Array 1 191922-193779 **** Predicted by CRISPRDetect 2.4 *** >NZ_SIFO01000002.1 Salmonella enterica subsp. enterica serovar Hadar strain 3135 3135_2_length_420960_cov_22.9521, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 191922 29 100.0 32 ............................. AACTTAACTCCAGCATTCTGGCAATTGTTGCG 191983 29 100.0 32 ............................. GCGACATCAAAATCTATTTTTCATTCTATCTG 192044 29 100.0 32 ............................. CTCCAGCCACATTGCGGCGCGACCGCTTTTAA 192105 29 100.0 32 ............................. CAATGTTTCATGCTACGCAAGAGACCAGAACG 192166 29 100.0 32 ............................. TGGTGGAGTGCCGAACCGCTACCGTTTCAAAG 192227 29 100.0 32 ............................. TCATGGCGTCATTCGGTACTGATATGCCAATG 192288 29 100.0 32 ............................. TCGTTTGTAGCCGAAAACCGGCTGGCGCTGAT 192349 29 100.0 32 ............................. TAATGAATCGCCTTTCTAAAATGAAAGACGAC 192410 29 100.0 32 ............................. GCATCGAACCGCTTATCCGTCTGTACCCACTC 192471 29 100.0 32 ............................. CTTTCATTGCGCAGGGTATGCAGTCGGTTTCC 192532 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 192593 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 192654 29 100.0 32 ............................. AATGGGATGTTCTCGATAATGGCGACGACGAA 192715 29 100.0 32 ............................. CGGTCATTTTAAAGAATCCCGTTAAACAACAC 192776 29 100.0 32 ............................. GACATTTCAGTTTTGAGCATGAACCTGATTCA 192837 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGTTGTTTAGTTCCT 192898 29 100.0 32 ............................. AAAACCGTACAACAGACAAAATATAAATATTG 192959 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 193020 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 193081 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 193142 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 193203 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 193264 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 193325 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 193386 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 193447 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 193508 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 193569 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 193630 29 100.0 32 ............................. GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 193691 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 193752 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 31 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTCCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTGATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 210461-212139 **** Predicted by CRISPRDetect 2.4 *** >NZ_SIFO01000002.1 Salmonella enterica subsp. enterica serovar Hadar strain 3135 3135_2_length_420960_cov_22.9521, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 210461 29 100.0 32 ............................. CGACGCTTCCATCGTCTGGCATTCCTGTTCGT 210522 29 100.0 32 ............................. CCCGCGTATTAACAACGACGAGCAGGGCGTGC 210583 29 100.0 32 ............................. GTTGCGCAGCCATTGAGCTGCAAACGGATCAA 210644 29 100.0 32 ............................. CGCCCCCCGCATACAGCGAGAGACGGGCCATG 210705 29 100.0 32 ............................. CGCCGGGCGCGGGAGTCCCGGGCGATCCTCCC 210766 29 100.0 32 ............................. GCCCGAAATCAACTTGCAACATTTCAGTTGGC 210827 29 100.0 32 ............................. CATATGATTGACGACAATGAATTTTTTTTCAA 210888 29 100.0 32 ............................. ATAGTTCATCTCTGTTCTCCAGCGGTTTCTAT 210949 29 100.0 32 ............................. ACGGCATTATCACGGCTATTTCTCTGGAAATG 211010 29 100.0 32 ............................. GACAGGACTTACGACCGGCTGGACTACGCATC 211071 29 100.0 32 ............................. CCACAGCCGCCGCGACAATAAATTAACTCACT 211132 29 100.0 32 ............................. AATGATGAGGGGCTGGCAACGTTTAGCGCCAC 211193 29 100.0 32 ............................. CTGGCCACTCAACAGGGAAATATCGCGTGCGC 211254 29 96.6 32 A............................ CCCATCAAGATAAACATCATAGCGAGCACCTG 211315 29 100.0 32 ............................. TTTGAAATCGCTATTCTTATTGCTGTAGCAGT 211376 29 100.0 32 ............................. CGTTAACTAAAACGAACAAAACAGGGAAATCA 211437 29 100.0 33 ............................. GCCGTGCGTCAGATCACCCCAAACGCTTTCTTT 211499 29 100.0 33 ............................. GCATTAGATTGCGTTGACGGTCACGTTCTTATC 211561 29 100.0 32 ............................. CGCCTCACTGATATTCTGCGGCGAGCTGAAAA 211622 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 211683 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 211744 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 211805 29 100.0 32 ............................. AACGCAGGAGAACCAGCCGCCGGTCATCCTGC 211866 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 211927 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 211988 29 100.0 32 ............................. AAGCCATTGACGCAACGGAAAACGCCAATGCT 212049 29 96.6 32 .................A........... GTATGATTTGGACATAGCTAATGATGTAAAGT 212110 29 100.0 0 ............................. | A [212137] ========== ====== ====== ====== ============================= ================================= ================== 28 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCACAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAAGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCAACAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCTGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //