Array 1 127-389 **** Predicted by CRISPRDetect 2.4 *** >NZ_QCYL01000023.1 Chitinophaga costaii strain A37T2 Scaffold23_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ============================================ ================== 127 33 100.0 43 ................................. ATTGATTTGCCGGGAACACCGCGCAACAAGTTGTTTAAAAGCG 203 33 100.0 44 ................................. CGGGCAGACAAGCTTTTACGCAGGGTTAAAGTTGTTTAAAAGCG 280 33 100.0 44 ................................. TAGAATGTTTAGTCTTACGAAAAACAGCAGGTGGTTTAAAAGCA 357 33 93.9 0 .............................TT.. | ========== ====== ====== ====== ================================= ============================================ ================== 4 33 98.5 44 AAACTACATAATAAAATGAAAGCAAATCACAAC # Left flank : CGGCGGATGCTTCCCAGCAGTGCCGCTTCCGCTTCAGATCAAATTAAATTTAAAGCCCTTTCTTACATTTGGAAAATATATCTTTAACCTAAGAGACTTCACTGTCCGGCAAAATCGACCCACCTCA # Right flank : CTCAATTCTCTTCAGTTTTCAAATTTCCCTTTGAATTATCGGGAGATAGATTTGCGACAACATGTAAATATCCAACAATTGGGGAAAAGAAAAAGGCTAATAAAAAGGCAGTCCAAAAGCTTATATTTTCCCTTTGAGCGATAGCACCACATTGAAAACAACCAATCAAATAAATCAAAAAGGAACCGCATACAAGAGAATAACAGCGTTTTCCATCATTTATAGTAGGGGTACATTTTTAATTAAGCAGGTAAAAATAGCGATACTTCAAGCTACTAAATATTTATAAACAAATCAACACCTTAGTCCCCCCCACATCACCCAAAACCTTCAATTTTCGTACCTTCCCACTCCATGCAATCACCCACCTTCCATCGCACGCGCCTCGCGCCCACACCGAGTGGGTATCTTCATATCGGCAATGCGCTTTCCTTTGCGCTCACGGCCAGTCTTGCCCGGTATTACGGCGCGCACACACTCCTGCGCATAGACGATATGGA # Questionable array : NO Score: 2.79 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AAACTACATAATAAAATGAAAGCAAATCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 1161-4900 **** Predicted by CRISPRDetect 2.4 *** >NZ_QCYL01000031.1 Chitinophaga costaii strain A37T2 Scaffold31_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== =============================== ================== 1161 47 100.0 30 ............................................... CGAAAAGAAAATAGCGAAACATAACACTTA 1238 47 100.0 30 ............................................... AAAGGAACTGCAGGAGCGAACCGGTATTAC 1315 47 100.0 30 ............................................... TGTTCATCAACGGGTTTACCCTGGGATCAT 1392 47 100.0 30 ............................................... CATTTGCGCCCATATATCCAATAAGTCGCG 1469 47 100.0 30 ............................................... TGGTACCTATGAATTGAACCAGCTCATTAT 1546 47 97.9 30 ..................C............................ ACTTAAGATTATAAGTACCATCGCCCTCGC 1623 47 100.0 30 ............................................... AGCTGAGTCTGTGATCTCTGAACCGATTGT 1700 47 100.0 30 ............................................... CAGCATCGTCTTTTTGTTGAAGCGTAAGGG 1777 47 100.0 30 ............................................... AAAAGCCTAGAAGATCAGGCGAAGTTCTTT 1854 47 100.0 30 ............................................... CCTTAATAACGTAGATAGCCGTCCTGCGGA 1931 47 100.0 31 ............................................... TCAGACCTGGAAGGCTTAAAAGACGAAGAGG 2009 47 100.0 31 ............................................... TAATGAAGGTAGCTACTAACTCTATCATTGA 2087 47 100.0 30 ............................................... AGCTGGTTAAGGAGGACCCAGCGGCCTATT 2164 47 100.0 30 ............................................... TGTTGGGACTTCCAAATAGCAGGAAATGAC 2241 47 100.0 30 ............................................... TTGATAATCCGCACATCCCCAACGCGGCGG 2318 47 100.0 30 ............................................... AAATACTACTGGTGAAACCGACGGCCTACC 2395 47 97.9 30 ...................G........................... GCATAGCCGTTGACCTGGACGCAGCCGGTG 2472 47 100.0 30 ............................................... CAATAGCTACTTATCAAGATTACACTTTGC 2549 47 100.0 30 ............................................... AGGAACTATCTATTCTTGAAATCCGGAAAA 2626 47 100.0 30 ............................................... GGAGACGTTTCAGATTGCTACCCGGCGCGC 2703 47 100.0 31 ............................................... CAGTAACAGTGCGAACAGCAAACGACACACT 2781 47 100.0 30 ............................................... AGTAAAAGATTATCTGTCCAGCTTCACTAC 2858 47 100.0 29 ............................................... ACCGGAGAGAAGGTCGATGACGTATTAAC 2934 47 100.0 30 ............................................... AAATATAACGTCATCGTCAAATGCGTCCTT 3011 47 100.0 30 ............................................... CGTTACATTGCCGGAAATCCCCGAAATATG 3088 47 100.0 29 ............................................... ACCGCGACAAAAACACGGAGGTGATGAAT 3164 47 100.0 30 ............................................... GTAGTAAGAGGTACAGAGGATGTTTTGATA 3241 47 100.0 29 ............................................... TTGCATGTAGAAAGTTTCATTTAATTCAT 3317 47 100.0 30 ............................................... TGGTTGTGAGTCATATTTAGGTACGGGAAA 3394 47 100.0 30 ............................................... AATTCTCCGTCTTTTAGTACCGAGTCCTCG 3471 47 100.0 30 ............................................... CGTCCCTAAAAAATACATTGCGTACATTAC 3548 47 97.9 30 ....................T.......................... TTATTCTTTAATCATAAAAAACAACCACAT 3625 47 100.0 30 ............................................... ATTTCTGCACCGTTAAAAAATTTCGTTTCG 3702 47 100.0 30 ............................................... AGCTATGCCTCGTTATTATAAGGACAAGAT 3779 47 100.0 29 ............................................... CTACGCAAATGCGTAACTACCAAATTTAT 3855 47 100.0 30 ............................................... CCAGCACCCCTATGATCGCTATCAACGCGA 3932 47 100.0 30 ............................................... TATGCCGGCGACGGCGCAAAACCATTGGTT 4009 47 100.0 30 ............................................... GGAAATAGACATGGCCGACATGCGCGTACG 4086 47 100.0 29 ............................................... CTACGCAAATGCGTAACTACCAAATTTAT 4162 47 100.0 30 ............................................... CCAGCACCCCTATGATCGCTATCAACGCGA 4239 47 100.0 30 ............................................... TATGCCGGCGACGGCGCAAAACCATTGGTT 4316 47 100.0 30 ............................................... GCAGCTACTACTACTTCCCTTCCAAGTCGT 4393 47 100.0 30 ............................................... ATCGCCACACAAAGCGTGGTAATCATTCTC 4470 47 100.0 30 ............................................... GCAATGCCTCGTTATTATAAGGACAAGATT 4547 47 100.0 30 ............................................... CCTAACCCGTCTAGGTATTCAGGGGTACGA 4624 47 100.0 29 ............................................... ATTGAGTCGTATATCCTGCGTGCTTCCTT 4700 47 100.0 30 ............................................... CTTAAGGTAGGCCTTGTACATGTTTTGCCG 4777 47 100.0 30 ............................................... TATCAGGAGGGCGGCGTTTTTCACATTAAG 4854 47 97.9 0 ...........A................................... | ========== ====== ====== ====== =============================================== =============================== ================== 49 47 99.8 30 GTTGTTTAAAAGCGAAACTACATAATAAAATGAAAGCAAATCACAAC # Left flank : CTAGTCTTGCAAAATGTTATGAAGGAAAATCACGGAAAATCCTCTATCCGGTGCTTGAATAACAAATTGAATACTAATGCATTCAAGATTAAATGCATATCGCGTTATGTGGGTTCTCGTATTTTTCGATCTTCCGGTAGACACTCGAAAAGATCGTAAAAACTATGCAACATTTAGAAAGAAAATTCTACAGGACGGCTTTAGCATGTTCCAATTTAGTATGTACATCCGTCACTGTAGCAGCAAAGAAAATGCGGATGTACATATTAAAAGGGTAAAATCCATTTTGCCATTCCAAGGACATGTGGGAATTATGTGCGTAACAGACAAGCAATTTGGTATGATGGAAATATTCAGAGGACATTTAGAGGTGCGCGCACCGGATACCGTGCAACAGTTAGAACTATTCTAATAGGAAATAAAAAACGGGCGGATCGCCCGTTTTTTATTTCCTAAAAACAACCTTAAATCCTTTACTGTATTGAACTTTGAAGGATTGT # Right flank : CTACTGCCTACTTTATAGTAGGTAGTGCTTGTTGTTTAAAAGCGAAACTGAAATGGTCCAATAAATCCGGACAGTAAAGTTGCTTAAATTTGCAAAGCAATGACTGGAAGAAACACAAAAAAGACCCGTAGGAAATACGACGCAGGTTTCAAGGAAGAAGTCCTGAAAATGGTGG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTTAAAAGCGAAACTACATAATAAAATGAAAGCAAATCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.34%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0.37 Confidence: LOW] # Array family : NA //