Array 1 431-759 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGJA01000035.1 Acinetobacter baumannii strain ARLG1873 ARLG1873_NODE_215.ctg_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================== ================== 431 29 100.0 31 ............................. GAAAAACGTAACGCAGAACTACAAGCTGTTA 491 29 100.0 31 ............................. TCCAATTCGCATAATGAGCACTGATGTTAAA 551 29 96.6 31 ............................A AACGGTAAAGTCATTCCATTTGTACGTTTAT 611 29 100.0 31 ............................. CACAGTATGAAAAGATTGGTGATGCTTCGGA 671 29 96.6 31 ............................A CTTGATGCAGGTCAGTGCAATAAAAATGATA 731 29 96.6 0 ............................G | ========== ====== ====== ====== ============================= =============================== ================== 6 29 98.3 31 GTTCTTCATCGCATAGATGATTTAGAAAT # Left flank : GGTTGTGCGATAAATTTTAGGTGTCGACTTATTCATTTGAAAATTATATTGTGGAATAAGCCTTTAGAGATAGGTTTGTGCAACAAAGCCCCCTAGATCTGTCATGAGTTCATAAATTTCATTACACGATAAAAAAGTCATTTCACTTAACCTACATATCATTTTGAGGTATTTCTAACGAATCAAGAAACAAAATTCTAATGAAGAAACAGCGATACTATAAAAATAAAATTAGCTGCGATGGAAGGCTACTCTAAGTCGATATAAAAATTAAGCTTCTGTTGCGTACGAGAACCTTATTTTTAGTAATCTATTTTTGCATCACGCCAAAGCCATAATCATAAGACCAAGTAGGCACTTCATCTCTATTGTAAGGTGTTAAAGATATACGGCAGCCTTGCTCATTGGCAATTTGGTACTCTGCTTCGGAG # Right flank : ACATGGCTATGAAGTTTTATACACATACAATGTTA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.97%AT] # Reference repeat match prediction: F [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.90,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 67500-62787 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGJA01000062.1 Acinetobacter baumannii strain ARLG1873 ARLG1873_NODE_3.ctg_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 67499 30 96.7 30 .............................A AACAGGTGAAAGATCAAGTTGCCTCACAAC 67439 30 93.3 30 ............................TG AAGACACTTTTCTATACCGCTACGTTACAT 67379 30 96.7 30 ............................G. GGTTGCAACTTTGCTAAAAGTGGTTGGGAA 67319 30 96.7 30 ............................G. CAAAGTGTCTAGACTACGCCTTGAGACACT 67259 30 96.7 30 .............................C ACCAATTGACGCTGACCTTTAAAAGTCAAA 67199 30 100.0 30 .............................. CTTCCGCAATGGCCTTTTTGAATGCTTCAT 67139 30 93.3 30 ............................GA CTCATATGGATGAAATAAAGCAGCAGCAGA 67079 30 93.3 30 ............................TC CCCAATAGACTGAACTGTCGAAACGCTTAT 67019 30 93.3 30 ............................GA GCTTTGTAATAAAACAAGATGTAATCGGGG 66959 30 93.3 30 ............................CA TGGTTTTTCCCCTTTATTTGAGCAATCGAC 66899 30 96.7 30 .............................A AGGCTTTGCTTATCGATGCGGATGCCGGTG 66839 30 93.3 30 ............................TG TACGTCAAATTACTTCTTATTGTAGTTGGG 66779 30 96.7 30 ............................T. CATCATCAAATAAATCTTCGTATTTAGTGA 66719 30 93.3 30 ............................TG CTGCTTGAACAACATGAATTGCCCATTCAG 66659 30 96.7 30 .............................A AAATATTGATACGATGGATTAACAACAGAA 66599 30 96.7 30 .............................G AAGCGTCATGAATATTTGGTTTGGCTTGAA 66539 30 93.3 30 ............................TG ATCATTAGTGCCTCTTCGGAAATCAACTTT 66479 30 96.7 30 .............................A AGAGTATGTATTAGAGGGCTATGCACTTAC 66419 30 93.3 30 ............................TG AAAATAATTAAATGGTCTATCACCGTCTTC 66359 30 96.7 30 .............................G TAGATGCAGCACACAGCAATCAGGGCGCTC 66299 30 96.7 30 .............................G CGCGGAAGAGCATTCGGGTGAGTTGGATTA 66239 30 96.7 30 .............................G GCAAAAGGAACGGCTGGCTAACGCCACTAT 66179 30 96.7 30 .............................C ATTCCAGCAAACAACAGTGTAGATCCAATT 66119 30 93.3 31 ............................TC TTTCACAAAAAATGATGGTTATTTTGAATGT 66058 30 96.7 30 .............................A TAAACAGCATTTCATCAGTTGCGTAATAAA 65998 30 93.3 30 ............................TC CAAAAGAGCAAGCAGAATTTAGTGCATGTA 65938 30 93.3 31 ............................CA CCAACCGACAATGTAGCATCGGCAACTAAAC 65877 30 93.3 30 ............................TA TGACACGCTATCAAGTGACGGTGCAAATAA 65817 30 93.3 30 ............................TG ATCTCTCTTAGCTTTGTATTCAGGGTCTAA 65757 30 93.3 30 ............................TG CTACAGATATAACTAATCAGTTAAATAACT 65697 30 93.3 30 ............................TA TCCATTTTCTGATGGTGGCGCATTCTCTTC 65637 30 93.3 30 ............................TC AAGCAAATCCCGATGATCCTACAGCACCTA 65577 30 96.7 30 .............................C AAGTTAGAGCTATTAGAAAGAATTATTTAA 65517 30 96.7 30 ............................T. TCGGGGTGGTTTTATTTTGCCTAAATTAAT 65457 30 96.7 30 ............................T. GTATTGTTGGGTTTCTAGTTACCAGAGCAG 65397 30 93.3 30 ............................TA AACCATTATTAGGGTTTACGGTATTACTTG 65337 30 96.7 30 .............................G TCCATAAGACCCTCCATTTGTTTATATCTT 65277 30 96.7 30 .............................G AAGGGTATAGCAAATATCGTGATGGAAATG 65217 30 100.0 30 .............................. CATCGCCAGCAACAAACTGCAATGAGCCAG 65157 30 96.7 30 ............................T. GGTGTGATCATCAATACAGATGGGACAGGT 65097 30 93.3 30 ............................CG ATAGAAGATACAGAAGAAAATAATGCTATT 65037 30 96.7 30 ............................G. CAACCAAAGAACCCCAAGCAAATCGAGCAA 64977 30 100.0 30 .............................. TATCTAAGCGTCCCATTAGAAAACCTTTAT 64917 30 96.7 30 ............................T. TCAGATGAAACCATACGCACTAAATGCATT 64857 30 100.0 30 .............................. GTAATCTTGGTATGGGAGGTGTAAAGCCAG 64797 30 93.3 30 ............................TG TTGACCCATCTATTGATGCATCTGTAAATA 64737 30 93.3 30 ............................CG ACTGCTCCTAAAGCTCCGCCGACTGACATT 64677 30 100.0 30 .............................. GTGAACATGCATGCATTGATGCAATATGCG 64617 30 93.3 30 ............................CC ACTGTAGTACGAGTAACGTTACCGACTAAA 64557 30 100.0 31 .............................. GACATACAAACCCCTCAATAAAAGATGGGGC 64496 30 96.7 30 .............................C AAATCTTGATGACATGCTCAACAAAACACA 64436 30 96.7 30 .............................G AGGGTTATGTTTTGGTTTCTAAGGATAAGT 64376 30 100.0 30 .............................. CATACATTAACTTTAAATAATCATTCTGAC 64316 30 96.7 30 .............................C ATGAAAAACTAGCTTCCACGACATCAATCC 64256 30 90.0 30 ...........T................TC TTGCTGTGCATAAGCCTGTAAGTTATTTAA 64196 30 96.7 30 .............................G TTGCCCGGATCACGACGATCATTAGAATAA 64136 30 96.7 30 ............................T. GGAGTCATCAATAAGAAACAATCCATTTAA 64076 30 96.7 30 ............................T. CTGGATCTATTCCAAAGTGTTTGCAAATTT 64016 30 100.0 30 .............................. CTAATCGATGGTGAAGATTTTGAACAAGAT 63956 30 96.7 30 ............................G. TATCTCAATGGTGTGACTTGTTAGCACTAG 63896 30 96.7 30 ............................T. AATGCAATTCGGAGCATGGCGTACCGAAGA 63836 30 96.7 30 ............................T. GTGTGGACTCCTCAATCAGCATCTTGAAAT 63776 30 93.3 30 ............................GC TCACAAGTCAAATACTATTTTGCATTATTT 63716 30 100.0 30 .............................. CTTTTTGCTTATAGTAACAAGTAGCAGAGT 63656 30 93.3 30 ............................GA ACTGCAATGCTGTGAGTAACGAACCTTGAT 63596 30 96.7 30 .............................C TTACCAGACACAGCACCTTCTTGAAGCATC 63536 30 100.0 30 .............................. GACGGTTAGTTACTTTTGATGTACCGCCAC 63476 30 96.7 30 .............................C TAACTCACCGCGATAAATAGACGCGATACC 63416 30 96.7 30 .............................G AGACACAGAAAAAGAATGTGAACAATGGGC 63356 30 96.7 30 ............................G. CGATTAAATCAGTCAAAGGACCCTAAGCCA 63296 30 96.7 30 .............................A CTGAAAAGATGTTGAGTGCAGGTTGTTCTT 63236 30 96.7 30 ............................T. GATGCTGAAAACTTCACAGCAGGCAATCCA 63176 30 93.3 30 ............................TG TAAAGGATGTGAGGAACGTCGTGAGTGGAT 63116 30 96.7 30 .............................A CTGACTAGTGATTTGAGGAATGTGCTCACC 63056 30 93.3 30 ............................CA AACACAGCATTATTGGGCCTTCAATACGAT 62996 30 93.3 30 ............................GA TGCAGGCGGAGTCTGCTATGCGACTGGTAC 62936 30 93.3 30 .................T...........A ATAACCACGGTTATGGTAAGTCACTTTTAC 62876 30 80.0 30 .......A.A.....T.T..........GC GTTCAGGTTGAGGAGATGAAGTGATGTGAT 62816 30 66.7 0 ...T...A...T.....T..C...AGCGT. | ========== ====== ====== ====== ============================== =============================== ================== 79 30 95.2 30 GTTCATGGCGGCATACGCCATTTAGAAAAT # Left flank : GGCAAATGGCTAGAACGATTCATTGATTATGTACATATCACTCAACCGAGAGAAGTGCCTCGAGCCAAGATTACAGGTTATGCGCATTACTATCGAGTTAATCCTAGAATGAGTGTTGAGGAACGTATAGTTCATCAAGCACAACGTCGTAATATTTCTTTGGATCAGGCTAGACAGCATTTTAAACAATATGTTGAGCAACTAGTGGTTGAACCATACGTAAGTTTAAAAAGTCTCAGTGCAAAACGTGAGGAAAATGTAGATCGCCCCTATCGTTTATATATTGGTAAATCACTTGTTGATGAGGCAAGGGATGGGATGTTTGGAACTTATGGACTAAGCCGAATGACAACAGTCCCAGAGTTTTGACCCAATATTTTTTCTATTCTTTAACAGCTCAATAAAATCAATAAGTTACAATAGGTCTTTTTTGATTGGGTAAAATGCCAAAATCCATGATAAACACTTGTTGTAACTTATATTTTTACTATAATTTTATA # Right flank : AAGATAAAAAAACAAATGATCACTGCTTAGTATTCTTTATCTTTAAATTTTAAAGAAGAAAATATATTCTGAGCTCAAGATATTTAGTGGTGAAATTTTTATGCGCGGTTTATACCTCATTACCAATGATGACCCAATCCAATTATTATTAGAAAAATTAGACGCCGCACTCGCAACCCGTCAAATCGCAATTTTACAGTACCGCCGTAAAAAAATAGACAAAGCCGAACAGCCTGCTGAAGTTGAACAGATTAAACAGTTATGTGAAAAATATCAGGTTCCTTTTGTCATTAATGATGACCTAAAACTGGCTGCTCAGTTTGGTTTAGGTGTGCATTTAGGCCAAAGTGACGGTGAAATTACCGATGCAAAATCGCAGTTACCAGAAGGTGTCATTATTGGCCGTACTTGCTTAAACTCTTTAGAGCTTGCTCAAAAAGCAATTGCCGATGGCGCAACTTATGTTGCCTTTGGTGCGGTTTATGCAACTGCCACTAAAC # Questionable array : NO Score: 5.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.15, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.60,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 2974-2583 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGJA01000014.1 Acinetobacter baumannii strain ARLG1873 ARLG1873_NODE_154.ctg_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2973 29 79.3 32 ...A..T..ATA................T CACAGTATGAAAAAATTGGTGATTGCTTCGGA 2912 29 100.0 31 ............................. CTTGATGCAGGTCAGTGCAATAAAAATGATC 2852 29 96.6 31 ............................G ACATGGCTATGAAGTTTTATACACATACAAT 2792 29 100.0 31 ............................. CAACAACGCTGTCAACCTTTAGCTAATAAAT 2732 29 100.0 32 ............................. TTAAGCCTTTGATTCCATTGGGTTTTTCTTAG 2671 29 100.0 31 ............................. AGAAAGGTCTAGCAATTGGGGCTGTAGGTAC 2611 29 89.7 0 ........................AT..T | ========== ====== ====== ====== ============================= ================================ ================== 7 29 95.1 32 GTTCTTCATCGCATAGATGATTTAGAAAA # Left flank : AGAAATGCAATTCATCTTTTT # Right flank : TTGAATCTTAAAAAGAGAAAACCCCGAAACTTTCGTTTCAGGGCTTTTCACGAAGATGGCGTCAATTGAACAAATTTTATAAATAACTGTTTTATATAATTTAATATTTATAAAAAAATCCCAGTGTACACCACAGTGTACAAATTATCTATTGCTAGGCTATTTTACTGAGTTTAGTTGTCATGCTGGGTGACGAACTCAGGAGTTAAAAACACTCCCCTCACGCGCCCGCGCATTTTCTTGATTATTGTCTGACGGTATAGCGGTTTGCTGTGTTTTTTCGCTCCCATCATTTAATTGAAGCGGAATAGAGTATTTAAAGCTGCCCCTCTATTTGGTGGCTCAGGGGTCCCGAAAATTTGGGAGATTGAACATGGTGACTTTGGGTAACTCAGTTATCTACTGACTATCTTTAAGCTACTCGCATTTTAGAGATGTCCACACTGTATGACTGTACGAAAGTTTCGTAGTTCATTACCCAACGGAAATTTTCGCATACC # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: R [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //