Array 1 9544-12984 **** Predicted by CRISPRDetect 2.4 *** >NZ_MLCF01000026.1 Streptomyces gilvigriseus strain MUSC 26 26, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 9544 29 86.7 32 ......................-.CA..G. GATTGCTTGGTTCATGAACCTATGAGTGATAC 9605 29 86.7 32 ......................-.CA..G. GCCGCATAGCGCAACAAAAAAGAACCCCCGTA 9666 29 86.7 32 ......................-.CA..G. TCGCCGTCTTCCTCCACGAGCTGCGGCTGGTG 9727 29 86.7 32 ......................-.CA..G. TCGGGGACGATCGGGGCGCCCGGCCAGCACGG 9788 29 86.7 32 ......................-.CA..G. CCAGCACCATCGCGAGCGAGTTGGCGTAGCAG 9849 29 86.7 32 ......................-.CA..G. AGCCACCGACTGCCGTCTGGCCAGCGTTCCAG 9910 29 86.7 32 ......................-.CA..G. TCCACCGCGCCGTCCGGATGGCGTCCACGGCG 9971 29 86.7 32 ......................-.CA..G. TCAGTGAGGGCGGCTACTATCCCGCCCTGAAG 10032 29 86.7 30 ......................-.CA..G. GCTTCCAGGACCAGCGGGCGCGGTAGCAGG 10091 30 96.7 31 .............................A CCGATGGCCTCGCATTCACCAAGCCCGTCTT 10152 30 96.7 31 .............................T ACACGGCGTTCGCCAACCAGTTCGCGGCGGC 10213 30 96.7 31 .............................A ACCGGATGGTCGCGGAGAAGCGCGCCATCTC 10274 30 96.7 31 .............................A AAGGAGGCTCCTGATGTCGGGAGTGATGAAG 10335 30 96.7 31 .............................T AGTGGTGGAATGTGGGGGGTTGGGGGGGCCG 10396 30 96.7 31 .............................T CCCGCTTCTTCCGGCGGCCGGAGATCATCCA 10457 30 96.7 31 .............................T ACGTCACCGCGCAGACCGTGATCAAGCCGCC 10518 30 96.7 31 .............................G TCCGGCCGCCGTTGATCAGTCGGGCCACCGA 10579 30 96.7 31 .............................G ACTCGCCCGTCCGCGTGCAGCTGCTCGCGAT 10640 30 100.0 31 .............................. TCGGCGGCGCCGAGCCCACGCTGCGCGTGCG 10701 30 96.7 31 .............................G CGACGACCGGGCTCGGAAGCAAGGACGCCAC 10762 30 100.0 31 .............................. AGACCGTGTACAGCGTCACCCTCACCCTGAA 10823 30 96.7 31 .............................T CAACGGCGGCCCACCGGTCGCGACTGGGGAA 10884 30 96.7 31 .............................G CGCCCCGGACCCAACACCGCTCGGTCCGCAT 10945 30 100.0 30 .............................. CCCGGTGAAGCCGGCACCATGAACACGTAG 11005 30 96.7 31 .............................G CGCCGCTTCCCACCGGAGCGTGGCGGGCGGC 11066 30 100.0 31 .............................. TGGCCGTAGCCACGAATCGACCAGGTCTCGC 11127 30 96.7 31 .............................G CCTGGCCCGTGTGGTCGTACTGCTGGCGGCG 11188 30 96.7 31 .............................A GAATCCGGTGTCCGGCTCAGACGCGGTCGCC 11249 30 93.3 31 ............................TA GGATCCCGGATATCCGGACACGTCAGTCCCG 11310 30 100.0 31 .............................. GCTACGGCCGCAGTCCTAGCAATGATTCGCA 11371 30 96.7 31 .............................G AACTTCATTTCCCGTACCTCCTAGGTTGTCC 11432 30 96.7 31 .............................A GGTGTTGACCATGGTGCGTCCGCACCGCCGG 11493 30 100.0 31 .............................. GCCCCCTGCAAAGAAGCAGGTGGATGGAGAA 11554 30 96.7 31 .............................G CGACGCTCGGCGGGGTCAAGGCGGCGCTGGC 11615 30 96.7 31 .............................G AGCACGCTTCGGTGCACGTCCGCAACGCACG 11676 30 100.0 31 .............................. CCACCCTCTCTGATGAGCAGGTGCAGCGGTA 11737 30 100.0 31 .............................. GGGCGCGGCCGCCCTCCGCAATGGCGTCCCA 11798 30 96.7 31 .............................G GGGCGCACGGCGAGGGCCACCAGGACCGTGA 11859 30 96.7 31 .............................G GCTTTGGCCGAGTAGGTCAGCAGCCCGTCAC 11920 30 100.0 31 .............................. AGCAGCAGGGGACCACGGACCCCACGGCGCA 11981 30 100.0 31 .............................. GGGTGACCGCCCTCGTACGAAATCCCCATGG 12042 30 96.7 31 .............................T GGGGAATGCTTGCTAACGACACCGTCGGAGA 12103 29 96.7 31 ........-..................... GCTGCGCCGACTCCAGGGCGAACGCCACCGC 12163 30 96.7 31 .................A............ GCCCGCCCCTCGCATCCCGCAGGGGCGGGCC 12224 30 96.7 31 .............................A GGAACGTCCCGGCGGTGCTCGCCGTCCACAC 12285 30 96.7 31 .............................G CGGCGAGGTCGAACCCCCAGCCGAGTGCGCT 12346 30 100.0 31 .............................. ACCGCGAGGAGCTCTACGCGAACGGGCGCCG 12407 30 100.0 31 .............................. GGTTGGCGTTGGGGCTGACAGACTCGATGGC 12468 30 100.0 31 .............................. CGCGCTCCAGCCGCCGGCCCTCCCCCGCCAA 12529 30 100.0 31 .............................. TGTCCGACTACGTGACCCGCGACGGCGTCAA 12590 30 96.7 31 .............................G TCTCCAGGGCGATCTCGTGGGCGCTCGGCAG 12651 30 96.7 31 .............................T GCATCGGCACCCGCAGCACGAAGGAGAAGCT 12712 30 100.0 31 .............................. AGCCCCGCTACAACCCGCGCCGCGTCTACGT 12773 30 96.7 31 .............................T GCGAGCCAGCAACTCTCGCAGTACAGCTCAT 12834 30 96.7 30 .............................G CTTTAAGCGGCGCGCGCGGGCGGCCTTGCG 12894 30 96.7 31 .............................T GCACGTTCCCGAGATCCCGGGCGGCTTCGAC 12955 30 93.3 0 .................A...........T | ========== ====== ====== ====== ============================== ================================ ================== 57 30 95.9 31 GTGCTCCCCGCGGACGCGGGGATGGTCCCC # Left flank : ACCCTTCGGACGGACCGGGACGAGAACGTGAGCGCCGGCCGCAACTATGCGGAGGGGGAGGTCATCTGGTGACGGTCATCGTGCTCACCAACTGCCCGGCCGGCCTGCGCGGTTATCTGACACGTTGGCTTCTGGAGATCTCGGCGGGCGTCTTCATCGGCAATCCGTCGGCACGGGTCCGAGATGCCTTGTGGGAGGAGGTTCGGCAGTACACGGGGAAGGGCCGAGCGTTGCTCGTTCACACGGCCGACACCGAACAGGGCTTCACCTTCCGCACCCACGAGCACGCCTGGCACCCCGTCGACTACGACGGACTCACTCTCCTTCGCCGCCCGGCCGCGGGCGCGTCGAAGAAGCCGCCACGGGGTTGGAGCACTGCGTCGAAGCGGCGCCGTTTTGGGAAGAGATAGACGTTATAGACCCATAAGGCTTGTATGCCTGATTCTGATGAAGTGCTAAAAACCGCGCCTTGGGGTCTATGTACCCGCAGGTCGCGGAGT # Right flank : TGCCCGGCTACATTCAGCGGCTAGCTAGTTCTGGAAGAGCACTTCCGGATTGTTCGGCGAGGGCCCGTCCAGCAGCGGACGGTGGATTCCCTTCAGCGTCTGGTCGAAGAACGCCGTCACGTACTCGCGGGTGATCACCAGCCCGCGTTCCGGGGCGAGGGGCGGGGTCGGGAACCCGGCCTGCTGCTGGAGCAGGTCCAGGTCGCTGAAGCTGAAGTGGTCGGCGCCGGTGACCGTCAGCCATCTCTTGTAGCCGCCGAGGGCGGTCCAGGACTGCTGCCAGGTGGTGTCGTCGCCGCCGACCGGGTGGTCGACGGCCGCACCCAGCATGAGGAACGGCCGGTTGATCTGACCGGGCATCAGGGCAGGGTGGAAGGCGCCGTCCATGTTCACTCCGGCCCGTACCCGCCGGTCGGCGACCATAGTGGTGGCGGCCGCCGCTCCGCCGAGGGAGTGTCCGGCCATGCCGATCTCGTGCTTGTCGATGAGGTGCGCCAGGG # Questionable array : NO Score: 5.39 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.33, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGGACGCGGGGATGGTCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 24272-23999 **** Predicted by CRISPRDetect 2.4 *** >NZ_MLCF01000115.1 Streptomyces gilvigriseus strain MUSC 26 115, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 24271 30 100.0 31 .............................. CTCCCGGCCCCGTGCCGGCCAGGAGATCGCC 24210 30 100.0 31 .............................. GCGAGCAGCGACCATGCCCCGGTGAAGATCC 24149 30 100.0 31 .............................. ACCTGGACGAGAACGGGCAGGCCACCGTCAC 24088 30 100.0 31 .............................. CGAACAGCGGAGTTGCGCGGGTCTAGGTCAG 24027 29 83.3 0 ...............C.C......-.TT.. | ========== ====== ====== ====== ============================== =============================== ================== 5 30 96.7 31 CGACGGACCCCCGCGTGAGCGGGGAGGACG # Left flank : CTCGCTGGCCCGCCAGACACGCTCGGCCAAGGACCTGGGCAGCCCGCGCAGCCGCTGGGTGGAGGAGCGCGAGCCGGAGATCCGCCGGCTGCTGCGCTCGGCGGGCCTGACGATGGTGGAGCGCTTCGACGAGACCGCCTACCGCGCCACCGAGCCGGACGCGGTCTTCGAGTTCGCCCTCGCGACCACCCTGGACGGCGTCGCCGCCCTGCTGGGCGGGGCGTGATGGCGAGAGTGATGGCAAGACGGCGCGAAAAAGGCCCATGCTCTGCGTCTCCGCAGGTCATGGGCCTGATCTCAGTGGGGTGAGTGACGGGACTTGAACCCGCGACATCCTGGACCACAACCAGGTTGATGTACTGAACTGACGTTCGATTACGGCATCATGCCAGCTCAGACCCTTGGTCTCCGTTCGTTTCAACGGGCACCGAAGGGGGTGTTCAGCAAGATCGTCTCCCCGTTCGCTCCCAAGTGCCCCCGCGCATGCCAGGAGGATAGAA # Right flank : TCGACGGGCAGCGGCAAGACGTACTTGATGCAACAGTCGTCCCCGCTCGCGCGGGGGTTCGTCGGAGAGTTGACCTCCTCATGAGCAATCCTAGGGGTCGTCCCCGCTCGCGCGGGGGTTCGTCGACGAGGGCGTAGCCGGTGCTGCGGCGCCGGCAGTCGTCCCCGCTCGCGCGGGGCTGACGGCGTCTTAGTGCACGGCCGTGCGCTGCATTGGGCACACGGTTCGTTTCGGAGATGCAGCGCCGAAAGCCGTGGTGCTTCGCCATTTTGGTTTGACGGGCGGGGCCAGCTTCGGGCCGTCACCTGTCTACCTATGCGGTGTCATCTTGATGATCCGGTCCAGGATCGGGACCGCACACAGGCAGGTAGCGACGGAGGCCGGCCCGGTCGGCGGCACCGTCAGGAGCGCGAAGCCGAGGCCCGCGGTGTCGACGTAGGTCCAGGTGCCGCGGCGGCCGGCGAGAATTTGGGCGGCAGCGTCTCGGTTGGTGAAGGCCA # Questionable array : NO Score: 2.90 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGACGGACCCCCGCGTGAGCGGGGAGGACG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-13.10,-13.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 1 13320-6861 **** Predicted by CRISPRDetect 2.4 *** >NZ_MLCF01000005.1 Streptomyces gilvigriseus strain MUSC 26 5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 13319 30 96.7 31 .............................T CCTGGGGCACTTCGTGGGGCGCAAATGGTTC 13258 30 96.7 31 .............................C TCACTAATGGTCTTGCATTCTGTACAGGGGA 13197 30 96.7 31 .............................A GCGTCGTCCCCCCCAGCGTGTAGGGACTGTT 13136 30 96.7 31 .............................C AGGAGACCCCCAACTCCCCGATCGTGGTGGA 13075 30 96.7 31 .............................A TGCCCGAAATGCGAGGACGTTGACGGCCGCC 13014 30 96.7 31 .............................A CCTGTCAGGTGGTGAGTCCCTGGCGACAGAC 12953 30 96.7 31 .............................C TCTCCTCGCATGCGCTGGAGGAGTCCAAGAC 12892 30 96.7 31 .............................T GGCCAAGGCCCTGGACTACCTCCGGGAGGGC 12831 30 96.7 31 .............................A CCACTTCATCACTCTTCCCAGCTCAGAGGGC 12770 30 100.0 31 .............................. GCTGGTCCTGGTATTGGCTCACGTGGCTCGC 12709 30 96.7 38 .............................T CCGAAGCCAGCGGTGTACCGGCGTCCCCCGGACTGCAA 12641 30 96.7 31 .............................A GGGCCGGGGCCTCCGTCATGCACTGCTTGCT 12580 30 96.7 31 .............................A TCCGTCGGCCCAGCCCGGACGACATCAACGC 12519 30 96.7 31 .............................A CCCGGCGAGCCCCAGCAGCAATTACGGATTC 12458 30 100.0 31 .............................. TCAGTATCCATGGGCGAATCGGAGTACTGAT 12397 30 100.0 31 .............................. GTTATGGCGAAGAGTTAGTGATCCTGGGAGG 12336 30 93.3 31 ............................AC CTCACCGCCACCCGGCGCCGCCTCCAAGCCC 12275 30 96.7 31 .............................C GCCGCGCCCCCACCGCGTGACCTCATGCCAG 12214 30 100.0 31 .............................. AGGCGGCTCGGCGACAGGCGCAGGAGCGGGA 12153 30 96.7 31 .............................C GGCGCATCACGGCCTTCATCGTCGCCCGCAG 12092 30 96.7 31 .............................T ACGTCGGCGGCAGCTCGGGGTGGACCATCAA 12031 30 96.7 31 .............................T CCTGCTGAAGGAGCACCGCATGTCCCACTCC 11970 30 96.7 31 .............................A TGGCAGTCGTCGCCGTCACCGTCATCGGCAT 11909 30 96.7 38 ............................T. GCCTCCTGCACCAATCGGACCTGGTCCGACGTCAGCGG 11841 30 96.7 31 .............................A CGGACGGGCTGGCGTTCACCCGGCCGGTCTT 11780 30 96.7 31 .............................A CGCGGGCGTTCCTCCCGGACCAGGAGCCGAT 11719 30 96.7 31 .............................C TCTTGAAGGCGTCGGGCACCTCGGGGTCGGC 11658 30 100.0 31 .............................. GCCCATGAAGTGGGCCCCGACGGTCTGCCTG 11597 30 96.7 31 .............................T CGACGTGGTCGCGGCCCTTGTCGAGGACGAC 11536 30 96.7 31 .............................C ACGCCTGGGCGTTGACGAAGGCACGGGCGAA 11475 30 93.3 31 ............................TC GACGCCCTCACCGACGGCTGGGAGGACCGCG 11414 30 96.7 31 .............................C CCAACATGCTGATCACCGGGGTGCCCGGGGC 11353 30 96.7 31 .............................T CCGTTCCGGTGCTCCCCAGTTGTAATGTACA 11292 30 96.7 31 .............................C AGCCCGGCGCCAACGGCGCGGGGGCGGGCTG 11231 30 96.7 31 .............................C CTTCCGTCGGGGCAGCAGGCTCCGCACCATC 11170 30 96.7 31 .............................T TCCGGAGGTTGTAGAAGCGGGTGCTGCCGCA 11109 30 96.7 31 ............................T. CGGTGGTGGCCGCATTCGCGCTCGTGGTGCA 11048 30 100.0 31 .............................. GTAAGGGCTCAGTCCTAGAGGCTCGCGAACT 10987 30 96.7 31 .............................T GCTGGACGGCGAGGTGCGCTTCGGGCTGCTC 10926 30 100.0 31 .............................. GCGTCTCTGAGCTGGGGGACGGCGGGATGGG 10865 30 100.0 31 .............................. TTTTGCCCACGCCGCCCTTCTGGTTGGCGAA 10804 30 100.0 31 .............................. CCGCCGCGCTGGGACGCGGCTTCTGACGGCT 10743 30 100.0 31 .............................. TCTCGGGGTTGGTCCACCACGTCACCGTGAC 10682 30 100.0 31 .............................. TCCGCCGGTTGGCCGTGCTGTCCGGCTACAG 10621 30 96.7 31 .............................T CGCCGTGCTGGCCGCCTCCCGCACCGCACCC 10560 30 96.7 31 .............................A GACAAACGCCACCTGTTTGTTGGCATCGTCG 10499 30 100.0 31 .............................. CCGTGGCGCTCCCCGAGCCCGTCCCCTGCCG 10438 30 96.7 31 .............................C GCCGCGAATTCGGTGAAACTCCCGCAGCAAT 10377 30 96.7 31 .............................C GCCCTTGTCCAGCGCCGTCCTGAGAAATGCG 10316 30 100.0 31 .............................. CCGCGATGGAGGCGGCCGGGTACGGCGTCCT 10255 30 100.0 31 .............................. GCTCACCCTTCCTGACGTGGATGGAGACCGG 10194 30 96.7 31 ........A..................... TCTTCTCGGAGTACTCCCGCGCCGAGGGACG 10133 30 96.7 31 .............................T GGCTCGGCCAGGCGTCCACGCGGACGCCGTT 10072 30 100.0 31 .............................. CGATGACCGCCCTGCGCAAGCCCGCCTGACT 10011 30 96.7 31 .............................C TGTTGGCGCCGGCCGGGACGTGACGGCATGC 9950 30 96.7 31 .............................C TCCGCCGCTTCCTTCGCCGACCGCTGCGCCT 9889 30 96.7 31 .............................T ACGCCGTGCAGACACCGACCCTGTGGGCGGT 9828 30 96.7 31 .............................C GGCCTCCCACTGGTGGCCGGCCCCCGGCTCC 9767 30 100.0 31 .............................. AGGAGACGACTGATGCCCGATCAGCCGACCA 9706 30 96.7 31 .............................T GCTCCAGCATCCACAGCACCGCCCGCAGCTG 9645 30 100.0 31 .............................. CCGGCGCCAGCTACCAGCAGCTGGGGGACGC 9584 30 96.7 31 .............................T GCGTCGCGGGGCGGCGCCCCTGAACGGCGTT 9523 30 96.7 31 .............................A GGGCGGCGGCGGCATAGCCCACGCCGCCGCG 9462 30 100.0 31 .............................. CCGATCTGGCGACCACCGTCGATGCTGTCAC 9401 30 100.0 31 .............................. GCGCGGGGTACCAGAGGGTCTGGGCGTCCGC 9340 30 96.7 31 .............................C AGCACGGGAAGCGCACGGTGCGGGAGGCCCC 9279 30 100.0 31 .............................. CCTCGTCGGTGCGTCCGCGCTGCACCAGCAG 9218 30 100.0 31 .............................. GCCCGTTGAACACCGAGCCGGCGGTGGCGGC 9157 30 96.7 31 .............................C TGGACGCCTGGATGCGCCAGCACCGGGCGCC 9096 30 100.0 31 .............................. CCTCGTCCAGCGGGCCGTGTTCCAGGGCCAA 9035 30 96.7 31 .............................C TGGACGCCTGGATGCGCCAGCACCTGGCGCC 8974 30 100.0 31 .............................. CCTCGTCCAGCGGGCCGTGTTCCAGGGCCAA 8913 30 96.7 31 .............................C TCCCAAGAGATCACCGGCACGACGTGGTTCG 8852 30 96.7 31 .............................C AGGCGCGCGCCGACAAACTTGCCGAACGACT 8791 30 96.7 31 .............................C CGGCGCGCCGGGAAGCATGATTTCCGCAAGC 8730 30 96.7 31 .............................C GCTGGACGGAGCCCGCTGCTCGAAGCCGGAC 8669 30 96.7 31 .............................C GCTGGACGGAGCCCGCTGCTCGAAGCCGGAC 8608 30 96.7 31 .............................C GGAAGCACAGCGAACACTCCGGGCCGCTCAA 8547 30 96.7 31 ............................T. ACGATCGGCTGCTGCTGAGGAGGCTGCGGCT 8486 30 96.7 31 .............................A GGACGCGCTGCGGGGTGGTGTTGGTGACGAC 8425 30 100.0 31 .............................. AGCGGCCGTTGTAAGCGTTCGTCTCCAGAGT 8364 30 100.0 31 .............................. CGCGCTGGCCCGGCGCGAGACGGATGCCCAG 8303 30 93.3 31 ..................A..........A GCGACGAACGCCGAGGAGTCACGATGAGCCG 8242 30 96.7 31 .............................T CGCCGGCCTGCCGCCCGTCCGGGCCGACCTC 8181 30 96.7 31 .............................T CGCGGTGCAGGCCCTGGGCCTCGTCCCGCAT 8120 30 96.7 31 .............................T CGCGGTGCAGGCCCTGGGCCTCGTCCCGCAT 8059 30 96.7 31 .............................T GTCCCCGGTCGGCTGATCGCGATGGCCATCT 7998 30 96.7 31 .............................C GCCCCCTTTCTGACACCCCGTCTGACCTGCA 7937 30 96.7 39 .............................C CGGAGCCCGTCGCCGCCTGACGGTCCGTCGGCCCATGGG 7868 30 96.7 31 .............................A GGCCGTCGAGGTGGGCGGCGCGGATGATCAC 7807 30 100.0 31 .............................. CCGTCAGGCCCGCGCCGAGGCGAAGGCGGTG 7746 30 96.7 31 .............................C GGGACTCAGCACGGATGGTTGGGGAACCAGA 7685 30 96.7 31 .............................A GCCCGCTTCCGAACTCCCGGTCCTCGCCGGG 7624 30 96.7 31 .............................A CGTCGCCAGCGCGCCGCCGGCGGCGCCCGGA CC [7614] 7561 30 96.7 31 .............................C TCGCGGAAAGGGCCTCGATCGAGATGTGGCG 7500 30 100.0 31 .............................. TCGACCTGGCTCTGCGCTATCTGAGCGCCCG 7439 30 100.0 31 .............................. CGAGCGCAGGGTTCGTGCCCGGCGCGCTCCC 7378 30 96.7 31 .............................A CCGAGACGACGACCGCGACGGGATCCCTGCT 7317 30 96.7 31 ...........A.................. CCGAGCATTAAGCCTGGTGGAGACGGATGCG 7256 30 100.0 31 .............................. CGGTCATCTCGTACGCGATCGGCTTCCTGCT 7195 30 96.7 31 .............................C TGACGCGGGATCTGGCCGGTCCCCAGCGCGG 7134 30 93.3 31 .........................C...T ACTGCTGGCGTTCGACGGCGTCGTGGCGATC 7073 30 96.7 31 ......................G....... CCTCCCGCAGGCTCGGGTGGGCCGACGACCC 7012 30 93.3 31 ............................GA CGATCCGGTTGCCCTTCTTGTAGGAGGCCAG 6951 30 96.7 31 .............................A GCCGTCAGCATCGCACGCAGGAGGACCCGTT 6890 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 106 30 97.5 31 GTGCTCCCCGCGGACGCGGGGGTGGTCCCG # Left flank : GCCCTCCAATCCGACGGTGACGCGGAGCTGGCTGCCGGTGTCAACTACGCGGACGAGGCGACGGTGATCTGGTGACCGTCATCGTCCTGACCCTCTGCCCGACGGGCCTTCGGGGCCTGCTCACGCGCTGGCTCTTGGAGATCTCCCCTGGCGTCTTCCTGGGCGCACCGTCAGCGAGGATCCGCGCGATCCTGTGGGAGGAGGTCAAGCAGTACTCCGGCCAGGGCAGAGCGCTCCTCGCCTACAGCACCGACAACGAACAGGGCTTCACCTTCGAGACCCACGAGCACTCTTGGCACCCTGTCGACCACGAGGGCCTGACGCTCATCCACCGCCCGAACTCGACCCGCATATCTTCGACGTCGTCGCCCCCAAAGGGCTGGAGCAAGACGTCAAAGCGCCGACGCTTCGGCAATCGGTGACGTATGCCCCAATTGCCAGATACTGCGTTACTCGCGCAGAAGCACGATGGTCTTTGGCGTTGTTGCTGGTCATCCAGA # Right flank : CCAGGTCGACGTTCGGGTCCTTGAAGTGGCCGTGCTCCCTGCGCGGCCAGAGGTCTGCACCAGCCCGGAAACCAGCCCCTGATTGCTGTCGTCGATGCCCTCGGTGGCCTGCGACATGATCGAGCTGGACCCGAAGGCGAAGTCACCGCCCAGCAGGTTCATCGTCGGGATGACCGCGGACCAGCAGTCGGGCGAAGTGCCGGAACTGACCAGGAGCCAGACATAGCCGAGGCCGAGTGAGGCCATCACCGAGAAGATCAGCAGAGCCGTCCCGAACCGGTCGATCAGCTTGCCGGTGATCGGCGAGGCGACCATCACCAGGACGCCGGCGGGGAGGAGGGCCATCGCCACCGGCAGGGGCGACCGGTGCAGCACGTCCTGCAGATACAGCGTCATCATGAACTGGAAGCTCATGTACCGCCAGGGTCCACGAGCGCACCAGTAGACGCGGCACGGCACAGACGGCGAACGGCAAGTTGATCTACCGGTTTTCTACCGTT # Questionable array : NO Score: 5.49 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.35, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGGACGCGGGGGTGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //