Array 1 4-399 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCOP01000122.1 Salmonella enterica strain NGUA-17_S5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 4 29 100.0 33 ............................. TTTTATCGTCGTAGCCTATTGCTAACTTGACGC 66 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 127 29 100.0 32 ............................. TAATCTTTCAGCGCGTCCTGGCGGTCAACGAG 188 29 100.0 32 ............................. TTGAGTGCCACGGCCAGAGCGGTAGCCATTAA 249 29 100.0 32 ............................. AAAACGGGTTTGCGGAAGGCTGGAACGCCTGC 310 29 100.0 32 ............................. GAGCGGATCCGGGATCGTCAGCACTCTGAACC 371 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 7 29 100.0 32 GTATTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTCG # Right flank : CACGATTTTATGTGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [1.7-15.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 274944-275825 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCOP01000055.1 Salmonella enterica strain NGUA-17_S5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 274944 29 96.6 32 ............................T CTCAACCACGCCAACTGAGCAAGATATCCTAG 275005 29 100.0 32 ............................. CTGGTATGCCAACTCTTCCCCGCGCTGCTGGG 275066 29 100.0 32 ............................. TTCGCCTTGTCGGTTTCGTAGGTTTTTTCCTC 275127 29 100.0 32 ............................. TGTGCTGGACAGTACCTACAGTAACTTTGTGG 275188 29 100.0 32 ............................. GAGTGTACGAAATGTCCAGACAATCGAAATAC 275249 29 100.0 32 ............................. ACGATAGTAAATATCCAAATATAAAATGCCGC 275310 29 100.0 32 ............................. GGAAATTAGCTGGTGAAGTTGAAACCCTTAAT 275371 29 100.0 32 ............................. TTGGCTATGCTGATGACGGTTAGCCACTGGTA 275432 29 100.0 32 ............................. CGCATAGCAGAACTGGAGGCGCGGACGGTGAA 275493 29 100.0 32 ............................. ATTAGCTAACTGAGTGATCGTTAACCCCTTTA 275554 29 100.0 32 ............................. CAACGTTATTGAACAGGGGGCGAAGGCCACTC 275615 29 100.0 32 ............................. CCATGTATTCAGTGTCACCTTTAGCATGAGCA 275676 29 100.0 32 ............................. GCAAACCCGCGCCGGAATATTACGACGCTGAC 275737 29 100.0 32 ............................. CGAGATGTCTCTGTCACTGGCTTTAATCCAGC 275798 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 15 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTATCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCCGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 284463-285407 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCOP01000055.1 Salmonella enterica strain NGUA-17_S5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 284463 29 100.0 32 ............................. GCGACCTGACTGAATCTCCTTTTTCAGTTGGG 284524 29 100.0 32 ............................. CGAATTTTGCGCGTGATGGGCGCCCATGAGGT 284585 29 100.0 32 ............................. CCTTGCAGTTTCCCAGGTGCTCCGGTATTTGC 284646 29 96.6 32 ............................T TACAAGCCCGATATTAATGCGTTGCTCTATTC 284707 29 100.0 32 ............................. TCTGGGTGCTGATTTATGGAGAGGATCAGCAG 284768 29 100.0 32 ............................. GACGTTACCCAATACATGATCCGGGGAGTTCT 284829 29 100.0 32 ............................. GTATTTACCACGCTGGCATCGGGTAAAAAGAT 284890 29 100.0 32 ............................. CGCCATCACGTTAGTAGCTGCGCCCCCCAAGA 284951 29 100.0 32 ............................. CGCGATATCTTCCCGTGTCACCTCGATGTACT 285012 29 100.0 32 ............................. AACATGATCCGCAACCCGTCGCTGTCAAAAGC 285073 29 100.0 32 ............................. CCCCGTTCTGTTACCCGCGCCCGCTGGGCTGT 285134 29 100.0 32 ............................. GGACGGATATTATCCAGCATTTCAGGGAGTAC 285195 29 100.0 32 ............................. CCCAAAAAATCAGAAAAACAATGATTTTAACC 285256 29 100.0 32 ............................. GACAATCAGGGGGCGCTGGTTGACAGTATTAA 285317 29 100.0 32 ............................. AGTGAGCAGGAGCGCAACGTTTATCAGCTTAT 285378 29 96.6 0 ............T................ | A [285405] ========== ====== ====== ====== ============================= ================================ ================== 16 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AATATGCAATACTGGTGGCTGGCGTTCATCCGGAAGCGTAGATTTTCGTTGCCCATGGGCATCGCGGATATGGCGTTGCAGGCGACCGGCGCGCTGGATCAATAAATCAATCGGCGCCAGATCGGTGATCATCCAGTCAAAGTCCAGATCGAGACTTTGTTCAACGACTTGTGTGGCGATTAATACCTTACCACGTCGTTCAGAAACGGGGGCATTGTTACCAAACCAGTTTAACGTTTTATTTTCAATAGCAATACGATCGATAAAAGCAAAACGGCTGTGGAAAAGCAAAAGATCCTGCTCTGGAACGATTCCCTCGTGTAGCAACTGCTGGTAAGTATCCAGCGCATCATCAACCGTGTTGCGGATCCAACAAATGCACTGTCCGGTTGCCACAACGCGATAAATAATGTCCAGTGCTTCCTGGCGCTGCTGTATCCAATTAACGGCTACAGTCCTTTGGACTTCGGGACGTGTGGCCAGTGGTTGCTCTAACAGAC # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGTACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //