Array 1 4450298-4449780 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBCK010000001.1 Actinokineospora baliensis strain DSM 45656 Ga0451094_01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4450297 29 100.0 32 ............................. GCATCCGCACTGCTAGCCCCCTTTGCATTCGG 4450236 29 100.0 32 ............................. CACGCCACGTACAGGGGCCCAGCGATCGAGGC 4450175 29 96.6 32 ...............A............. CGGTCCCGGCACGGGATCGTGGCCGTCACCGA 4450114 29 100.0 32 ............................. ACGCCGCGCTGTCCAACCCGGGGAAGTTCATG 4450053 29 96.6 32 ............................T AGCCCGGCGGCCACCTTGTCCATCGCGCGCAC 4449992 29 89.7 32 C.............G.............G TTGTCCACGTAGAGGTGCCGCAACGCGGGCGG 4449931 29 96.6 32 ...............T............. GGACGCAGCGTGCGGCACACACTGCGGAACCA 4449870 29 93.1 32 ..............GA............. ATGAACCCACCGCCCTGTCGGGCGTCGGGATC 4449809 29 82.8 0 ..G..........G......C..C....T | G [4449787] ========== ====== ====== ====== ============================= ================================ ================== 9 29 95.0 32 GTCCTCCCCGCGCAAGCGGGGCTGTTCCC # Left flank : GACAGCCCGCTTCGGCGACCACCGCCCGAACCCGGGCCCCATCACCGCCAAGTCCGTCCTACCCATGAGAGCCTGGGTATCCCCCACCCTCCGCCACGGCAACCTGTTCCTAGCGGGCGACGCGGGCCACATAGTCCCGCCCACCGGCGCCAAAGGCCTCAACCTGGCCGCTGCGGATGTGACGCTCCTGGCAGCCGCCTTCACCCACCTGCACGACACCGGATCCCTGGCCTTGCTGGACGCCTACTCCGACACCAGCCTGCGCCGGGTGTGGCGAGCGGAGCAGTTCTCCCACTTCATGACCACCACCCTGCACGTGGCTCCCGATCAAACCGACTTCGACACCCACCTCCAGTTGGCCCGCCTACGGCAGATAACGACGTCCCGCGCGGCGGCGACCAGCTTCGCTGAGGAGTACACGGGTATCGCGGCAGGGTGAGGAGGGTTTCGAAAGTGAAGGGAATGGCCGCTGCGGCTGATAACCTCCCTGGTCAGGAAGT # Right flank : CAGAAACGACCGTGGAGCCTGAGATCAAAGGGATCCCGGGCTCCACGGCCGTTCCTGGTCAGTGGGCGGCGGTGCGGGTGGTGATGCGTTGTTCGGCGGCGGCGATGGTGAGGGCTATGGCGGTGGCTGAGCGGCCGGTGAGGAAGGTGTAGTGGTCGCCGGGGACTACGGCGTGGTGGGTGGGGCCGGGGAGGGCTTCTGCCCATTCGGCGCCCGCGTCGGTCGACTTGGCCGCGGCCACTATCACCGTGTCCACGTCCACCGCGGGGGGTTGGTAGCCGGCGATGGTGTGCAGGTGTGTTCGGTAGACGGCGAAGCGGGTTGTCATGTTGGCGGTGGCTTCGGTCGGGTCGCCGACCGCGCCGAGTTTGCCCGCCAGCCAGGCCAGTTGGTCGTCGACGGGGGTGGTGGTGGGGTCTGGGGGCGGGCCCGCGTCCGGGCCCAGGGTGCGCGCGGCGTCGGCGACGAAGAAGCCCGCGAGTTCCCGTTCGGTTTGGGTG # Questionable array : NO Score: 5.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCGCAAGCGGGGCTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGCTGTTCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.60,-12.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 4593819-4593128 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBCK010000001.1 Actinokineospora baliensis strain DSM 45656 Ga0451094_01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 4593818 29 100.0 32 ............................. TACTACCAAGTCGCCGCGAACGCCGCGATCGG 4593757 29 100.0 33 ............................. GCGGTGAGACCACCTTTGCCGAAGCGTTCCCGC 4593695 29 100.0 32 ............................. ATGGCAACACATGCGTGAGCATCTGCACGTGT 4593634 29 100.0 32 ............................. TGGGTGCACGAGGTCGACCTCGACACCCTCGA 4593573 29 100.0 32 ............................. CGCGCCAGGTAGTGCTCGACCAGGCGCTCGGC 4593512 29 100.0 31 ............................. CTAGGACGCCGGTGGCGAGCGTCTCGATGTG 4593452 29 100.0 32 ............................. ACCTTGATCGTCTGGGCGCTCAAGGTCATCGA 4593391 29 89.7 32 ..A.................A.......G GTCGTCGTCATCCGCCACCCCGGACGCCGACT 4593330 28 93.1 32 A...........-................ GAGCCTGCGGCCGACTCGGTGGCCTTGCCCAC 4593270 27 86.2 26 ........-..A-......A......... ACGGCGCCCTGTCCTGCGGCGGCGTC 4593217 29 93.1 32 ..T..........A............... GGGACGTCGCTGGCGTCGTACCAGAGCCGGAC 4593156 29 96.6 0 ............................G | ========== ====== ====== ====== ============================= ================================= ================== 12 29 96.6 32 GTGCTCCCCGCGCGAGCGGGGCTGTTCCC # Left flank : CGCCCCAGCGATCTCCGCCGCCGCAGCAGCCACCGCAACCTCATCGGTGATGTCGGTGACCACGGCGTGAACGTCAGCACTCTCGCCCAGCCGATCCCGGGTCTCCCACAACTCAGCAGCGAGCACATCAACCAGCCCAACCGCCGCGCCCTGGGCCGCCGCCGTCTCGGCGATCGCCCGCCCAATCCCCCGCGCCGCGCCCGTTACCAGCACGACCTCGCCAGCCAGCCCGCCCCGCGCCACTGCCACCTCCGGTCGCTGTACCGGCGGTCAGACTACGCGAGGGTCACCCGCCGGAAGAGCGTGCGAACAGGGCACCGTTGACTCCGACCATGGCGGGCCCAATGCGGCCAACATCCAAGCCCGCGCCCCTACACTCCGACCATGCGGCACCCGACCCACCTCAGCCCGAACCACGACCGCCCCGGACAGCGGTCGATCGAGCTCCAAAAGTGAAGGAAAACCCACGCCTCGGCTGACAACGTGCCTGGTCAGCAAGT # Right flank : CTGCATGGCTAGCCAGCGTCCTCCCACATGAGTCTCGCTGGGAGATCACCTGCCCGATCGGGCGGTTGCCAGTGCGGCAGCTGCGAGTTCCTTGGACTGCGTGCAGGGGTCGTGAGTGGGGGAACCGTCGTTGTAGCGGATGCGGGCGTTGATGTAGTGCGTGTCGTCTAGTTCTACGGCGGTTTCGCACCAGCCGGGGCCTGGCTCGCGTTGGTAGGTGATGGCTGGGCTGCCATCGATCTCCGCGATTTGCCAGCGGTTCGGGGACAGGCGGCCTTGACCATGAGCAGCGCGGAGGTCGTCAAGCCCCTGGGGCGGCCCAAAACAGATCTGCACCATGGGAGCGGTGTCGAGCTTGGAGAACTCGCACGGATTGCCGGGCTGCCCTTGCAGTCGTTCGCCCGTGTCCAAGTGCGTTCCCGGGGCTTCGCAAACTCGCGTTCCAAGCGGGCGAAGCAAGTCAGCTCCGGGTGGGGTCGCCCAGCCACCAGTTTCCTGGC # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGAGCGGGGCTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCGTGCGGGGCTGTTCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.60,-12.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 4608364-4607786 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBCK010000001.1 Actinokineospora baliensis strain DSM 45656 Ga0451094_01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4608363 29 100.0 32 ............................. GGTTGCCACCCTGGCCGACCGGCATGAGACCA 4608302 29 100.0 32 ............................. CGGCATCGTGGCACTGGTTGGCGTCGAGTGTG 4608241 29 96.6 32 ............................T GCCTCGACGTCCTGCTCGGTCAGGGACTGCTG 4608180 29 100.0 32 ............................. TTGCCGGTCCGGCCGCCCCTGGAACTGGCGGA 4608119 29 100.0 32 ............................. CAGCCGCGGTTCGGCGTCGCGGCCAGCTCGTC 4608058 29 100.0 32 ............................. GGCAGGGGCTCGTTCGTGCCCCGGTAGCGGCG 4607997 29 100.0 32 ............................. GACTGCTCGATCCCCTCGGGTTCGCCGAGCGG 4607936 29 100.0 32 ............................. CCCTCGCGCAGCACGCGGTGCCCGTCCAGGTG 4607875 29 89.7 32 .............AG............T. GACATCCCGGGAACGTTCAACTTGAACCGGTT 4607814 29 82.8 0 ...........C.AT..C..........A | ========== ====== ====== ====== ============================= ================================ ================== 10 29 96.9 32 GTGCTCCCCGCGCGAGCGGGGCTGTTCCC # Left flank : ATCCTCGTGGAACACGCCGTCCATCCCCGGCCGGCAACCTGACTCCCGGGCTCACACCCGATCACAGTGGCGGGACCGCGCCGGATTCACACCGGCTTCCCCGTACCGAGGGCTTACCCGCACAGTTATAGCAGGCCACACGCCCTCGGGACCATTGGCCCCTCATCCCAGCGGCGGATACGGCAAACAACCTGCTGCCCGTACCCGTAGGCGCCTCAAGGTCAAACACGGTGCCGCCACATCCCCCGCCGCATGGTCTTCATGGGCGCATCAACGACAGGGCACGCCGCTGTTGGCGACCTCCGGCTTCAACACGCGGACGACTGAGTGTTCAACCCAACCAGCGCCGCCAACACCCTGCTTAGCGGCCCTACACTCTGCACCATGCGGCACCCGCCCCACATCAGCGCCAACCGCGACCGACCCGAGCAGGCGTCAATCACGTTCCAGAAGTGAATGAAAACCGAGGCCCCGGCCGACAACGTGCCTGGTCAGCAAGT # Right flank : GAGCACCCTCGCCACGTGGCTGTGGCGGTCGACGAACCCGGGGCCGATGGTGCTCACCGGCCCGTCGGTGGTCAGCCCGCTCGGCGCCGCGCCAGGCGGACCTGGACGGCGGTGGTGATGGGGGTGTGGCCGGACCAGTGCTCGGTCGAGCCGTCGGTGAGGCGGAGGGTCAGGGTGTGCAGGTGGCCTGCGTCCAGGGCGGTGAGGTGGGTGCAGACGTCTGGGAGGTGTGGGTCGTGGGTGGTGGCGTGGAGCATGCGGTGGATGGCGGTGCTCACGCAGTGGGTTGCCGCGGTTTCGTCGCCCGCGTGCCGGGACCGCTCGCGCTGCCACGAGGTGCCCAGGAGGAGCCGTGCGGTGTTCCACGCGTCGACGACCGCCGCGTTTGAGGTGATCTGGGGGGCGGCGAGCTCGGCGCGGTCGCGGTGGTGGGCGGACCAGACGACGACAACACCCGCGGTGAAGTCTCCGGCCAGTGCCGGGTCGGTGGCGACCGAGCC # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGAGCGGGGCTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCGTGCGGGGCTGTTCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.60,-12.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 5307775-5308780 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBCK010000001.1 Actinokineospora baliensis strain DSM 45656 Ga0451094_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5307775 29 100.0 32 ............................. AGGTCGAGCTGGTCGCCCGCGTCGCTGGCGAT 5307836 29 96.6 32 ............................T CCACTACGGACAACGTTTCAAGGCAGGATGAC 5307897 29 100.0 32 ............................. GGAATCAGGACTGGCGTGCGGGTGCAGGTGGA 5307958 29 100.0 32 ............................. TTGCCCGCCGCCGAGGCCAGCCACTCCTGGTG 5308019 29 100.0 32 ............................. GGGTGGCCACTGGCCACCACGGTGGTCCGCCG 5308080 29 96.6 32 ............................G TTTGCCAGCCTCTGCCAGTCCTTGCCCATGCG 5308141 29 100.0 32 ............................. GAGTGCCCCATCCTGCGCGCGCTAGCCGCTGT 5308202 29 96.6 32 ..........................A.. GCATTGCACAGACCCCATGCAAATGTCTGCCC 5308263 29 96.6 32 ...T......................... CCGCGCCCCTCCAGCACGATCGCCAGCGCGCT 5308324 29 96.6 32 ...T......................... GCCTCCGGAAGGAACGGGGCTTGGCGACACGC 5308385 29 89.7 32 .C.T.......A................. CCGGTCCACATCACCAGCCCGCCACCCTCGCG 5308446 29 96.6 32 ............................G GACGCGGAGTGGATCGCCGGTCTGCAGTTGAC 5308507 29 89.7 32 ............T....A..........G CGCTGGCGGTATGCGTTGGGCCTGACCCAGCG 5308568 29 100.0 32 ............................. GCCACCCTGCCGGGGACACGCCTGCGGGTGAC 5308629 29 86.2 32 .......A......C......A......G GCCGACTACGTCAGCGTGACCGTCCGGTCCGT 5308690 29 96.6 32 ........................C.... TGCGGCGGCAGCCCGGTGTAGGACGCGACGTG 5308751 29 89.7 0 A..G....................C.... | T [5308764] ========== ====== ====== ====== ============================= ================================ ================== 17 29 96.0 32 GTCCTCCCCGCGCAAGCGGGGCTGTTCCC # Left flank : CTCGCCGTAACCCCCCGCAGAACTTCGGCCAACTCCTCCGGCCGCCGCCCCACCCCCAACGGCCGAGTCAACACCGGCGACAACGGATTGATCGACAGCCCCGAAGGCCCCCCAACCCCGCACAGGAACGGCGCATCAGCCTCAGCAGAAACCACCTCGACCGGCTCAGCCCCCTGCCCCCACCGCACCACCCGGTTCAACCGAACCAGACCGAGTAAGGGAGAACGTCGCCGCAGGTCCCCGTACAGCACGGTCGAACCACCCCCGCCAGTGCACGATCGAGTGACATCCGACCGCCGACTGTAGTCCGCCCGTGCAGATTCACGTGCAAGCCATCTGAGTGATCATCCCCCACACGAGCGGTAACCACCCTCGTGGTCACCCTCCGCCCCTAAACTCCCCCCGTGCCACCCAGCACGACCCACCTCAGGCACCGGCCACCCACTCCATAAGTGAACGAAAACCGCCGCCCAGACCCACAAACCCCCAGTTCACGAAGT # Right flank : CTGCCCTCTAGCCGTCAATCGATCCGCAAGGAGTCCCGGGAGTAGGCGCGAAGTGCCGCCACGATGTCGTCGCGGGTTCGGGTGAAGAGGCGGGTGTCCAGCGGGAGGCCGGGGCCGGAGGCTATGGGCCAGGCGTCTCGGCGGTGGAGGCCGGTGACGCCGGGGGTGGTGGGGGTGACGCTGAGGCGGAGGCGGAAGCGGAGGGTTGGGCCGTCCACGCCCACCGAGCGGAGCGTGTCCCAGGGCAGGAAAGCCGGACCTTGGCCGGTGGGCAGCCGCACGCCGGTGAGGTCGATCATCAGGGGGCTGGAGCGGCGCTTGTGCCGAGCCGCGTACCCGCCGAGTTTCACCGCGGCCACCGCCACGCCCACAGCCAAGACCACCAGCCCGATCCAACCGACCAGCAGCAACCCAACTCCCGCGACCACCAGCACGCCAGCACCGACCAGCCACGGCACGAGCGGGCGGCGCCAGGCGTCCTGGTCGACCTCCGCGATGAA # Questionable array : NO Score: 5.59 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.53, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCGCAAGCGGGGCTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGCTGTTCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.90,-12.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //