTAGAAAGCGTAAAAAACCACTCAAAGCGGCAACTAAGAGTGGTTGGGAATTTGATTTAAAAATCAGATTCCATAAAACTAAGTAATTTCTAAATTATGAACTCCACTCTACAGCAAAATAGATTGTAGTTCTTCTTGCTTTTATTATATCACAAATTGGTATAGATATTCAAAAATAATATTTTTATGATATAATAAAGTCATAGAAATTTTGCAGTGTTCGATTTTTTGAAGAAATTAAGGCTTAACAGTTGAAATATAAGGCATTGAGGACTTGTGATAAGTGTTATCAATTGCACTACTCATGGTTCACTGCAAATTTGAGAGATTTGTATATGTGTAGGCATTGGAAATACTCAATTTATTTTGGG # Right flank : TGTATCCAAAAAATTACAATAATCATACGAACTGCTAATATAAGCAGTCAATATATGTGTACATTTATCCATTTTATCTCTAAACATATAAATTATTATCCCCCTAAAAAACTTTCATAAAAACAAAAAGAACAATATCTCTTTGGCAACTGGCTAACATAACTCATAAGATATTTATATAAGTCTTAGTCCCTATAGCTTTGCGTCACTAGATTTCTCTAGTTTTGCCGATTTAGTTTTATTCTATAACTAAATAATACAATAGAATTAGTTATTATTCAACAAGATTGTTTGAAAATTGAATAAATTTATAGTTATGAACGTAATTTCACACTTAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 1756-147 **** Predicted by CRISPRDetect 2.4 *** >NZ_MPFM01000196.1 Clostridioides difficile strain 7481-NonSp/ST59 LCH7481_contig000196, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 1755 29 100.0 36 ............................. CAGATAGAAGTTGAAAGAGTGAGTGTGCCAGGCAGG 1690 29 100.0 38 ............................. GTATTACTCCCAATTATGAACATAGGATATAGTCTTTT 1623 29 100.0 38 ............................. ATTGCTCTAGCGATTATGGGTGTTTTTCTTGTTTGGAA 1556 29 100.0 36 ............................. ATCATAAGAACCAGGAACATATGGCAAACTATAAGG 1491 29 100.0 37 ............................. GTTACAAAAGAATTAAATATAAAAAATATAGAAGTTG 1425 29 100.0 35 ............................. TCAGAATATAATGAACTTGAAGTAAATAAGTTCAT 1361 29 100.0 36 ............................. AATAAAAGATGGCTGGGTTTTAATAATTCCTTAAGC 1296 29 100.0 38 ............................. TTGACCTACTTCATCCACTGCACCAGATTCTAATTCTA 1229 29 100.0 35 ............................. ATACTTGGTCAATACATTTCAAAAGTTGCAACAGA 1165 29 100.0 36 ............................. CTGGTTATTGTCTCATCACCATTATGCTTAGGTATG 1100 29 100.0 37 ............................. TTGTATCCTTGTATCCCCATTTTTGCAGCCAATTTTT 1034 29 100.0 37 ............................. GTTCCTGTACCGGGTTGATTACCTGTTCCGGCTCCTG 968 29 100.0 37 ............................. TTCGCTATTTCTTTAACAACAGGAACGTTAAATTTGT 902 29 100.0 36 ............................. TAGTTATTTTCAACATATTCTTCTATAACTTCATCA 837 29 100.0 37 ............................. TTCAGTATAGATTCTAATGTATACTATTCAACTAAAA 771 29 100.0 38 ............................. ATTCCTAGCACAAGCAATATGATTGGAATGTATTTATT 704 29 100.0 37 ............................. ATCAAATACAGTTCTTGGCATAGTTATCTCTAAACCA 638 29 100.0 37 ............................. GGTGTTAGCCCTAAACCATTTCTAGCACCCGCATACG 572 29 100.0 37 ............................. TTTAAAAGGTCAACTTAAAGGTAGTAATTTTTTAATA 506 29 100.0 38 ............................. ATATTATCATCATTTAGCAAAGAATTTGCGTATTTTTC 439 29 100.0 37 ............................. CTTATAACACTTCCTCTCTTAATTCTGCATTAAGCAG 373 29 100.0 36 ............................. TGGTTTGCAAGGTAGCTCTAAAGACACTTGTTTAAG 308 29 96.6 37 .......................A..... AGCAATTCTGATATTTTTATTCTAATCATTTGAAATC 242 29 100.0 38 ............................. CCATCTTTTGTTGCTTTACATAAATTTATATTACTTAC 175 29 82.8 0 ........C........CA....A...T. | ========== ====== ====== ====== ============================= ====================================== ================== 25 29 99.2 37 GTTTTATATTAACTATATGGAATGTAAAT # Left flank : GATAACCATAATAAAAATAGATATCTATTTTTAGATTAAAAATAATATATCATAAATAAAATAATAAGAGGTAGATACAGTTTTAAGGGAATACAAAAGTTTTTAATTAAACTATGCTTGTTCAGATAGATATTTATTTAAGAAAAAAGACCATTAAAAGCAATATACAAAAATGATATATTAGATTGATTAAACAAGCATAAATATTATGTAAAAAACTTTAAGTTATAGAATTTAAATCCAATGTAGATAGATTACGTTTTTTTGCTTTTATTATGGTATAAATTGGTATCAATATTCAAAAGTAATATATTTATGATATAATAAAATTATAGAAATTTTGCAGTGAGCGATATTTGTGAAAAAATTTGGCGTAACAGTTGAAATATAAGGCGTTGAGAGTGCATGATAAGCGTTATCAATTGCACTATTGCTCGTTCACTGCAAATTTAGGAGAGTTGTATACGTGTAAGTGTTGAAAATACTAAGTTTATTTTGGT # Right flank : TTTCTTTTAATGTGTTATCTTATGATTATCTAGTTATATTAGCATACAAAAATATAATAAAATTACACTATATTATAAAAACCAAAAGGTAGTATAGAAATCCTATTACCTTTTTATTATTAATTTTATCAGTGTTTTATTATAAAT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 9215-8336 **** Predicted by CRISPRDetect 2.4 *** >NZ_MPFM01000017.1 Clostridioides difficile strain 7481-NonSp/ST59 LCH7481_contig000017, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ======================================= ================== 9214 27 100.0 38 ........................... TTCAACTCTGCTGGTGCTGTTAATCTTCTCTTAGATTG 9149 27 100.0 39 ........................... TTGTGGTGGTATTTTTAAGTCCTAAGCATTTTCGCTTGG 9083 27 100.0 39 ........................... TAAAAAATCGTTAAGATTATTTTCTTCTTGACCAAATTG 9017 27 100.0 36 ........................... TTCATAATAATACTCTTTGACTGCATACAAAACATG 8954 27 100.0 38 ........................... TCCAGTCATGAAACCAAAAGAATTTAGACCAGATTCAG 8889 27 100.0 39 ........................... TGTAGATTCATTTAAAAAAGGGTATGAAGTAGGTCAAAG 8823 27 100.0 39 ........................... TTTCGCAACTTATGATGGTGAAATGATTACATTAACAGG 8757 27 85.2 39 .....T........AG...T....... TATATCTACATCTAAGTAATCCGCAATAGATTGAATTAA 8691 27 85.2 39 .....T........AG...T....... TGCTGTATCCTTTGCCCCTTTTGCTGCGTCACTCAAGGT 8625 27 85.2 39 .....T......A..G...T....... GTCGTTTATCATTGCTAGCCTCGCATTCGTACTGGTCAA 8559 27 85.2 39 .....T........AG...T....... GATTCGCGATACTATTTGTGCAGTATCTAAGTAGGATGG 8493 27 85.2 38 .....T........AG...T....... TCATTCACTACAAAATATATATTCTAATGTATCATTCG 8428 27 92.6 39 .....T.............T....... CAATATATATAGCAAATCTGTTATATTAACTATGAAGTG 8362 27 81.5 0 .....T.........G....C.TA... | ========== ====== ====== ====== =========================== ======================================= ================== 14 27 92.9 39 TTTTAGATTAACTATATGGAATGTAAA # Left flank : GAGTGGAGTTCATACAAAAGATTATCCTCCCAACGTATAGAAGGGAGGTGAATATGTATGGATAATTTTTTGATTGGTGTATTAGCTAGTTTAACAGCTAGTCTAATCGGTTACATAGTTTGTCTATGTATCAAAAAAGTAAAAAGCCACTCTGTGCAAGAGAGTGACTTAGATGTTGAGCTTAAATTTTCATTTAAGTTCAAAAAAAATAAGCATTAAATTGTTTAGAACTTCACTCTACTTCCAAATAGATTGTAGTTCTTCTTGTTTTTATTATACCACAAATTGGTACAGATATTCAAAAATAATATTTTTATGATATAATAAAAATGTAGAGATTTTGCAGTGAGCGATATTTGTGATAAATTGAAGTTTAACAGTTGCAATATAAGGCGTTGAGGGTGTGTGATAAATGTTATCAATTGTACTACTCATGGTTCACTGCAAATTTGAGAGAGATGCGTATGTGTAGGTATTGGAAATGCCAAGTTTATTTTGGG # Right flank : TTAAAAATAATTAAAAAACACTTACTTAGGTAGGTGTTTTTTTAATTGAAAGTAGGTGATTATAATGTAAAAATTTTACTGATATAGTATAATAATCTTATAAAATTGCGTAGGGGGTAATATTATGGGATTATTCGGAAGTAAAGATAATTGTTGTATTTGTGGAGAAAAAGGAAAACAAAAAATAGCTGATGGATGGTTGTGTAAAGAGTGTTTTAAGAAATATGCAGTTGCCACCTTTACTCCAGGAAATACTTTATATCGTGGGTTACCAACTAAATTAGAGGTAGAGAAGGCTATTGAATCAAAAGATGATAAAGAAAAAGAGCTTAAAAATTTTAATCCTACAAAAAAAATATTAAAATTTATGGAATTTGATGATAATAATAAGAAATTTATTGTTTTAAATGGGTTTAATAGAGAAAAAGTGAATTTAAGTGTTTATAATTACAGTGATGTTATAGAATATGAACTTCTAGAAAATGGCGAAACTGTGACTA # Questionable array : NO Score: 5.76 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTTAGATTAACTATATGGAATGTAAA # Alternate repeat : TTTTATATTAACTAAGTGGTATGTAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:81.48%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 19369-19146 **** Predicted by CRISPRDetect 2.4 *** >NZ_MPFM01000044.1 Clostridioides difficile strain 7481-NonSp/ST59 LCH7481_contig000044, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ======================================== ================== 19368 26 100.0 39 .......................... GGTTTGATGGAAATAAAATAATAATAGAAAAAATAGAGG 19303 26 100.0 40 .......................... GGTACATAGCAAAAATAATTATAAGTTGGAGATTTTGTAT 19237 26 96.2 40 ....................A..... AATATTGATATAGTAGATATAATAGAAGTTTTATTATTAG 19171 26 76.9 0 ......A.........TC..A...TT | ========== ====== ====== ====== ========================== ======================================== ================== 4 26 93.3 40 GTTTAAGATTAACTAAGTGGGTTTCA # Left flank : TTTGAAGAGAATTTTATAAGTTGTGATAAAGAAATTAAGAATATTTATGGTATAAATAAAGAAATTTTTGATGGATTGGATTTAATTTTTAATTTTGAACCTTACAAAAATATTGTTGATAGTAAGAAGGAAGCAGCTAAAATTTTTAGAGATGTTGATGTTAGTTACAAAATTATTCTGGAAGAAGATTTTTATAAGGAAGATAGGGAGTTACAACAAGATTCGATTCAAGTATCAGGGTTTATATTTAATAGATTATATTATTATGGATTAATAAGCAAAGTAGAAGGATACATGGTACTAAAATCTAGTAGTAAGTTTGAGTATAATAGTACTGTAGGCTTAATTTTGAAGTGAGCATATGTTTAAATATAATATACCTTTAGACATTGAAAATACAAAAAGTACTACTGTAAGTCCACTGTAAAAACTATTTTTTAAAAGGAAAAATAAGTTGTGAGATAGAGTGTTTACAAGTGTATATAGATAATAAATTTGAG # Right flank : AAATATTCTGACTATTATATAAGGATATTATTAGCTTGAATTTAAAACCAATAATATAAAACAACAAAATATTATATTTATGATATAATAAAAGTTATGGAAAAACAGGAATATTACTATAGAGAAGAGAGGTAAACTTATGAATAATTGGATAGAAGTAACTATAAAAACAACAACAGAAGCAGTTGAACCTATAACGAATATACTATATGAACAAGGAGCTGGAGGAGCTGTAATAGAAGACCCAAAAGACTTTTTATTCCAAAAGAAAAATGAACTAGACTGGGATTATGTTGAAGAAGAAGTATTTAAAAAGAATGAAGAAGATGATGTTCTTATAAAAACTTATGTTTCTGAAGAAAAAAATGTGATGGAATTTGTCGAAATAATAAAGCAAAAAGTTTTAGGGTTAAAAGATTTTGGTATAGATATAGGTGAAGGAAGTGTATCATTGGACCAAGTAAATGAAGCTGATTGGGCAAATGCATGGAAAGCATACT # Questionable array : NO Score: 2.52 # Score Detail : 1:0, 2:0, 3:0, 4:0.66, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAGATTAACTAAGTGGGTTTCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.23%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [83.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 6345-5590 **** Predicted by CRISPRDetect 2.4 *** >NZ_MPFM01000049.1 Clostridioides difficile strain 7481-NonSp/ST59 LCH7481_contig000049, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 6344 29 100.0 36 ............................. AATTTTTAGAATATTTATACATATATGATAACAAAA 6279 29 100.0 37 ............................. ACTATCTTTAGTAGTAATATTTTATGTAGCTTTACTA 6213 29 100.0 36 ............................. GATGATTGTTACTTCACAAAAGGCATAGTCGTAATT 6148 29 100.0 38 ............................. CAAAAAACCACTTTTTTATTATATGACTTTGCCAAATT 6081 29 100.0 38 ............................. TCCTATAATATTATTATATCATGACGCTACGTCAAAAG 6014 29 100.0 37 ............................. GAATATTAGCTATATTATCTTTACCTACTTGCAAGTC 5948 29 100.0 37 ............................. TTTATTTTTGTAATATAATCATTAAGTTGGAGCTCTT 5882 29 100.0 38 ............................. TAAATTACCAATATGTTAAATTTAATATTATATTGACG 5815 29 100.0 37 ............................. CGAAAAAATTCTTCTATTTATAAATTATATAATAAAG 5749 29 100.0 36 ............................. AAGTCACACCGCCCTCCACACGACACTATAATAATA 5684 29 93.1 37 .............C.........A..... AGTATAATGTTGAAAAGTTAGAGAGTACAATCAAGAA 5618 29 69.0 0 A.....C.........AAT....AG..TA | ========== ====== ====== ====== ============================= ====================================== ================== 12 29 96.8 37 GTTTTATATTAACTAAGTGGTATGTAAAT # Left flank : TACAATTTATAGAGTGGAGTTCATACAAAAGATTATCCTCCCAATGTATAGAAGGGAGGTGAGTATGTATGGATAATTTTTTACAAGGTGTACTAGCAAGTTTAGTTGCCAGTTTAATAGTTTACTTAAATAGTAAATTATTTAAAAAAGTAAAAAGCCACTCTGGCAGGAGCGACTTTAGTTTTGAACTAAAAATCAAGTTCAAAAAGAATAAACATTAGTATTTGAACTTCACTCTACGTCTAAATAGATTGTAGTTCTTCTTGTTTTTATTATACCACAAATTGGTACAGATATTCAAAAATAATATATTTATGATATAATAAAAATGTAAATAGTCTTGCAGTGAGCGATATTTGTTACAAAGTAGGGCTTAACGCTTGAAATATAAGGTGTTGAGGGCATGTGATAAGCTTTATCATTTGCACTACTCATGGTTCACTGCAAATTTAAGAGAGTTGCACATGTGTAAGCATTGAAAATGCCCAGTTTATTTTGGG # Right flank : AAACATGTATTTATACTTAAATTCTGTACCTATATAAAAAAGTGAACTCTGTCAACAAAGCACTTTTTTATATAGATAAATTATCATTTTGTTTTAAGATAGAAGATACTAATGATAACTGTTTATCATTAGTATCTGTATGTACATAAAAGTTTAATTTTTTATATAAATTTGCTCTTTAGAAAAATGAGCAGTATCAATAAATATATTGTTTAAATTTTTTCTAGGAACTAGTTGACTAGCTATAAGATTAGCTTCAACTCTTTGATTGTTAGACTATGAAATTAAATTTAAAGGTTCATTCTTGGTCGTATAAATAGCTTTATTATTCGTATGTACTATAACAATTTTTGCCATCTGCTTTTGATAGATAAAGAGCTTTATCAGCTTTAGAAAATAAATCTTTATATAATTTAGTTGAATCATCAGTGAAGGCAATACCAATACTTAATGTTATTTTATGATTGTCCTTTACTTTTATTTTACTCGCATCATTTAAA # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //