Array 1 29243-26306 **** Predicted by CRISPRDetect 2.4 *** >NZ_PQVJ01000011.1 Avibacterium gallinarum strain NCTC 11188 conti016, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ========================================================================= ================== 29242 32 100.0 35 ................................ TTATTTCTTTGCAAGAATTGAAGATCTGTTTTTTC 29175 32 100.0 33 ................................ GGCTTGTAAAGTTAAATAATAACTTTTGCAGGG 29110 32 100.0 34 ................................ AAGAGTCATTGCAATATTGCCTTTTAATTTGATA 29044 32 100.0 33 ................................ GTTTTGAGTGTTAAAAGTTAAAAATTGCCATTT 28979 32 100.0 35 ................................ GATGACCCTATCGCATTCCAGCCTTTCAGGTCTTA 28912 32 100.0 34 ................................ AAACCTTAACACGTCAAAACCTAAAAAATTTTTA 28846 32 100.0 34 ................................ CCGTTATCAACTTAAGCATCAGAAAACAGCTGTT 28780 32 100.0 36 ................................ CCTCGGGTATCTAATCCTTTAGATAGTCTTTTGATG 28712 32 100.0 35 ................................ TAGTATGGATATTTAGATGAGGACTATAGATGCAA 28645 32 100.0 35 ................................ CCATAGGGGGGTGTGCCGCCCTACCGTTCAACCGC 28578 32 100.0 36 ................................ ACGCCTTGCAATTGTGCAGAAGATATGCTCTTTAAC 28510 32 100.0 35 ................................ GTCAATACCCAAAAACTAAATTTCTAAAAATTTTT 28443 32 100.0 36 ................................ TAAATAGATAACGAAAAAAACTATAAAACAGTGTAA 28375 32 100.0 35 ................................ AAGCATCAGAAAACAGCTGTTTTTTAATTAGATAA 28308 32 100.0 35 ................................ TTGTTCGCTTGTTTTTTGTACAATTTCCATCTTTT 28241 32 100.0 34 ................................ CCGTTATCAATCCAAGCATCAGAAAACAGCTGTT 28175 32 100.0 37 ................................ ATAGGATGATACTTCACCGCCTGTCGATCCCACATAC 28106 32 100.0 34 ................................ CCGTTATCAACCCAAGCATCAGAAAACAGCTGTT 28040 32 100.0 34 ................................ AATTGCCAAGCCGTGCAAATTTTGCGAGATTTTT 27974 32 100.0 34 ................................ GTTATCTATTAAAAAAACAGCTGTTTTCTGATGC 27908 32 100.0 36 ................................ TTAGGGCTGGCAATCCCCGCAAGGATTGTACCTAGG 27840 32 100.0 35 ................................ AGCTTGCAAAGTTAAATATTAACTTTTTATTGGGT 27773 32 100.0 34 ................................ ACAGCACGGATCGGCTTTTCCTTTCTATTTTAGC 27707 32 100.0 37 ................................ AGAATAGGCATTCTTTCAACAAGAGGCTATTTCTTGC 27638 32 100.0 35 ................................ CATTTCCAGCTTTTCAATGCCAAGATCGATGGCAA 27571 32 100.0 35 ................................ TTAAGTCTGGGCGTAATATATTAATGTAATATAAA 27504 32 100.0 35 ................................ AAAATCAGATTTTATTAAGTGATGAGCGAACAAGA 27437 32 100.0 35 ................................ GCCTTTTGTTAGGGTCGCGATATGCTCGCCCACGT 27370 32 100.0 35 ................................ TCTCATTTCGTGCCTTTATTATATTTTATTCTGTC 27303 32 100.0 35 ................................ AAGAGGCAACAAATAATGGCAATTATAATTGATAA 27236 32 100.0 35 ................................ TAAACATCCTATCATCAACACAAAAGCAAAAAAGG 27169 32 100.0 36 ................................ AAGAGGCAACAAAAAACGGCAAGTAGAATAGATAAC 27101 32 100.0 34 ................................ TCTTGGTGAGCAAATGGCGGTGATTGGTCAGCTT 27035 32 100.0 34 ................................ ATCAATAATAAATAATGTTTTATCATACCTCGTT 26969 32 96.9 33 ..........A..................... ATCTTCACGTTGTAATCGCCCTTTTTTGCCTAA 26904 32 96.9 33 ..........A..................... TGCAGGCGGACACTGTTTTTATGCGTCCAGCGA 26839 32 96.9 35 ..........A..................... GTGGACAAAATGTAAGCCCCGACCAAATGACTGCC 26772 32 96.9 73 ..........A..................... AATGGCAAGCGTTGTATCAATTATTGCGTGAATTGAAACAATATCCTTGTTGGCTTTGTTGATGTTACTGCGT 26667 32 96.9 34 ..........A..................... GCTGTTTTTGGCTCTCGACCGCCCTACCAAAAAT 26601 32 96.9 33 ..........A..................... AACCCAATTTCTCGCCGTGATATTAATTTAGAT 26536 32 96.9 34 ...T............................ TACTTTACTCTTTCCCCACACAGAGCAATGATGT 26470 32 100.0 34 ................................ ATTACCTCTCGTTGCGTTAGCCCGATATAATCTT 26404 32 90.6 35 ...........................A..GA ACATTCACATCCGCTACTCTAGAGAAAGCCATTAC 26337 32 75.0 0 ...TT...C.TT....A...C........C.. | ========== ====== ====== ====== ================================ ========================================================================= ================== 44 32 98.7 36 CGGCCATCTCCCAGATGGCCGTGAATTGAAAC # Left flank : TGCGTTAGGATAACAATATGTTAATGCTGATTACTTATGATATTTCTCTTGATGATCCACAAGGTCAAGCGCGTTTGCGTCGTATTGCGAAACATTGTCTTGATTATGGTGTTCGCGTGCAATATTCCGTGTTTGAATGTGATATTGCCCCAGATCAATGGGTAGTATTAAAATCCAAACTATTGGATACTTATAACCCTGAAACTGATAGTTTGCGCTTTTACCATTTAGGAAGTAAATGGCGCAGAAAAGTAGAGCATCACGGTGCCAAACCATCAATTGACATTTTCCAAGATGCCATAATTCTATAATCGCTAACCTATTGTTCTCATCAAATCCCTGCTAGCTTAGCGAAGTATCATTGTTCTTTAAAAATCAAATAATTAATTCTGAATTTTATTTAGCAATGATTATGCTATAATCTATCTTCGCACAGAAAAGAATGATTAGCGAAATACCAAGGTTAATACCTTATTTTTGTTATATTTTTTCCCTGTGCT # Right flank : ATTGTAACTAAGAACACTATTAATCTTTATACAAAAAGTAGTAATCATTTATTCCCATTTTAGTTTTTAATGTTCTCTTGTTTTAAAGAACGCGACATCAGGATAACGATCTTGGGCAAGATTGAGATTGACCATTGTTGGCGCAATATAAGTGAGATTATCTCCCCCATCTAGCGCAAGGTTTTGTTCATTTTTGCGTTTAAATTCTTCGAATTTCTTCGCATCATCACATTCCACCCAACGGGCAGTGGCAACATTTACGGTTTCGTAAATGGCTTCCACGTTATATTCCGATTTTAAGCGCGCAACTACCACATCAAACTGTAGCACCCCAACCGCACCAACAATTAAATCATTATTAGTTAATGGGCGGAAAACTTGCACCGCACCTTCCTCGGAAAGCTGCACCAAACCTTTGAGCAATTGCTTTTGTTTGAGTGGATCTTTAAGACGAATGCGGCGGAATAATTCTGGCGCAAAGTTTGGAATGCCAGTGAATT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:0, 3:3, 4:0.94, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGGCCATCTCCCAGATGGCCGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.00,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : NA //